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| -rw-r--r-- | gnu/packages/bioconductor.scm | 38 |
1 files changed, 38 insertions, 0 deletions
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index 72a0fe377f..1ea5e47321 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -10867,6 +10867,44 @@ identifier translation via the GDC API.") "This package implements widgets to provide user interfaces.") (license license:artistic2.0))) +(define-public r-toast + (package + (name "r-toast") + (version "1.16.0") + (source + (origin + (method url-fetch) + (uri (bioconductor-uri "TOAST" version)) + (sha256 + (base32 "00wpgs2zdrgrh9xmp6m5h9xgv85mhdi36qvwg9gwbz9i7cfabmy1")))) + (properties `((upstream-name . "TOAST"))) + (build-system r-build-system) + (propagated-inputs (list r-corpcor + r-doparallel + r-epidish + r-ggally + r-ggplot2 + r-limma + r-nnls + r-quadprog + r-summarizedexperiment + r-tidyr)) + (native-inputs (list r-knitr)) + (home-page "https://bioconductor.org/packages/TOAST") + (synopsis "Tools for the analysis of heterogeneous tissues") + (description + "This package is devoted to analyzing high-throughput data (e.g. gene +expression microarray, DNA methylation microarray, RNA-seq) from complex +tissues. Current functionalities include + +@enumerate +@item detect cell-type specific or cross-cell type differential signals +@item tree-based differential analysis +@item improve variable selection in reference-free deconvolution +@item partial reference-free deconvolution with prior knowledge. +@end enumerate") + (license license:gpl2))) + ;; TODO: check javascript (define-public r-trackviewer (package |