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Diffstat (limited to 'gnu/packages/bioconductor.scm')
| -rw-r--r-- | gnu/packages/bioconductor.scm | 34 |
1 files changed, 34 insertions, 0 deletions
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index 45798e191f..5d99a4e8ce 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -6695,6 +6695,40 @@ experiments.") and visualizaton of alternative splicing events generated by rMATS.") (license license:expat))) +(define-public r-metagenomeseq + (package + (name "r-metagenomeseq") + (version "1.40.0") + (source + (origin + (method url-fetch) + (uri (bioconductor-uri "metagenomeSeq" version)) + (sha256 + (base32 "01wjw4kcm8ysa5sn3cqg4a9i5pyksnwmbdqp5fr6n2l9hllkc9jy")))) + (properties `((upstream-name . "metagenomeSeq"))) + (build-system r-build-system) + (propagated-inputs + (list r-biobase + r-foreach + r-glmnet + r-gplots + r-limma + r-matrix + r-matrixstats + r-rcolorbrewer + r-wrench)) + (native-inputs (list r-knitr)) + (home-page "https://github.com/HCBravoLab/metagenomeSeq") + (synopsis "Statistical analysis for sparse high-throughput sequencing") + (description + "MetagenomeSeq is designed to determine features (be it @acronym{OTU, +Operational Taxanomic Unit}, species, etc.) that are differentially abundant +between two or more groups of multiple samples. This package is designed to +address the effects of both normalization and under-sampling of microbial +communities on disease association detection and the testing of feature +correlations.") + (license license:artistic2.0))) + (define-public r-metaneighbor (package (name "r-metaneighbor") |