diff options
| -rw-r--r-- | gnu/packages/cran.scm | 73 |
1 files changed, 39 insertions, 34 deletions
diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index 39caf56a13..fe29b9f581 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -42,6 +42,7 @@ #:use-module (guix utils) #:use-module (guix build-system r) #:use-module (gnu packages algebra) + #:use-module (gnu packages autotools) #:use-module (gnu packages base) #:use-module (gnu packages bioinformatics) #:use-module (gnu packages c) @@ -15690,43 +15691,47 @@ dataset-specific factors.") (license license:gpl3))) (define-public r-harmony - ;; There are no tagged commits - (let ((commit "4d1653870d4dd70fff1807c182882db1fbf9af5a") - (revision "1")) - (package - (name "r-harmony") - (version (git-version "1.0" revision commit)) - (source - (origin - (method git-fetch) - (uri (git-reference - (url "https://github.com/immunogenomics/harmony") - (commit commit))) - (file-name (git-file-name name version)) - (sha256 - (base32 - "1gasdldr4aalr9h2q9kmm3y4i7azkgnhdn4bmvsszs7lg9xacw85")))) - (build-system r-build-system) - (propagated-inputs - `(("r-cowplot" ,r-cowplot) - ("r-dplyr" ,r-dplyr) - ("r-ggplot2" ,r-ggplot2) - ("r-irlba" ,r-irlba) - ("r-matrix" ,r-matrix) - ("r-rcpp" ,r-rcpp) - ("r-rcpparmadillo" ,r-rcpparmadillo) - ("r-rcppprogress" ,r-rcppprogress) - ("r-rlang" ,r-rlang) - ("r-tibble" ,r-tibble) - ("r-tidyr" ,r-tidyr))) - (home-page "https://github.com/immunogenomics/harmony") - (synopsis "Integration of single cell sequencing data") - (description - "This package provides an implementation of the Harmony algorithm for + (package + (name "r-harmony") + (version "0.1") + (source + (origin + (method git-fetch) + (uri (git-reference + (url "https://github.com/immunogenomics/harmony") + (commit version))) + (file-name (git-file-name name version)) + (sha256 + (base32 + "05r401q09rbr6fqhb9mbd95082cjdi3nag1cv6zn96xkr0f6imq9")) + (modules '((guix build utils))) + (snippet + '(begin + (for-each delete-file '("config.status" "configure")) + #t)))) + (build-system r-build-system) + (propagated-inputs + `(("r-cowplot" ,r-cowplot) + ("r-dplyr" ,r-dplyr) + ("r-ggplot2" ,r-ggplot2) + ("r-irlba" ,r-irlba) + ("r-matrix" ,r-matrix) + ("r-rcpp" ,r-rcpp) + ("r-rcpparmadillo" ,r-rcpparmadillo) + ("r-rcppprogress" ,r-rcppprogress) + ("r-rlang" ,r-rlang) + ("r-tibble" ,r-tibble) + ("r-tidyr" ,r-tidyr))) + (native-inputs + `(("autoconf" ,autoconf))) + (home-page "https://github.com/immunogenomics/harmony") + (synopsis "Integration of single cell sequencing data") + (description + "This package provides an implementation of the Harmony algorithm for single cell integration, described in Korsunsky et al @url{doi.org/10.1101/461954}. The package includes a standalone Harmony function and interfaces to external frameworks.") - (license license:gpl3)))) + (license license:gpl3))) (define-public r-covr (package |