diff options
Diffstat (limited to 'gnu/packages/bioconductor.scm')
| -rw-r--r-- | gnu/packages/bioconductor.scm | 34 |
1 files changed, 34 insertions, 0 deletions
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index 840a9cdde8..a49a00ea1d 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -8803,6 +8803,40 @@ differential expression analysis, RNAseq data and related problems.") ;; Any version of the LGPL (license license:lgpl3+))) +(define-public r-saturn + (package + (name "r-saturn") + (version "1.8.0") + (source (origin + (method url-fetch) + (uri (bioconductor-uri "satuRn" version)) + (sha256 + (base32 + "0frm7iblxkc8ajcdqrfgsvf4krn6x8cr3mx7fnzq06xij0mqm3sj")))) + (properties `((upstream-name . "satuRn"))) + (build-system r-build-system) + (propagated-inputs (list r-biocparallel + r-boot + r-ggplot2 + r-limma + r-locfdr + r-matrix + r-pbapply + r-summarizedexperiment)) + (native-inputs (list r-knitr)) + (home-page "https://github.com/statOmics/satuRn") + (synopsis + "Analysis of differential transcript usage for scRNA-seq applications") + (description + "satuRn provides a framework for performing differential transcript usage +analyses. The package consists of three main functions. The first function, +@code{fitDTU}, fits quasi-binomial generalized linear models that model +transcript usage in different groups of interest. The second function, +@code{testDTU}, tests for differential usage of transcripts between groups of +interest. Finally, @code{plotDTU} visualizes the usage profiles of +transcripts in groups of interest.") + (license license:artistic2.0))) + (define-public r-scannotatr (package (name "r-scannotatr") |