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Diffstat (limited to 'gnu/packages/bioconductor.scm')
| -rw-r--r-- | gnu/packages/bioconductor.scm | 24 |
1 files changed, 24 insertions, 0 deletions
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index e004560d58..e14f7bc93e 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -224,6 +224,30 @@ Finder (TRF mask). Only the AGAPS and AMB masks are \"active\" by default.") 1000genomes phase2 reference genome sequence (hs37d5), based on NCBI GRCh37.") (license license:artistic2.0))) +(define-public r-bsgenome-hsapiens-ncbi-grch38 + (package + (name "r-bsgenome-hsapiens-ncbi-grch38") + (version "1.3.1000") + (source + (origin + (method url-fetch) + (uri (bioconductor-uri "BSgenome.Hsapiens.NCBI.GRCh38" + version 'annotation)) + (sha256 + (base32 + "0y75qdq578fh6420vbvsbwmdw8jvr3g06qli2h3vj3pxmjykh9c1")))) + (properties `((upstream-name . "BSgenome.Hsapiens.NCBI.GRCh38"))) + (build-system r-build-system) + (propagated-inputs `(("r-bsgenome" ,r-bsgenome))) + (home-page + "https://bioconductor.org/packages/release/data/annotation/html/\ +BSgenome.Hsapiens.NCBI.GRCh38.html") + (synopsis "Full genome sequences for Homo sapiens (GRCh38)") + (description + "This package provides full genome sequences for Homo sapiens (Human) as +provided by NCBI (GRCh38, 2013-12-17) and stored in Biostrings objects.") + (license license:artistic2.0))) + (define-public r-bsgenome-hsapiens-ucsc-hg19-masked (package (name "r-bsgenome-hsapiens-ucsc-hg19-masked") |