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Diffstat (limited to 'gnu/packages/bioconductor.scm')
| -rw-r--r-- | gnu/packages/bioconductor.scm | 34 |
1 files changed, 34 insertions, 0 deletions
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index e0644aeab5..36ab137519 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -13666,6 +13666,40 @@ starting site, start codon, stop codon and transcription ending site.") visualizations for publication-quality multi-panel figures.") (license license:gpl2+))) +(define-public r-ballgown + (package + (name "r-ballgown") + (version "2.24.0") + (source + (origin + (method url-fetch) + (uri (bioconductor-uri "ballgown" version)) + (sha256 + (base32 + "0ff8z4pfgzai2q4aafclg36bhsi9jwl9xhh1p9fqhmikisscq7i1")))) + (properties `((upstream-name . "ballgown"))) + (build-system r-build-system) + (propagated-inputs + `(("r-biobase" ,r-biobase) + ("r-genomeinfodb" ,r-genomeinfodb) + ("r-genomicranges" ,r-genomicranges) + ("r-iranges" ,r-iranges) + ("r-limma" ,r-limma) + ("r-rcolorbrewer" ,r-rcolorbrewer) + ("r-rtracklayer" ,r-rtracklayer) + ("r-s4vectors" ,r-s4vectors) + ("r-sva" ,r-sva))) + (native-inputs + `(("r-knitr" ,r-knitr))) + (home-page "https://bioconductor.org/packages/ballgown") + (synopsis "Flexible, isoform-level differential expression analysis") + (description + "This package provides tools for statistical analysis of assembled +transcriptomes, including flexible differential expression analysis, +visualization of transcript structures, and matching of assembled transcripts +to annotation.") + (license license:artistic2.0))) + (define-public r-tximeta (package (name "r-tximeta") |