diff options
| -rw-r--r-- | gnu/local.mk | 4 | ||||
| -rw-r--r-- | gnu/packages/patches/lcalc-default-parameters-1.patch | 26 | ||||
| -rw-r--r-- | gnu/packages/patches/lcalc-default-parameters-2.patch | 58 | ||||
| -rw-r--r-- | gnu/packages/patches/lcalc-lcommon-h.patch | 13 | ||||
| -rw-r--r-- | gnu/packages/patches/lcalc-using-namespace-std.patch | 43 | ||||
| -rw-r--r-- | gnu/packages/sagemath.scm | 65 |
6 files changed, 209 insertions, 0 deletions
diff --git a/gnu/local.mk b/gnu/local.mk index 17acef9b15..4c54f024e0 100644 --- a/gnu/local.mk +++ b/gnu/local.mk @@ -973,6 +973,10 @@ dist_patch_DATA = \ %D%/packages/patches/kodi-set-libcurl-ssl-parameters.patch \ %D%/packages/patches/kodi-skip-test-449.patch \ %D%/packages/patches/laby-make-install.patch \ + %D%/packages/patches/lcalc-default-parameters-1.patch \ + %D%/packages/patches/lcalc-default-parameters-2.patch \ + %D%/packages/patches/lcalc-lcommon-h.patch \ + %D%/packages/patches/lcalc-using-namespace-std.patch \ %D%/packages/patches/lcms-CVE-2018-16435.patch \ %D%/packages/patches/ldc-bootstrap-disable-tests.patch \ %D%/packages/patches/ldc-disable-phobos-tests.patch \ diff --git a/gnu/packages/patches/lcalc-default-parameters-1.patch b/gnu/packages/patches/lcalc-default-parameters-1.patch new file mode 100644 index 0000000000..19b0776320 --- /dev/null +++ b/gnu/packages/patches/lcalc-default-parameters-1.patch @@ -0,0 +1,26 @@ +Patch taken from the Sage packaging system. + +diff -Naur lcalc-1.23-vanilla/include/Ldirichlet_series.h lcalc-1.23-fixed-gcc.4.9/include/Ldirichlet_series.h +--- lcalc-1.23-vanilla/include/Ldirichlet_series.h 2012-08-08 23:21:55.000000000 +0200 ++++ lcalc-1.23-fixed-gcc.4.9/include/Ldirichlet_series.h 2014-04-21 14:37:59.027464849 +0200 +@@ -43,7 +43,7 @@ + //XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX + template <class ttype> + Complex L_function <ttype>:: +-dirichlet_series(Complex s, long long N=-1) ++dirichlet_series(Complex s, long long N) + { + Complex z=0.; + long long m,n; +diff -Naur lcalc-1.23-vanilla/include/L.h lcalc-1.23-fixed-gcc.4.9/include/L.h +--- lcalc-1.23-vanilla/include/L.h 2012-08-08 23:21:55.000000000 +0200 ++++ lcalc-1.23-fixed-gcc.4.9/include/L.h 2014-04-21 14:32:04.003467348 +0200 +@@ -491,7 +491,7 @@ + + //#include "Ldirichlet_series.h" //for computing Dirichlet series + Complex partial_dirichlet_series(Complex s, long long N1, long long N2); +- Complex dirichlet_series(Complex s, long long N); ++ Complex dirichlet_series(Complex s, long long N=-1LL); + + //#include "Ltaylor_series.h" //for computing taylor series for Dirichlet series + //void compute_taylor_series(int N, int K, Complex s_0, Complex *series); diff --git a/gnu/packages/patches/lcalc-default-parameters-2.patch b/gnu/packages/patches/lcalc-default-parameters-2.patch new file mode 100644 index 0000000000..1d881ee0c4 --- /dev/null +++ b/gnu/packages/patches/lcalc-default-parameters-2.patch @@ -0,0 +1,58 @@ +Patch taken from the Sage packaging system. + +--- lcalc-1.23/include/Lgamma.h 2012-08-08 23:21:55.000000000 +0200 ++++ lcalc-1.23/include/Lgamma.h 2014-05-18 21:15:27.786889718 +0200 +@@ -77,7 +77,7 @@ + //n=0 should just give log_GAMMA(z)... thus making log_GAMMA + //code obsolete. But leave log_GAMMA intact anyways. + template <class ttype> +-precise(ttype) log_GAMMA (ttype z,int n=0) ++precise(ttype) log_GAMMA (ttype z,int n) + { + int M; + precise(ttype) log_G,r,r2,y; +@@ -230,7 +230,7 @@ + //value exp_w which holds exp(-w) + //computes G(z,w), so there's an extra w^(-z) factor. + template <class ttype> +-Complex inc_GAMMA (ttype z,ttype w, const char *method="temme", ttype exp_w = 0, bool recycle=false) ++Complex inc_GAMMA (ttype z,ttype w, const char *method, ttype exp_w, bool recycle) + { + + Complex G; +@@ -334,7 +334,7 @@ + + + template <class ttype> +-ttype cfrac_GAMMA (ttype z,ttype w, ttype exp_w=0, bool recycle=false) //computes G(z,w) via continued fraction ++ttype cfrac_GAMMA (ttype z,ttype w, ttype exp_w, bool recycle) //computes G(z,w) via continued fraction + { + + ttype G; +@@ -424,7 +424,7 @@ + } + + template <class ttype> +-ttype asympt_GAMMA (ttype z,ttype w, ttype exp_w = 0, bool recycle=false) //computes G(z,w) via asymptotic series ++ttype asympt_GAMMA (ttype z,ttype w, ttype exp_w, bool recycle) //computes G(z,w) via asymptotic series + { + + if(my_verbose>3) cout << "called asympt_GAMMA("<<z<<","<<w<<")"<< endl; +@@ -446,7 +446,7 @@ + + + template <class ttype> +-ttype comp_inc_GAMMA (ttype z,ttype w,ttype exp_w = 0, bool recycle=false) //computes g(z,w) ++ttype comp_inc_GAMMA (ttype z,ttype w,ttype exp_w, bool recycle) //computes g(z,w) + { + + ttype g; +@@ -604,7 +604,7 @@ + } + + template <class ttype> +-Complex gamma_sum(Complex s, int what_type, ttype *coeff, int N, Double g, Complex l, Double Q, Long Period, Complex delta=1, const char *method="temme") ++Complex gamma_sum(Complex s, int what_type, ttype *coeff, int N, Double g, Complex l, Double Q, Long Period, Complex delta, const char *method) + { + Complex SUM=0; + diff --git a/gnu/packages/patches/lcalc-lcommon-h.patch b/gnu/packages/patches/lcalc-lcommon-h.patch new file mode 100644 index 0000000000..897956de64 --- /dev/null +++ b/gnu/packages/patches/lcalc-lcommon-h.patch @@ -0,0 +1,13 @@ +Patch taken from the Sage packaging system. + +--- src/include/Lcommon.h 2010-01-31 15:16:45.000000000 +0000 ++++ src/include/Lcommon.h 2011-03-08 21:19:11.849443238 +0000 +@@ -25,7 +25,7 @@ + #ifdef USE_MPFR + inline double lcalc_to_double(const double& x) { return x; } + #endif +-//inline double lcalc_to_double(const long double& x) { return x; } ++inline double lcalc_to_double(const long double& x) { return x; } + inline double lcalc_to_double(const int& x) { return x; } + inline double lcalc_to_double(const long long& x) { return x; } + inline double lcalc_to_double(const short& x) { return x; } diff --git a/gnu/packages/patches/lcalc-using-namespace-std.patch b/gnu/packages/patches/lcalc-using-namespace-std.patch new file mode 100644 index 0000000000..6e0075fdc8 --- /dev/null +++ b/gnu/packages/patches/lcalc-using-namespace-std.patch @@ -0,0 +1,43 @@ +Patch taken from the Sage packaging system. + +diff --git a/include/Lcommon.h b/include/Lcommon.h +index 1b3be43..bf40532 100644 +--- a/include/Lcommon.h ++++ b/include/Lcommon.h +@@ -48,7 +48,7 @@ const bool outputSeries=true; // Whether to output the coefficients or just th + + // Loop i from m to n + // Useful in tidying up most for loops +-#define loop(i,m,n) for(typeof(m) i=(m); i!=(n); i++) ++#define loop(i,m,n) for(auto i=(m); i!=(n); i++) + + // A class for calculations involving polynomials of small degree + // Not efficient enough for huge polynomials +diff --git a/include/Lcommon_ld.h b/include/Lcommon_ld.h +index 86ae4df..33c560c 100644 +--- a/include/Lcommon_ld.h ++++ b/include/Lcommon_ld.h +@@ -53,7 +53,7 @@ const bool outputSeries=true; // Whether to output the coefficients or just th + + // Loop i from m to n + // Useful in tidying up most for loops +-#define loop(i,m,n) for(typeof(m) i=(m); i!=(n); i++) ++#define loop(i,m,n) for(auto i=(m); i!=(n); i++) + + // A class for calculations involving polynomials of small degree + // Not efficient enough for huge polynomials +diff --git a/include/Lglobals.h b/include/Lglobals.h +index 60002e4..ca2606c 100644 +--- a/include/Lglobals.h ++++ b/include/Lglobals.h +@@ -24,9 +24,9 @@ + #ifndef Lglobals_H + #define Lglobals_H + ++#include <valarray> + using namespace std; + +-#include <valarray> + #ifdef USE_MPFR + #include "Lgmpfrxx.h" + typedef mpfr_class Double; diff --git a/gnu/packages/sagemath.scm b/gnu/packages/sagemath.scm index 63d1281668..7517b55175 100644 --- a/gnu/packages/sagemath.scm +++ b/gnu/packages/sagemath.scm @@ -24,6 +24,7 @@ #:use-module (guix git-download) #:use-module (guix packages) #:use-module (guix utils) + #:use-module (gnu packages) #:use-module (gnu packages algebra) #:use-module (gnu packages autotools) #:use-module (gnu packages bdw-gc) @@ -353,3 +354,67 @@ Boolean variables. As a unique approach, binary decision diagrams are used as internal storage type for polynomial structures.") (license license:gpl2+) (home-page "https://gitlab.com/sagemath/zn_poly"))) + +(define-public lcalc + (package + (name "lcalc") + (version "1.23") + ;; The original home page of the project has disappeared, as well as + ;; code hosted by the original author on Google Code. The latter has + ;; been copied to gitlab.com/sagemath and purportedly contains patches + ;; for a never released version 1.3, that supposedly follows 1.23. + ;; We use the tarball as well as the patches hosted inside the sage + ;; package system distributed with the sage tarball. + (source + (origin + (method url-fetch) + (uri (string-append "ftp://ftp.fu-berlin.de/unix/misc/sage/spkg/" + "upstream/lcalc/lcalc-1.23.tar.bz2")) + (sha256 + (base32 + "1c6dsdshgxhqppjxvxhp8yhpxaqvnz3d1mlh26r571gkq8z2bm43")) + (patches (search-patches "lcalc-lcommon-h.patch" + "lcalc-default-parameters-1.patch" + "lcalc-default-parameters-2.patch" + "lcalc-using-namespace-std.patch")))) + (build-system gnu-build-system) + (arguments + `(#:tests? #f ;no tests + #:phases + (modify-phases %standard-phases + (delete 'configure) + (add-before 'build 'prepare-build + (lambda* (#:key outputs #:allow-other-keys) + (chdir "src") + (let ((out (assoc-ref outputs "out"))) + (substitute* "Makefile" + (("^INSTALL_DIR= /usr/local") + (string-append "INSTALL_DIR=" out)) + ;; Sage renames the include directory, so we do it also. + (("include/Lfunction") + "include/libLfunction") + ;; Add --std=c++11 to be compatible with the "auto" keyword + ;; introduced by lcalc-using-namespace-std.patch. + (("^#EXTRA= -pg") + "EXTRA=--std=c++11"))) + #t)) + (add-before 'install 'make-output-dirs + (lambda* (#:key outputs #:allow-other-keys) + (let* ((out (assoc-ref outputs "out")) + (bin (string-append out "/bin")) + (lib (string-append out "/lib")) + (include (string-append out "/include"))) + (mkdir-p bin) + (mkdir-p lib) + (mkdir-p include)) + #t))))) + ;; FIXME: + ;; We need to add pari-gp and probably pari related patches from the + ;; sage project, as well as uncomment the line setting PARI_DEFINE in + ;; the Makefile to get the full functionality of this package. + ;; For the time being, we hope that sage can be compiled without. + (synopsis "C++ library for L-functions") + (description "Lcalc computes L-functions, in particular the Riemann +zeta function and its twists by quadratic characters.") + (license license:gpl2+) + (home-page "https://gitlab.com/sagemath/sage"))) |