diff options
Diffstat (limited to 'gnu/packages/bioconductor.scm')
-rw-r--r-- | gnu/packages/bioconductor.scm | 32 |
1 files changed, 28 insertions, 4 deletions
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index a1f7b2d2a8..29dac5b0f1 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -2915,14 +2915,14 @@ to multiple hypothesis correction.") (define-public r-dose (package (name "r-dose") - (version "3.10.1") + (version "3.10.2") (source (origin (method url-fetch) (uri (bioconductor-uri "DOSE" version)) (sha256 (base32 - "0ab7mgj42fg6608qkciyqivr1n8s8r5ibvp0z3jfclrnyx6cl0w1")))) + "06jm1mnfd92s84f21562vsmj6jfkravfqf4lcxx2lk7s4ll66znj")))) (properties `((upstream-name . "DOSE"))) (build-system r-build-system) (propagated-inputs @@ -3406,14 +3406,14 @@ type and symbol colors.") (define-public r-genomicscores (package (name "r-genomicscores") - (version "1.8.0") + (version "1.8.1") (source (origin (method url-fetch) (uri (bioconductor-uri "GenomicScores" version)) (sha256 (base32 - "17bd61icfycc61b5dij1968h026w7vfd9miwdcbppak1j6s08idq")))) + "0xgv5h6hwr4p2p05z8vzhivy97gfirm4rj1ihb5c8fhgc5vp85dy")))) (properties `((upstream-name . "GenomicScores"))) (build-system r-build-system) (propagated-inputs @@ -4745,3 +4745,27 @@ enhancers. The annotatr package provides an easy way to summarize and visualize the intersection of genomic sites/regions with genomic annotations.") (license license:gpl3))) + +(define-public r-rsubread + (package + (name "r-rsubread") + (version "1.34.4") + (source + (origin + (method url-fetch) + (uri (bioconductor-uri "Rsubread" version)) + (sha256 + (base32 + "1230p8nsakifmpsqfiaj8rpm7npa8ab903mfjmayfa71n6yzvcbs")))) + (properties `((upstream-name . "Rsubread"))) + (build-system r-build-system) + (inputs `(("zlib" ,zlib))) + (home-page "https://bioconductor.org/packages/Rsubread/") + (synopsis "Subread sequence alignment and counting for R") + (description + "This package provides tools for alignment, quantification and analysis +of second and third generation sequencing data. It includes functionality for +read mapping, read counting, SNP calling, structural variant detection and +gene fusion discovery. It can be applied to all major sequencing techologies +and to both short and long sequence reads.") + (license license:gpl3))) |