diff options
Diffstat (limited to 'gnu/packages/bioconductor.scm')
| -rw-r--r-- | gnu/packages/bioconductor.scm | 32 |
1 files changed, 32 insertions, 0 deletions
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index 3e6df50653..788e1e7def 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -29,6 +29,38 @@ #:use-module (gnu packages statistics) #:use-module (gnu packages bioinformatics)) +(define-public r-bsgenome-dmelanogaster-ucsc-dm6 + (package + (name "r-bsgenome-dmelanogaster-ucsc-dm6") + (version "1.4.1") + (source (origin + (method url-fetch) + ;; We cannot use bioconductor-uri here because this tarball is + ;; located under "data/annotation/" instead of "bioc/". + (uri (string-append "https://www.bioconductor.org/packages/" + "release/data/annotation/src/contrib/" + "BSgenome.Dmelanogaster.UCSC.dm6_" + version ".tar.gz")) + (sha256 + (base32 + "1bhj0rdgf7lspw4xby9y9mf7v7jxxz8001bc8vw8kf04rjsx6060")))) + (properties + `((upstream-name . "BSgenome.Dmelanogaster.UCSC.dm6"))) + (build-system r-build-system) + ;; As this package provides little more than a very large data file it + ;; doesn't make sense to build substitutes. + (arguments `(#:substitutable? #f)) + (propagated-inputs + `(("r-bsgenome" ,r-bsgenome))) + (home-page + "https://www.bioconductor.org/packages/BSgenome.Dmelanogaster.UCSC.dm6/") + (synopsis "Full genome sequences for Fly") + (description + "This package provides full genome sequences for Drosophila +melanogaster (Fly) as provided by UCSC (dm6) and stored in Biostrings +objects.") + (license license:artistic2.0))) + (define-public r-hpar (package (name "r-hpar") |