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Diffstat (limited to 'gnu/packages/bioinformatics.scm')
| -rw-r--r-- | gnu/packages/bioinformatics.scm | 26 |
1 files changed, 26 insertions, 0 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index 426926a37c..e663ff2591 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -14272,6 +14272,32 @@ sequencing (e.g. mapping or base/indel alignment uncertainty), which are usually ignored by other methods or only used for filtering.") (license license:expat))) +(define-public ivar + (package + (name "ivar") + (version "1.3.1") + (source (origin + (method git-fetch) + (uri (git-reference + (url "https://github.com/andersen-lab/ivar") + (commit (string-append "v" version)))) + (file-name (git-file-name name version)) + (sha256 + (base32 + "044xa0hm3b8fga64csrdx05ih8w7kwmvcdrdrhkg8j11ml4bi4xv")))) + (build-system gnu-build-system) + (inputs + `(("htslib" ,htslib) + ("zlib" ,zlib))) + (native-inputs + `(("autoconf" ,autoconf) + ("automake" ,automake))) + (home-page "https://andersen-lab.github.io/ivar/html/") + (synopsis "Tools for amplicon-based sequencing") + (description "iVar is a computational package that contains functions +broadly useful for viral amplicon-based sequencing. ") + (license license:gpl3+))) + (define-public python-pyliftover (package (name "python-pyliftover") |