diff options
Diffstat (limited to 'gnu/packages/bioinformatics.scm')
| -rw-r--r-- | gnu/packages/bioinformatics.scm | 15 |
1 files changed, 7 insertions, 8 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index f51c247b40..f4eb281cb7 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -10724,14 +10724,14 @@ block processing.") (define-public r-rhdf5lib (package (name "r-rhdf5lib") - (version "1.0.0") + (version "1.2.1") (source (origin (method url-fetch) (uri (bioconductor-uri "Rhdf5lib" version)) (sha256 (base32 - "0kkc4rprjbqn2wvbx4d49kk9l91vihccxbl4843qr1wqk6v33r1w")))) + "1y59acac6v8hrhv84gghn9ifsni9xxxacaj177rrl4frmkrz4x3c")))) (properties `((upstream-name . "Rhdf5lib"))) (build-system r-build-system) (arguments @@ -10742,10 +10742,10 @@ block processing.") (for-each delete-file '("configure" "configure.ac")) ;; Do not make other packages link with the proprietary libsz. (substitute* "R/zzz.R" - (("'%s/libhdf5_cpp.a %s/libhdf5.a %s/libsz.a'") - "'%s/libhdf5_cpp.a %s/libhdf5.a %s/libhdf5.a'") - (("'%s/libhdf5.a %s/libsz.a'") - "'%s/libhdf5.a %s/libhdf5.a'")) + (("'%s/libhdf5_cpp.a %s/libhdf5.a %s/libsz.a -lz'") + "'%s/libhdf5_cpp.a %s/libhdf5.a %s/libhdf5.a -lz'") + (("'%s/libhdf5.a %s/libsz.a -lz'") + "'%s/libhdf5.a %s/libhdf5.a -lz'")) (with-directory-excursion "src" (invoke "tar" "xvf" (assoc-ref inputs "hdf5-source")) (rename-file (string-append "hdf5-" ,(package-version hdf5)) @@ -10772,8 +10772,7 @@ block processing.") (("HDF5_INCLUDE=.*") "HDF5_INCLUDE=./hdf5/src\n") ;; szip is non-free software (("cp \\$\\{SZIP_LIB\\}.*") "") - (("PKG_LIBS = \\$\\{HDF5_LIB\\} \\$\\{SZIP_LIB\\}") - "PKG_LIBS = ${HDF5_LIB}\n"))) + (("\\$\\{USER_LIB_DIR\\}libsz.a") ""))) #t))))) (inputs `(("zlib" ,zlib))) |