diff options
Diffstat (limited to 'gnu/packages/bioinformatics.scm')
| -rw-r--r-- | gnu/packages/bioinformatics.scm | 28 |
1 files changed, 13 insertions, 15 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index 28dbdca13b..23eba74175 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -72,6 +72,7 @@ #:use-module (gnu packages graph) #:use-module (gnu packages groff) #:use-module (gnu packages guile) + #:use-module (gnu packages guile-xyz) #:use-module (gnu packages haskell) #:use-module (gnu packages haskell-check) #:use-module (gnu packages haskell-web) @@ -4503,9 +4504,7 @@ files and writing bioinformatics applications.") (source (origin (method url-fetch) - (uri (string-append - "https://pypi.python.org/packages/source/W/WarpedLMM/WarpedLMM-" - version ".zip")) + (uri (pypi-uri "WarpedLMM" version ".zip")) (sha256 (base32 "1agfz6zqa8nc6cw47yh0s3y14gkpa9wqazwcj7mwwj3ffnw39p3j")))) @@ -6021,7 +6020,7 @@ application of SortMeRNA is filtering rRNA from metatranscriptomic data.") (define-public star (package (name "star") - (version "2.6.0c") + (version "2.7.0a") (source (origin (method git-fetch) (uri (git-reference @@ -6030,7 +6029,7 @@ application of SortMeRNA is filtering rRNA from metatranscriptomic data.") (file-name (string-append name "-" version "-checkout")) (sha256 (base32 - "04cj6jw8d9q6lk9c78wa4fky6jdlicf1d13plq7182h8vqiz8p59")) + "1yx28gra6gqdx1ps5y8mpdinsn8r0dhsc2m3gcvjfrk71i9yhd6l")) (modules '((guix build utils))) (snippet '(begin @@ -7183,14 +7182,14 @@ checks on R packages that are to be submitted to the Bioconductor repository.") (define-public r-optparse (package (name "r-optparse") - (version "1.6.0") + (version "1.6.1") (source (origin (method url-fetch) (uri (cran-uri "optparse" version)) (sha256 (base32 - "1d7v5gl45x4amsfmzn5zyyffyqlc7a82h01szlnda22viyxids0h")))) + "04vyb6dhcga30mvghsg1p052jmf69xqxkvh3hzqz7dscyppy76w1")))) (build-system r-build-system) (propagated-inputs `(("r-getopt" ,r-getopt))) @@ -7388,13 +7387,13 @@ CAGE.") (define-public r-variantannotation (package (name "r-variantannotation") - (version "1.28.8") + (version "1.28.10") (source (origin (method url-fetch) (uri (bioconductor-uri "VariantAnnotation" version)) (sha256 (base32 - "0gf36lr9xy3zmcc4rxs5bi2ccrrc7b6wqp6p3cvnclgif4i0l66k")))) + "0kxf583cgkdz1shi85r0mpnfxmzi7s5f6srd1czbdl2iibvrm8jn")))) (properties `((upstream-name . "VariantAnnotation"))) (inputs @@ -7829,13 +7828,13 @@ as well as query and modify the browser state, such as the current viewport.") (define-public r-genomicfeatures (package (name "r-genomicfeatures") - (version "1.34.1") + (version "1.34.2") (source (origin (method url-fetch) (uri (bioconductor-uri "GenomicFeatures" version)) (sha256 (base32 - "0slq6hv5bmc3bgrl824jzmr6db3fvaj6b7ihwmdn76pgqqbq2fq6")))) + "0qs94b0ywrjyc9m1jykrbch3lb07576m508dikvx18vwn304mban")))) (properties `((upstream-name . "GenomicFeatures"))) (build-system r-build-system) @@ -8486,7 +8485,7 @@ throughput genetic sequencing data sets using regression methods.") (define-public r-qtl (package (name "r-qtl") - (version "1.42-8") + (version "1.44-9") (source (origin (method url-fetch) @@ -8494,7 +8493,7 @@ throughput genetic sequencing data sets using regression methods.") version ".tar.gz")) (sha256 (base32 - "1l528dwvfpdlr05imrrm4rq32axp6hld9nqm6mm43kn5n7z2f5k6")))) + "03lmvydln8b7666b6w46qbryhf83vsd11d4y2v95rfgvqgq66l1i")))) (build-system r-build-system) (home-page "http://rqtl.org/") (synopsis "R package for analyzing QTL experiments in genetics") @@ -9131,8 +9130,7 @@ may optionally be provided to further inform the peak-calling process.") (version "1.0.9") (source (origin (method url-fetch) - (uri (string-append "https://pypi.python.org/packages/source/P" - "/PePr/PePr-" version ".tar.gz")) + (uri (pypi-uri "PePr" version)) (sha256 (base32 "0qxjfdpl1b1y53nccws2d85f6k74zwmx8y8sd9rszcqhfayx6gdx")))) |