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Diffstat (limited to 'gnu/packages/bioconductor.scm')
| -rw-r--r-- | gnu/packages/bioconductor.scm | 31 |
1 files changed, 31 insertions, 0 deletions
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index 9196866404..303a3a2450 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -22591,6 +22591,37 @@ within a certain time frame are deleted. This aims to reduce disk usage by eliminating obsolete caches generated by old versions of packages.") (license license:gpl3))) +(define-public r-basic4cseq + (package + (name "r-basic4cseq") + (version "1.38.0") + (source + (origin + (method url-fetch) + (uri (bioconductor-uri "Basic4Cseq" version)) + (sha256 + (base32 "1vlrrkg885w77w34m2q8hngr95hhh5bkw9hrzyhnp39igjkcwqx4")))) + (properties `((upstream-name . "Basic4Cseq"))) + (build-system r-build-system) + (propagated-inputs + (list r-biostrings + r-bsgenome-ecoli-ncbi-20080805 + r-catools + r-genomicalignments + r-genomicranges + r-rcircos)) + (home-page "https://bioconductor.org/packages/Basic4Cseq") + (synopsis "Analyzing 4C-seq data") + (description + "Basic4Cseq is an R package for basic filtering, analysis and subsequent +visualization of @acronym{4C-seq, circular chromosome conformation capture +sequencing} data. Virtual fragment libraries can be created for any BSGenome +package, and filter functions for both reads and fragments and basic quality +controls are included. Fragment data in the vicinity of the experiment's +viewpoint can be visualized as a coverage plot based on a running median +approach and a multi-scale contact profile.") + (license license:lgpl3))) + (define-public r-basilisk-utils (package (name "r-basilisk-utils") |