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Diffstat (limited to 'gnu/packages/bioinformatics.scm')
| -rw-r--r-- | gnu/packages/bioinformatics.scm | 33 |
1 files changed, 33 insertions, 0 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index fa35531868..4e9397e14e 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -7394,6 +7394,39 @@ library implementing most of the pipeline's features.") @dfn{RNA-centric annotation system} (RCAS).") (license license:agpl3+))) +(define-public r-mutationalpatterns + (package + (name "r-mutationalpatterns") + (version "1.0.0") + (source + (origin + (method url-fetch) + (uri (bioconductor-uri "MutationalPatterns" version)) + (sha256 + (base32 + "1a3c2bm0xx0q4gf98jiw74msmdf2fr8rbsdysd5ww9kqlzmsbr17")))) + (build-system r-build-system) + (propagated-inputs + `(("r-biocgenerics" ,r-biocgenerics) + ("r-biostrings" ,r-biostrings) + ("r-genomicranges" ,r-genomicranges) + ("r-genomeinfodb" ,r-genomeinfodb) + ("r-ggplot2" ,r-ggplot2) + ("r-gridextra" ,r-gridextra) + ("r-iranges" ,r-iranges) + ("r-nmf" ,r-nmf) + ("r-plyr" ,r-plyr) + ("r-pracma" ,r-pracma) + ("r-reshape2" ,r-reshape2) + ("r-summarizedexperiment" ,r-summarizedexperiment) + ("r-variantannotation" ,r-variantannotation))) + (home-page "http://bioconductor.org/packages/MutationalPatterns/") + (synopsis "Extract and visualize mutational patterns in genomic data") + (description "This package provides an extensive toolset for the +characterization and visualization of a wide range of mutational patterns +in SNV base substitution data.") + (license license:expat))) + (define-public emboss (package (name "emboss") |