diff options
| -rw-r--r-- | gnu/packages/bioinformatics.scm | 36 |
1 files changed, 36 insertions, 0 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index 35c28b804e..8ca3d120c4 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -569,6 +569,42 @@ BED, GFF/GTF, VCF.") `(("samtools" ,samtools) ("zlib" ,zlib))))) +(define-public pbcopper + ;; This is the latest commit at the time of this writing. + (let ((commit "ad4143afd25a0bd6adc977c544865c992a515841") + (revision "1")) + (package + (name "pbcopper") + (version (git-version "1.9.0" revision commit)) + (source (origin + (method git-fetch) + (uri (git-reference + (url "https://github.com/PacificBiosciences/pbcopper") + (commit commit))) + (file-name (git-file-name name version)) + (sha256 + (base32 + "1qxkbpdkamfisnk36lpi1vdvf3p1lg2hdqna3xgd94pz52bwbmp7")))) + (build-system meson-build-system) + (arguments + `(#:phases + (modify-phases %standard-phases + (add-after 'unpack 'patch-meson-files + (lambda* (#:key inputs #:allow-other-keys) + (substitute* "meson.build" + (("-msse4.1") ""))))))) + (inputs + `(("boost" ,boost))) + (native-inputs + `(("googletest" ,googletest) + ("pkg-config" ,pkg-config))) + (home-page "https://github.com/PacificBiosciences/pbcopper") + (synopsis "Data structures, algorithms, and utilities for PacBio C++ applications") + (description + "The pbcopper library provides a suite of data structures, algorithms, +and utilities for PacBio C++ applications.") + (license license:bsd-3)))) + (define-public pbbam (package (name "pbbam") |