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Diffstat (limited to 'gnu/packages/bioinformatics.scm')
| -rw-r--r-- | gnu/packages/bioinformatics.scm | 31 |
1 files changed, 31 insertions, 0 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index 1f018befe6..66e790367d 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -326,6 +326,37 @@ instance, it implements several methods to assess contig-wise read coverage.") BAM files.") (license license:expat))) +(define-public bamutils + (package + (name "bamutils") + (version "1.0.13") + (source (origin + (method url-fetch) + (uri + (string-append + "https://genome.sph.umich.edu/w/images/7/70/" + "BamUtilLibStatGen." version ".tgz")) + (sha256 + (base32 + "0asr1kmjbr3cyf4hkg865y8c2s30v87xvws4q6c8pyfi6wfd1h8n")))) + (build-system gnu-build-system) + (arguments + `(#:tests? #f ; There are no tests. + #:make-flags `("USER_WARNINGS=-std=gnu++98" + ,(string-append "INSTALLDIR=" + (assoc-ref %outputs "out") "/bin")) + #:phases + (modify-phases %standard-phases + (delete 'configure)))) + (inputs + `(("zlib" ,zlib))) + (home-page "https://genome.sph.umich.edu/wiki/BamUtil") + (synopsis "Programs for working on SAM/BAM files") + (description "This package provides several programs that perform +operations on SAM/BAM files. All of these programs are built into a +single executable called @code{bam}.") + (license license:gpl3+))) + (define-public bcftools (package (name "bcftools") |