diff options
Diffstat (limited to 'gnu/packages/bioconductor.scm')
| -rw-r--r-- | gnu/packages/bioconductor.scm | 34 |
1 files changed, 34 insertions, 0 deletions
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index 0e26033d44..adc0e846d2 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -1898,3 +1898,37 @@ any continuous-valued or categorical variable that is thought to be informative on the statistical properties of each hypothesis test, while it is independent of the p-value under the null hypothesis.") (license license:artistic2.0))) + +(define-public r-icobra + (package + (name "r-icobra") + (version "1.10.0") + (source + (origin + (method url-fetch) + (uri (bioconductor-uri "iCOBRA" version)) + (sha256 + (base32 + "0i1swrm31g0zffi5pm48bfvdfqpd32d0zdchkbyipz96al46jnld")))) + (properties `((upstream-name . "iCOBRA"))) + (build-system r-build-system) + (propagated-inputs + `(("r-dplyr" ,r-dplyr) + ("r-dt" ,r-dt) + ("r-ggplot2" ,r-ggplot2) + ("r-limma" ,r-limma) + ("r-reshape2" ,r-reshape2) + ("r-rocr" ,r-rocr) + ("r-scales" ,r-scales) + ("r-shiny" ,r-shiny) + ("r-shinybs" ,r-shinybs) + ("r-shinydashboard" ,r-shinydashboard) + ("r-upsetr" ,r-upsetr))) + (home-page "https://bioconductor.org/packages/iCOBRA") + (synopsis "Comparison and visualization of ranking and assignment methods") + (description + "This package provides functions for calculation and visualization of +performance metrics for evaluation of ranking and binary +classification (assignment) methods. It also contains a Shiny application for +interactive exploration of results.") + (license license:gpl2+))) |