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Diffstat (limited to 'gnu/packages/bioconductor.scm')
| -rw-r--r-- | gnu/packages/bioconductor.scm | 22 |
1 files changed, 22 insertions, 0 deletions
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index 2c6251bcc3..5401947a9a 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -4808,6 +4808,28 @@ domains etc.) from quantification of all types of RNASeq by tools such as Kallisto, Salmon, StringTie, Cufflinks/Cuffdiff etc.") (license license:gpl2+))) +;; This is a CRAN package, but it depends on qvalue from Bioconductor. +(define-public r-isva + (package + (name "r-isva") + (version "1.9") + (source (origin + (method url-fetch) + (uri (cran-uri "isva" version)) + (sha256 + (base32 + "05qx9q0kg4ma23v4abhihw0vz017nq6hv2jzsiqx4d20ngh1dl4z")))) + (properties `((upstream-name . "isva"))) + (build-system r-build-system) + (propagated-inputs (list r-fastica r-jade r-qvalue)) + (home-page "https://cran.r-project.org/package=isva") + (synopsis "Independent surrogate variable analysis") + (description + "Independent Surrogate Variable Analysis is an algorithm for feature +selection in the presence of potential confounding factors (see Teschendorff +AE et al 2011, <doi: 10.1093/bioinformatics/btr171>).") + (license license:gpl2))) + (define-public r-italics (package (name "r-italics") |