diff options
Diffstat (limited to 'gnu/packages/astronomy.scm')
| -rw-r--r-- | gnu/packages/astronomy.scm | 258 |
1 files changed, 222 insertions, 36 deletions
diff --git a/gnu/packages/astronomy.scm b/gnu/packages/astronomy.scm index e968fd2480..c209b1538f 100644 --- a/gnu/packages/astronomy.scm +++ b/gnu/packages/astronomy.scm @@ -1,11 +1,11 @@ ;;; GNU Guix --- Functional package management for GNU ;;; Copyright © 2016 John Darrington <jmd@gnu.org> ;;; Copyright © 2018–2021 Tobias Geerinckx-Rice <me@tobias.gr> -;;; Copyright © 2018, 2019, 2020, 2021 Efraim Flashner <efraim@flashner.co.il> +;;; Copyright © 2018, 2019, 2020, 2021, 2022 Efraim Flashner <efraim@flashner.co.il> ;;; Copyright © 2019 by Amar Singh <nly@disroot.org> ;;; Copyright © 2020 R Veera Kumar <vkor@vkten.in> ;;; Copyright © 2020, 2021 Guillaume Le Vaillant <glv@posteo.net> -;;; Copyright © 2021 Sharlatan Hellseher <sharlatanus@gmail.com> +;;; Copyright © 2021, 2022 Sharlatan Hellseher <sharlatanus@gmail.com> ;;; Copyright © 2021, 2022 Vinicius Monego <monego@posteo.net> ;;; Copyright © 2021 Greg Hogan <code@greghogan.com> ;;; Copyright © 2021 Foo Chuan Wei <chuanwei.foo@hotmail.com> @@ -297,7 +297,7 @@ astronomical image-processing packages like Drizzle, Swarp or SExtractor.") (define-public gnuastro (package (name "gnuastro") - (version "0.16") + (version "0.17") (source (origin (method url-fetch) @@ -305,19 +305,19 @@ astronomical image-processing packages like Drizzle, Swarp or SExtractor.") version ".tar.lz")) (sha256 (base32 - "07xr0r5dmjpnrz7ylf7k3vmjjna2jafi16lfvkqwxj9fyssmz207")))) + "1gq37axs9l556pxxmnh47h088gbmp7sk3xjg59qzk2bsycg3dkgh")))) (build-system gnu-build-system) (arguments '(#:configure-flags '("--disable-static"))) (inputs - `(("cfitsio" ,cfitsio) - ("curl" ,curl-minimal) - ("gsl" ,gsl) - ("libgit2" ,libgit2) - ("libjpeg" ,libjpeg-turbo) - ("libtiff" ,libtiff) - ("wcslib" ,wcslib) - ("zlib" ,zlib))) + (list cfitsio + curl-minimal + gsl + libgit2 + libjpeg-turbo + libtiff + wcslib + zlib)) (native-inputs (list libtool lzip)) (home-page "https://www.gnu.org/software/gnuastro/") @@ -614,13 +614,13 @@ accurately in real time at any rate desired.") (define-public python-astropy (package (name "python-astropy") - (version "5.0") + (version "5.0.1") (source (origin (method url-fetch) (uri (pypi-uri "astropy" version)) (sha256 - (base32 "09rr9z2kn5qw34fqpwxgcwsn9m5aw6f0dd0pm232aa8k3qakw83h")) + (base32 "09wh589ywjsgjvi76v2d2zqd9sri0461rrnml0b0pah5lbkcv0k3")) (modules '((guix build utils))) (snippet '(begin @@ -826,21 +826,20 @@ of astronomical sources.") (define-public python-pyvo (package (name "python-pyvo") - (version "1.2") + (version "1.2.1") (source (origin (method url-fetch) (uri (pypi-uri "pyvo" version)) (sha256 - (base32 "1lap703wxbyxqlbk85myirp4pkdnc6cg10xhfajfsvz5k0hm5ffw")))) + (base32 "1ri5yp6903386lkn79mdcmlax7zsfrrrjbcvb91wxydcc9yasc1n")))) (build-system python-build-system) (arguments - `(#:phases + '(#:phases (modify-phases %standard-phases (replace 'check - (lambda* (#:key inputs outputs tests? #:allow-other-keys) + (lambda* (#:key tests? #:allow-other-keys) (when tests? - (add-installed-pythonpath inputs outputs) (invoke "python" "-m" "pytest" "--pyargs" "pyvo" "-k" (string-append ; these tests use the network "not test_access_with_string" @@ -1460,34 +1459,221 @@ of stand-alone functions and classes.") (define-public python-asdf (package (name "python-asdf") - (version "2.7.4") + (version "2.8.3") (source (origin (method url-fetch) (uri (pypi-uri "asdf" version)) (sha256 - (base32 "1mj52l2m8pbhiqacgjakjpvqi8kyx470yw151lcsswbq5wp0rsc6")))) + (base32 "0i4vq1hsympjgb1yvn4ql0gm8j1mki9ggmj03533kmg0nbzp03yy")))) (build-system python-build-system) (arguments - ;; TODO: (Sharlatan-20210207T165820+0000): Tests depend on astropy, astropy - ;; depends on asdf. Disable circular dependence. + ;; NOTE: (Sharlatan-20211229T201059+0000): Tests depend on astropy and + ;; gwcs, astropy gwcs depend on asdf. Disable circular dependence. `(#:tests? #f)) (native-inputs - `(("packaging" ,python-packaging) - ("semantic-version" ,python-semantic-version) - ("setuptools-scm" ,python-setuptools-scm))) - (inputs - `(("importlib-resources" ,python-importlib-resources) - ("jsonschema" ,python-jsonschema) - ("numpy" ,python-numpy) - ("pyyaml" ,python-pyyaml))) - (home-page "https://github.com/asdf-format/asdf") - (synopsis "Python tools to handle ASDF files") - (description - "The Advanced Scientific Data Format (ASDF) is a next-generation + (list python-setuptools-scm + python-semantic-version + python-packaging)) + (propagated-inputs + (list python-importlib-resources + python-jsonschema + python-jmespath + python-numpy + python-pyyaml)) + (home-page "https://github.com/asdf-format/asdf") + (synopsis "Python tools to handle ASDF files") + (description + "The Advanced Scientific Data Format (ASDF) is a next-generation interchange format for scientific data. This package contains the Python implementation of the ASDF Standard.") - (license license:bsd-3))) + (license license:bsd-3))) + +(define python-asdf-transform-schemas + (package + (name "python-asdf-transform-schemas") + (version "0.2.0") + (source + (origin + (method url-fetch) + (uri (pypi-uri "asdf_transform_schemas" version)) + (sha256 + (base32 "1gmzd81hw4ppsvzrc91wcbjpcw9hhv9gavllv7nyi7qjb54c837g")))) + (build-system python-build-system) + (arguments + `(#:phases + (modify-phases %standard-phases + (replace 'check + (lambda* (#:key inputs outputs tests? #:allow-other-keys) + (when tests? + (add-installed-pythonpath inputs outputs) + (invoke "python" "-m" "pytest"))))))) + (native-inputs + (list python-pytest + python-semantic-version + python-setuptools-scm)) + (propagated-inputs + (list python-asdf)) + (home-page "https://github.com/asdf-format/asdf-transform-schemas") + (synopsis "ASDF schemas for transforms") + (description + "This package provides ASDF schemas for validating transform tags. Users +should not need to install this directly; instead, install an implementation +package such as asdf-astropy.") + (license license:bsd-3))) + +(define python-asdf-coordinates-schemas + (package + (name "python-asdf-coordinates-schemas") + (version "0.1.0") + (source + (origin + (method url-fetch) + (uri (pypi-uri "asdf_coordinates_schemas" version)) + (sha256 + (base32 "0ahwhsz5jzljnpkfd2kvspirg823lnj5ip9sfkd9cx09z1nlz8jg")))) + (build-system python-build-system) + (arguments + `(#:phases + (modify-phases %standard-phases + (replace 'check + (lambda* (#:key inputs outputs tests? #:allow-other-keys) + (when tests? + (add-installed-pythonpath inputs outputs) + (invoke "python" "-m" "pytest"))))))) + (native-inputs + (list python-pytest + python-semantic-version + python-setuptools-scm)) + (propagated-inputs + (list python-asdf)) + (home-page "https://github.com/asdf-format/asdf-coordinates-schemas") + (synopsis "ASDF coordinates schemas") + (description "This package provides ASDF schemas for validating +coordinates tags. Users should not need to install this directly; instead, +install an implementation package such as asdf-astropy.") + (license license:bsd-3))) + +(define-public python-asdf-astropy + (package + (name "python-asdf-astropy") + (version "0.1.2") + (source + (origin + (method url-fetch) + (uri (pypi-uri "asdf_astropy" version)) + (sha256 + (base32 "0bzgah7gskvnz6jcrzipvzixv8k2jzjkskqwxngzwp4nxgjbcvi4")))) + (build-system python-build-system) + (arguments + `(#:phases + (modify-phases %standard-phases + (replace 'check + (lambda* (#:key inputs outputs tests? #:allow-other-keys) + (when tests? + (add-installed-pythonpath inputs outputs) + (invoke "python" "-m" "pytest"))))))) + (native-inputs + (list python-coverage + python-h5py + python-matplotlib + python-pandas + python-pytest-astropy + python-scipy + python-semantic-version + python-setuptools-scm)) + (propagated-inputs + (list python-asdf + python-asdf-coordinates-schemas + python-asdf-transform-schemas + python-astropy + python-numpy + python-packaging)) + (home-page "https://github.com/astropy/asdf-astropy") + (synopsis "ASDF serialization support for astropy") + (description + "This package includes plugins that provide ASDF serialization support for +Astropy objects.") + (license license:bsd-3))) + +(define python-asdf-wcs-schemas + (package + (name "python-asdf-wcs-schemas") + (version "0.1.1") + (source + (origin + (method url-fetch) + (uri (pypi-uri "asdf_wcs_schemas" version)) + (sha256 + (base32 "0khyab9mnf2lv755as8kwhk3lqqpd3f4291ny3b9yp3ik86fzhz1")))) + (build-system python-build-system) + (arguments + `(#:phases + (modify-phases %standard-phases + (replace 'check + (lambda* (#:key inputs outputs tests? #:allow-other-keys) + (when tests? + (add-installed-pythonpath inputs outputs) + (invoke "python" "-m" "pytest"))))))) + (native-inputs + (list python-pytest + python-setuptools-scm + python-semantic-version)) + (propagated-inputs + (list python-asdf)) + (home-page "https://github.com/asdf-format/asdf-wcs-schemas") + (synopsis "ASDF WCS Schemas") + (description + "This package provides ASDF schemas for validating World Coordinate +System (WCS) tags. Users should not need to install this directly; instead, +install an implementation package such as gwcs.") + (license license:bsd-3))) + +(define-public python-gwcs + (package + (name "python-gwcs") + (version "0.18.0") + (source + (origin + (method url-fetch) + (uri (pypi-uri "gwcs" version)) + (sha256 + (base32 "194j49m8xjjzv9pp8cnj06igz8sdxb0nphyybcc7mhigw0f0kr30")))) + (build-system python-build-system) + (arguments + `(#:phases + (modify-phases %standard-phases + (replace 'check + (lambda* (#:key inputs outputs tests? #:allow-other-keys) + (when tests? + (add-installed-pythonpath inputs outputs) + (invoke "python" "-m" "pytest"))))))) + (native-inputs + (list python-jsonschema + python-jmespath + python-pytest + python-pytest-doctestplus + python-pyyaml + python-semantic-version + python-setuptools-scm)) + (propagated-inputs + (list python-asdf + python-asdf-astropy + python-asdf-wcs-schemas + python-astropy + python-numpy + python-scipy)) + (home-page "https://gwcs.readthedocs.io/en/latest/") + (synopsis "Generalized World Coordinate System") + (description "Generalized World Coordinate System (GWCS) is an Astropy +affiliated package providing tools for managing the World Coordinate System of +astronomical data. + +GWCS takes a general approach to the problem of expressing transformations +between pixel and world coordinates. It supports a data model which includes +the entire transformation pipeline from input coordinates (detector by +default) to world coordinates.") + (license license:bsd-3))) (define-public python-astroalign (package |