diff options
Diffstat (limited to 'gnu/packages/bioinformatics.scm')
| -rw-r--r-- | gnu/packages/bioinformatics.scm | 33 |
1 files changed, 33 insertions, 0 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index b1258220b4..551da4eafc 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -185,6 +185,39 @@ pybedtools extends BEDTools by offering feature-level manipulations from with Python.") (license license:gpl2+))) +(define-public python-biopython + (package + (name "python-biopython") + (version "1.65") + (source (origin + (method url-fetch) + (uri (string-append + "http://biopython.org/DIST/biopython-" + version ".tar.gz")) + (sha256 + (base32 + "13m8s9jkrw40zvdp1rl709n6lmgdh4f52aann7gzr6sfp0fwhg26")))) + (build-system python-build-system) + (inputs + `(("python-numpy" ,python-numpy))) + (native-inputs + `(("python-setuptools" ,python2-setuptools))) + (home-page "http://biopython.org/") + (synopsis "Tools for biological computation in Python") + (description + "Biopython is a set of tools for biological computation including parsers +for bioinformatics files into Python data structures; interfaces to common +bioinformatics programs; a standard sequence class and tools for performing +common operations on them; code to perform data classification; code for +dealing with alignments; code making it easy to split up parallelizable tasks +into separate processes; and more.") + (license (license:non-copyleft "http://www.biopython.org/DIST/LICENSE")))) + +(define-public python2-biopython + (package (inherit (package-with-python2 python-biopython)) + (inputs + `(("python2-numpy" ,python2-numpy))))) + (define-public bowtie (package (name "bowtie") |