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Diffstat (limited to 'gnu/packages/bioinformatics.scm')
| -rw-r--r-- | gnu/packages/bioinformatics.scm | 31 |
1 files changed, 31 insertions, 0 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index a919da8b51..2d6251ac92 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -368,6 +368,37 @@ particular, reads spanning multiple exons.") from high-throughput sequencing assays.") (license license:gpl3+))) +(define-public macs + (package + (name "macs") + (version "2.1.0.20140616") + (source (origin + (method url-fetch) + (uri (string-append + "https://pypi.python.org/packages/source/M/MACS2/MACS2-" + version ".tar.gz")) + (sha256 + (base32 + "11lmiw6avqhwn75sn59g4lfkrr2kk20r3rgfbx9xfqb8rg9mi2n6")))) + (build-system python-build-system) + (arguments + `(#:python ,python-2 ; only compatible with Python 2.7 + #:tests? #f)) ; no test target + (inputs + `(("python-numpy" ,python2-numpy))) + (native-inputs + `(("python-setuptools" ,python2-setuptools))) + (home-page "http://github.com/taoliu/MACS/") + (synopsis "Model based analysis for ChIP-Seq data") + (description + "MACS is an implementation of a ChIP-Seq analysis algorithm for +identifying transcript factor binding sites named Model-based Analysis of +ChIP-Seq (MACS). MACS captures the influence of genome complexity to evaluate +the significance of enriched ChIP regions and it improves the spatial +resolution of binding sites through combining the information of both +sequencing tag position and orientation.") + (license license:bsd-3))) + (define-public rseqc (package (name "rseqc") |