diff options
Diffstat (limited to 'gnu/packages/bioconductor.scm')
| -rw-r--r-- | gnu/packages/bioconductor.scm | 38 |
1 files changed, 38 insertions, 0 deletions
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index 2b22c510ea..0bcd9a67cd 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -10643,6 +10643,44 @@ large-scale and fully automated analysis.") the earlier snpMatrix package, allowing for uncertainty in genotypes.") (license license:gpl3))) +(define-public r-chromstar + (package + (name "r-chromstar") + (version "1.16.0") + (source + (origin + (method url-fetch) + (uri (bioconductor-uri "chromstaR" version)) + (sha256 + (base32 + "0vgpb7g2cncdn82hia2yzzachyns2zbd7906662g990qjnp2xlm1")))) + (properties `((upstream-name . "chromstaR"))) + (build-system r-build-system) + (propagated-inputs + `(("r-bamsignals" ,r-bamsignals) + ("r-biocgenerics" ,r-biocgenerics) + ("r-chromstardata" ,r-chromstardata) + ("r-doparallel" ,r-doparallel) + ("r-foreach" ,r-foreach) + ("r-genomeinfodb" ,r-genomeinfodb) + ("r-genomicalignments" ,r-genomicalignments) + ("r-genomicranges" ,r-genomicranges) + ("r-ggplot2" ,r-ggplot2) + ("r-iranges" ,r-iranges) + ("r-mvtnorm" ,r-mvtnorm) + ("r-reshape2" ,r-reshape2) + ("r-rsamtools" ,r-rsamtools) + ("r-s4vectors" ,r-s4vectors))) + (native-inputs `(("r-knitr" ,r-knitr))) + (home-page "https://github.com/ataudt/chromstaR") + (synopsis "Chromatin state analysis for ChIP-Seq data") + (description + "This package implements functions for combinatorial and differential +analysis of ChIP-seq data. It includes uni- and multivariate peak-calling, +export to genome browser viewable files, and functi ons for enrichment +analyses.") + (license license:artistic2.0))) + (define-public r-sushi (package (name "r-sushi") |