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Diffstat (limited to 'gnu/packages/bioconductor.scm')
| -rw-r--r-- | gnu/packages/bioconductor.scm | 38 |
1 files changed, 38 insertions, 0 deletions
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index 95c722ac40..e7f11dead3 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -1030,3 +1030,41 @@ maps.") "This package provides tools to parse Illumina Sequence Analysis Viewer (SAV) files, access data, and generate QC plots.") (license license:agpl3+))) + +(define-public r-chipexoqual + (package + (name "r-chipexoqual") + (version "1.6.0") + (source + (origin + (method url-fetch) + (uri (bioconductor-uri "ChIPexoQual" version)) + (sha256 + (base32 + "1773bpiybn4g9jlv46z29x19q4dpcvn7lairr3lq5pdqbqmz5hnp")))) + (properties `((upstream-name . "ChIPexoQual"))) + (build-system r-build-system) + (propagated-inputs + `(("r-biocparallel" ,r-biocparallel) + ("r-biovizbase" ,r-biovizbase) + ("r-broom" ,r-broom) + ("r-data-table" ,r-data-table) + ("r-dplyr" ,r-dplyr) + ("r-genomeinfodb" ,r-genomeinfodb) + ("r-genomicalignments" ,r-genomicalignments) + ("r-genomicranges" ,r-genomicranges) + ("r-ggplot2" ,r-ggplot2) + ("r-hexbin" ,r-hexbin) + ("r-iranges" ,r-iranges) + ("r-rcolorbrewer" ,r-rcolorbrewer) + ("r-rmarkdown" ,r-rmarkdown) + ("r-rsamtools" ,r-rsamtools) + ("r-s4vectors" ,r-s4vectors) + ("r-scales" ,r-scales) + ("r-viridis" ,r-viridis))) + (home-page "https://github.com/keleslab/ChIPexoQual") + (synopsis "Quality control pipeline for ChIP-exo/nexus data") + (description + "This package provides a quality control pipeline for ChIP-exo/nexus +sequencing data.") + (license license:gpl2+))) |