diff options
Diffstat (limited to 'gnu/packages/cran.scm')
| -rw-r--r-- | gnu/packages/cran.scm | 892 |
1 files changed, 490 insertions, 402 deletions
diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index 221a81612c..c9ce73b1de 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -194,14 +194,14 @@ models} (GLMM).") (define-public r-brio (package (name "r-brio") - (version "1.1.3") + (version "1.1.4") (source (origin (method url-fetch) (uri (cran-uri "brio" version)) (sha256 (base32 - "1inwzvlf6zj6gi47gd0byzqv02qajb3l475z8pjvx2b1hm0r1a7a")))) + "1s0q1qk3w3fwf7gn4xfwhf8i8yqqb6z096x6xqsj8av8924z7fqc")))) (properties `((upstream-name . "brio"))) (build-system r-build-system) (home-page "https://github.com/r-lib/brio") @@ -212,6 +212,38 @@ functions always read and write UTF-8 (8-bit Unicode Transformation Format) files and provide more explicit control over line endings.") (license license:expat))) +(define-public r-broom-helpers + (package + (name "r-broom-helpers") + (version "1.14.0") + (source + (origin + (method url-fetch) + (uri (cran-uri "broom.helpers" version)) + (sha256 + (base32 "14vaqxv12yrvqllp8552nx68wk2qfjcy1iy7bajkspgdpwsjzhfd")))) + (properties `((upstream-name . "broom.helpers"))) + (build-system r-build-system) + (propagated-inputs (list r-broom + r-cli + r-dplyr + r-labelled + r-lifecycle + r-purrr + r-rlang + r-stringr + r-tibble + r-tidyr)) + (native-inputs (list r-knitr)) + (home-page "https://larmarange.github.io/broom.helpers/") + (synopsis "Helpers for Model Coefficients Tibbles") + (description + "This package provides suite of functions to work with regression model +@code{broom::tidy()} tibbles. The suite includes functions to group +regression model terms by variable, insert reference and header rows for +categorical variables, add variable labels, and more.") + (license license:gpl3+))) + (define-public r-ca (package (name "r-ca") @@ -391,13 +423,13 @@ labels on the node can also be achieved.") (define-public r-collapse (package (name "r-collapse") - (version "2.0.6") + (version "2.0.7") (source (origin (method url-fetch) (uri (cran-uri "collapse" version)) (sha256 - (base32 "0azyl6667dzwns9knp3fplv6f9nav36wsrv42qzv90p5kzcaa872")))) + (base32 "0szvpg4fnzyihcp1rpv4nd3vb1iv902w5m955a7x48k8m50lk1bc")))) (properties `((upstream-name . "collapse"))) (build-system r-build-system) (propagated-inputs (list r-rcpp)) @@ -564,13 +596,13 @@ wrangling backend for the packages in the @code{easystats} ecosystem.") (define-public r-dbscan (package (name "r-dbscan") - (version "1.1-11") + (version "1.1-12") (source (origin (method url-fetch) (uri (cran-uri "dbscan" version)) (sha256 - (base32 "0bz66lvvg7290c5260ph92k4r7adgisbx3vml9096qhjwrkqwjgh")))) + (base32 "1snfcf5jy3chh5nmvn7ashhlyv35nkajlfrlk9kzpy4jnfyv3y2n")))) (properties `((upstream-name . "dbscan"))) (build-system r-build-system) (propagated-inputs (list r-rcpp)) @@ -880,13 +912,13 @@ axis breaks of a ggplot.") (define-public r-ggdist (package (name "r-ggdist") - (version "3.3.0") + (version "3.3.1") (source (origin (method url-fetch) (uri (cran-uri "ggdist" version)) (sha256 - (base32 "0b15b972wrllsvqqn0nc2c81fd9jl618fvqsfi50hjxwwpdach8l")))) + (base32 "0agr1l65s7vimdb88a7n3ahr6pp9ng5zf9mypdic26vhaaifh1b7")))) (properties `((upstream-name . "ggdist"))) (build-system r-build-system) (propagated-inputs (list r-cli @@ -896,6 +928,7 @@ axis breaks of a ggplot.") r-glue r-numderiv r-quadprog + r-rcpp r-rlang r-scales r-tibble @@ -934,6 +967,40 @@ samples) are easily visualized.") "Ggfittext is a ggplot2 extension for fitting text into boxes.") (license license:gpl2))) +(define-public r-ggstats + (package + (name "r-ggstats") + (version "0.5.1") + (source + (origin + (method url-fetch) + (uri (cran-uri "ggstats" version)) + (sha256 + (base32 "1jcydapwarl1cxinm80rjmmli8vmlid8alnh6w484bh7nwzmcsic")))) + (properties `((upstream-name . "ggstats"))) + (build-system r-build-system) + (propagated-inputs (list r-broom-helpers + r-cli + r-dplyr + r-forcats + r-ggplot2 + r-lifecycle + r-magrittr + r-patchwork + r-purrr + r-rlang + r-scales + r-stringr + r-tidyr)) + (native-inputs (list r-knitr)) + (home-page "https://larmarange.github.io/ggstats/") + (synopsis "Extension to ggplot2 for plotting stats") + (description + "This package provides new statistics, new geometries and new positions +for ggplot2 and a suite of functions to facilitate the creation of statistical +plots.") + (license license:gpl3+))) + (define-public r-ggstatsplot (package (name "r-ggstatsplot") @@ -1772,14 +1839,14 @@ similar rank-based tests for equal probability distributions due to Neuhauser (define-public r-v8 (package (name "r-v8") - (version "4.4.0") + (version "4.4.1") (source (origin (method url-fetch) (uri (cran-uri "V8" version)) (sha256 (base32 - "0ilg9ihx1mp9zj8023rh3lj875vqy253v9gbn1bw61h2p47w4nv3")))) + "129spn531m9arz7v8vyfsrvc69hg0w39fdnhjxrcrww37l9xcvav")))) (properties `((upstream-name . "V8") (updater-extra-inputs . ("libnode")))) @@ -2050,13 +2117,13 @@ known as Dynamic Linear Models.") (define-public r-zcompositions (package (name "r-zcompositions") - (version "1.4.1") + (version "1.5") (source (origin (method url-fetch) (uri (cran-uri "zCompositions" version)) (sha256 (base32 - "1l9hj37x54b4vzbcg2051nfli5rh65llm27hygc2vx7yyi6q75ma")))) + "1hfgw3h3si5qkynzc520648pskw26bckcji1qgi5fkag6fd8l08p")))) (properties `((upstream-name . "zCompositions"))) (build-system r-build-system) (propagated-inputs @@ -2406,13 +2473,13 @@ axis} (SMA), and @dfn{ranged major axis} (RMA).") (define-public r-ggpmisc (package (name "r-ggpmisc") - (version "0.5.4-1") + (version "0.5.5") (source (origin (method url-fetch) (uri (cran-uri "ggpmisc" version)) (sha256 (base32 - "0f6n48vnqnqqd7xhb4mdcwy4h9wz0icnynjigcbzagrrxmi2r64x")))) + "1j49q1fbihxir5q5llqwyga111j3lggifzjk3cvq8lphim4c3jia")))) (build-system r-build-system) (propagated-inputs (list r-confintr @@ -2443,17 +2510,18 @@ respecting the grammar of its graphics paradigm.") (define-public r-ggside (package (name "r-ggside") - (version "0.2.2") + (version "0.2.3") (source (origin (method url-fetch) (uri (cran-uri "ggside" version)) (sha256 (base32 - "1z50z4xpxfpqdz26hja6xw3q403p00cr5qawjxl0qg4jixl7j65p")))) + "0qj564rqxw8fn5h00wwmkvk6p3x60r64gpvxw9yrb5lvcykgsj8q")))) (properties `((upstream-name . "ggside"))) (build-system r-build-system) (propagated-inputs - (list r-ggplot2 + (list r-cli + r-ggplot2 r-glue r-gtable r-rlang @@ -2636,22 +2704,24 @@ available as companion packages.") (define-public r-scales (package (name "r-scales") - (version "1.2.1") + (version "1.3.0") (source (origin (method url-fetch) (uri (cran-uri "scales" version)) (sha256 - (base32 "027daznawr9dy0z9s99lh64i4am691hdir01n7gr7vmgpmnkwiar")))) + (base32 "122qyd88qr8cc8h3k46xpygm00inqpm55zdy0b7535958imhygmk")))) (build-system r-build-system) (propagated-inputs - (list r-farver + (list r-cli + r-farver + r-glue r-labeling r-lifecycle r-munsell + r-r6 r-rcolorbrewer r-rlang - r-r6 r-viridislite)) (home-page "https://github.com/hadley/scales") (synopsis "Scale functions for visualization") @@ -2876,13 +2946,13 @@ control over dimensions and appearance.") (define-public r-philentropy (package (name "r-philentropy") - (version "0.7.0") + (version "0.8.0") (source (origin (method url-fetch) (uri (cran-uri "philentropy" version)) (sha256 (base32 - "1dw46p2bk68hqbc44629lywg5r1mdaz37ahccgmsx07fg8rf4wnf")))) + "0gmycszk86mc9clmxfdrspqh5z0g3cw2cgzaaqngxx38h68x99is")))) (properties `((upstream-name . "philentropy"))) (build-system r-build-system) (propagated-inputs (list r-kernsmooth r-poorman r-rcpp)) @@ -3247,13 +3317,13 @@ similar to OLS.") (define-public r-mboost (package (name "r-mboost") - (version "2.9-8") + (version "2.9-9") (source (origin (method url-fetch) (uri (cran-uri "mboost" version)) (sha256 (base32 - "1jyigxi5lzcaa6psc8lyvw2b6ylldqlnps3jlvjrl9zr6336nk6n")))) + "1apcd90xsr9hl5f1szhyibdx61zi4p6s9bvag8bdk2yj4kqq6fmz")))) (build-system r-build-system) (propagated-inputs (list r-lattice @@ -3467,13 +3537,13 @@ data types as well.") (define-public r-tgp (package (name "r-tgp") - (version "2.4-21") + (version "2.4-22") (source (origin (method url-fetch) (uri (cran-uri "tgp" version)) (sha256 (base32 - "12ifd7rm3wskhbpnhfvz92z3graxzryq0iy1jiqmdk6bvhxkiww8")))) + "0gpndjq2xiic6fb5187f4hgrqj3477pd83caajnw3yy9wan4vly6")))) (properties `((upstream-name . "tgp"))) (build-system r-build-system) (propagated-inputs (list r-maptree)) @@ -3490,13 +3560,13 @@ noisy black-box functions.") (define-public r-tgstat (package (name "r-tgstat") - (version "2.3.24") + (version "2.3.25") (source (origin (method url-fetch) (uri (cran-uri "tgstat" version)) (sha256 - (base32 "0czd3j7z30jgb03813s0jc0701ypnwpkkq7var6n6f6cj7sdvc0l")))) + (base32 "07hdw3n4l88nr0x2a2qnjich4cfihgd0fk65ar3crgdahjcv9vn4")))) (properties `((upstream-name . "tgstat"))) (build-system r-build-system) (native-inputs (list r-knitr)) @@ -3948,13 +4018,13 @@ into a pipeline of data manipulation and visualisation.") (define-public r-morpho (package (name "r-morpho") - (version "2.11") + (version "2.12") (source (origin (method url-fetch) (uri (cran-uri "Morpho" version)) (sha256 (base32 - "1c69n9284chygd375gkir4nk5bjglamhfyk2lz4z3kzy3z25qw50")))) + "1hg1jr0y11v93mqg2kn8n841nbsiffhyyr2kswj7kk664vlpril0")))) (properties `((upstream-name . "Morpho"))) (build-system r-build-system) (propagated-inputs (list r-bezier @@ -4047,13 +4117,13 @@ Zucchini.") (define-public r-httpuv (package (name "r-httpuv") - (version "1.6.12") + (version "1.6.13") (source (origin (method url-fetch) (uri (cran-uri "httpuv" version)) (sha256 (base32 - "0x2y5yjj1ha99dv5c8j6pxm8fqhdcx010jl4rcw2qw20qaqp5ndi")) + "0prvd2mv4rliqm0ldaldd6yjxy04qvxnqyhfxlk2c1lanmxzjvnb")) (modules '((guix build utils))) ;; Cannot unbundle http-parser, because it contains local ;; modifications. @@ -4159,13 +4229,13 @@ Notation (JSON) using the rapidjsonr library.") (define-public r-jsonlite (package (name "r-jsonlite") - (version "1.8.7") + (version "1.8.8") (source (origin (method url-fetch) (uri (cran-uri "jsonlite" version)) (sha256 (base32 - "07301wdpf014m8pfr7x3zwaj07pmin0rfax0irljimvj9dwbfhkx")))) + "196an37f118qw43vyfaygh01dirh3hyz84ix8bbs6fsck0b17qkx")))) (build-system r-build-system) (native-inputs (list r-knitr r-r-rsp)) @@ -4248,13 +4318,13 @@ a list of p-values.") (define-public r-htmlwidgets (package (name "r-htmlwidgets") - (version "1.6.2") + (version "1.6.4") (source (origin (method url-fetch) (uri (cran-uri "htmlwidgets" version)) (sha256 (base32 - "1g0h5dqzr22jyxr6fkxyf8njq3f4wxp7nrwhqw1w5yy0lir1dnkz")))) + "1l0f7bz2icixsrgg5fg8k09mv0nq9vn5ch1fywkaqpa8605qzc3w")))) (build-system r-build-system) (propagated-inputs (list r-htmltools r-jsonlite @@ -4331,13 +4401,13 @@ LaTeX.") (define-public r-curl (package (name "r-curl") - (version "5.1.0") + (version "5.2.0") (source (origin (method url-fetch) (uri (cran-uri "curl" version)) (sha256 (base32 - "15xsxirb5k4pqc8v5kg0i3v1pnhy4wzcljxagp703gc59fl8s8ap")))) + "12gldddkfkdwm6h0lb1pjrcpqc9kmqwfwz18wn9brilzbw8s9nxz")))) (properties `((upstream-name . "curl") (updater-extra-inputs . ("curl")))) @@ -4486,14 +4556,14 @@ rules and utility functions for adaptive GH quadrature.") (define-public r-rstpm2 (package (name "r-rstpm2") - (version "1.6.2") + (version "1.6.3") (source (origin (method url-fetch) (uri (cran-uri "rstpm2" version)) (sha256 (base32 - "1qxd1ffim2nsa16jqnxbq2imhicdhc3z7b55wz549zybdv2whkh6")))) + "07q3n9hv8azwiipggyb6ykhvb8qy10s4nkp5irv76d54fsl7jq2y")))) (properties `((upstream-name . "rstpm2"))) (build-system r-build-system) (propagated-inputs @@ -4502,6 +4572,7 @@ rules and utility functions for adaptive GH quadrature.") r-desolve r-fastghquad r-mgcv + r-mvtnorm r-rcpp r-rcpparmadillo r-survival)) @@ -4578,13 +4649,13 @@ jQuery.") (define-public r-jqr (package (name "r-jqr") - (version "1.3.1") + (version "1.3.3") (source (origin (method url-fetch) (uri (cran-uri "jqr" version)) (sha256 (base32 - "0dlz9wwkgz06mnnmwaq4pr68x7zywp2iczfw0bjpzrgpbzkn2972")))) + "1w6806yx763xb0xaqh8ms20gz4h1y3c2s11lgsq3x8h6bahimn5s")))) (properties `((upstream-name . "jqr"))) (build-system r-build-system) (inputs (list jq)) @@ -4602,14 +4673,14 @@ conditionals and comparisons, and more.") (define-public r-sass (package (name "r-sass") - (version "0.4.7") + (version "0.4.8") (source (origin (method url-fetch) (uri (cran-uri "sass" version)) (sha256 (base32 - "1vp9qnhkvz4shhvwrwbwcy1xnrgry0rmqxsg96ggv90m6sv0hyki")))) + "0364ndnmlqrga3k4c1hfy1894k5wpm9srf9201g9zb92rlq2kfj2")))) (properties `((upstream-name . "sass"))) (build-system r-build-system) (propagated-inputs @@ -4664,21 +4735,18 @@ expression estimates for all genes.") (define-public r-bslib (package (name "r-bslib") - (version "0.5.1") + (version "0.6.1") (source (origin (method url-fetch) (uri (cran-uri "bslib" version)) (sha256 (base32 - "03phbr6zax3898yvdfqmrs0sjiik4pfn34ksysf95fp348in2xdi")) + "1nrix6i5ailhhlnnv9b2rymvy0c0w3szg9f5r0d5z2fksypka9v4")) (snippet '(for-each delete-file - '("inst/components/dist/accordion/accordion.min.js" - "inst/components/dist/bslibShiny/bslibShiny.min.js" - "inst/components/dist/card/card.min.js" - "inst/components/dist/sidebar/sidebar.min.js" - "inst/components/dist/webComponents/webComponents.min.js" + '("inst/components/dist/components.min.js" + "inst/components/dist/web-components.min.js" "inst/lib/bs-a11y-p/plugins/js/bootstrap-accessibility.min.js" "inst/lib/bs3/assets/javascripts/bootstrap.min.js" "inst/lib/bs4/dist/js/bootstrap.bundle.min.js" @@ -4687,66 +4755,39 @@ expression estimates for all genes.") (build-system r-build-system) (arguments (list - #:modules '((guix build utils) - (guix build r-build-system) - (srfi srfi-1)) + #:modules '((guix build r-build-system) + (guix build minify-build-system) + (guix build utils) + (ice-9 match)) + #:imported-modules `(,@%r-build-system-modules + (guix build minify-build-system)) #:phases - #~(modify-phases %standard-phases + #~(modify-phases (@ (guix build r-build-system) %standard-phases) (add-after 'unpack 'process-javascript (lambda* (#:key inputs #:allow-other-keys) - ;; See srcts/build/index.ts - (for-each (lambda (component) - (invoke "esbuild" - "--bundle" "--minify" "--sourcemap" - "--target=es6" ;"--external=:bootstrap" - (string-append - #$(this-package-native-input "typescript-components") - "/srcts/src/components/" component ".ts") - (string-append "--outfile=inst/components/dist/" - component "/" component ".min.js"))) - '("accordion" "bslibShiny" "card" "sidebar")) - ;; XXX: webComponents requires "lit" for type annotations, which - ;; we cannot easily build. (with-directory-excursion "inst/" - (call-with-values - (lambda () - (unzip2 - `(("components/dist/webComponents/webComponents.js" - "components/dist/webComponents/webComponents.min.js")))) - (lambda (sources targets) - (for-each (lambda (source target) - (format #t "Processing ~a --> ~a~%" - source target) - (invoke "esbuild" source "--minify" - (string-append "--outfile=" target))) - sources targets)))) - (with-directory-excursion "inst/lib/" - (call-with-values - (lambda () - (unzip2 - `(("bs-a11y-p/plugins/js/bootstrap-accessibility.js" - "bs-a11y-p/plugins/js/bootstrap-accessibility.min.js") - ("bs-colorpicker/js/bootstrap-colorpicker.js" - "bs-colorpicker/js/bootstrap-colorpicker.min.js") - ("bs3/assets/javascripts/bootstrap.js" - "bs3/assets/javascripts/bootstrap.min.js") - (,(assoc-ref inputs "js-bootstrap4-bundle") - "bs4/dist/js/bootstrap.bundle.min.js") - (,(assoc-ref inputs "js-bootstrap5-bundle") - "bs5/dist/js/bootstrap.bundle.min.js")))) - (lambda (sources targets) - (for-each (lambda (source target) - (format #t "Processing ~a --> ~a~%" - source target) - (invoke "esbuild" source "--minify" - (string-append "--outfile=" target))) - sources targets))))))))) + (for-each (match-lambda + ((source . target) + (minify source #:target target))) + `(("components/dist/components.js" + . "components/dist/components.min.js") + ("components/dist/web-components.js" + . "components/dist/web-components.min.js") + ("lib/bs-a11y-p/plugins/js/bootstrap-accessibility.js" + . "lib/bs-a11y-p/plugins/js/bootstrap-accessibility.min.js") + ("lib/bs3/assets/javascripts/bootstrap.js" + . "lib/bs3/assets/javascripts/bootstrap.min.js") + (,(assoc-ref inputs "js-bootstrap4-bundle") + . "lib/bs4/dist/js/bootstrap.bundle.min.js") + (,(assoc-ref inputs "js-bootstrap5-bundle") + . "lib/bs5/dist/js/bootstrap.bundle.min.js"))))))))) (propagated-inputs (list r-base64enc r-cachem r-htmltools r-jquerylib r-jsonlite + r-lifecycle r-memoise r-mime r-rlang @@ -4763,20 +4804,10 @@ expression estimates for all genes.") ("js-bootstrap5-bundle" ,(origin (method url-fetch) - (uri "https://raw.githubusercontent.com/twbs/bootstrap/v5.2.2/dist/js/bootstrap.bundle.js") + (uri "https://raw.githubusercontent.com/twbs/bootstrap/v5.3.1/dist/js/bootstrap.bundle.js") (sha256 (base32 - "1ibfb1lwwm50did0b4fvxaqc7xyljmp20f3qb1ybdlvcy22mk8bg")))) - ("typescript-components" - ,(origin - (method git-fetch) - (uri (git-reference - (url "https://github.com/rstudio/bslib") - (commit (string-append "v" version)))) - (file-name (git-file-name name version)) - (sha256 - (base32 - "0rvwdn1xg7vwphq0bpa7s81f2d2xyhmy5kb516b0lxvc7qfdypa4")))))) + "1bp0a2fin80hwxvd260r1jk57snsgz74vahid64yb2sgj0rlmj8a")))))) (home-page "https://rstudio.github.io/bslib/") (synopsis "Custom Bootstrap Sass themes for shiny and rmarkdown") (description @@ -5456,17 +5487,50 @@ punctuation.") (define-public r-crosstalk (package (name "r-crosstalk") - (version "1.2.0") + (version "1.2.1") (source (origin (method url-fetch) (uri (cran-uri "crosstalk" version)) (sha256 (base32 - "180y7mhpj17axpadwhh7s0qvrpdnag7g977vk256l96d6nmvlds2")))) + "1w8lc3hcd1nlw541880vs3agk2i6bilyapnq9lcs3mfn2s2g0338")) + (snippet + '(for-each delete-file + (list "inst/lib/jquery/jquery.min.js" + "inst/lib/ionrangeslider/js/ion.rangeSlider.min.js" + "inst/lib/selectize/js/selectize.min.js" + "inst/www/js/crosstalk.min.js"))))) (build-system r-build-system) + (arguments + (list + #:modules '((guix build r-build-system) + (guix build minify-build-system) + (guix build utils) + (ice-9 match)) + #:imported-modules `(,@%r-build-system-modules + (guix build minify-build-system)) + #:phases + #~(modify-phases (@ (guix build r-build-system) %standard-phases) + (add-after 'unpack 'replace-bundled-minified-JavaScript + (lambda* (#:key inputs #:allow-other-keys) + (with-directory-excursion "inst/" + (copy-file (search-input-file inputs + "/share/javascript/selectize.min.js") + "lib/selectize/js/selectize.min.js") + (for-each (match-lambda + ((source . target) + (minify source #:target target))) + `(("lib/jquery/jquery.js" + . "lib/jquery/jquery.min.js") + ("lib/ionrangeslider/js/ion.rangeSlider.js" + . "lib/ionrangeslider/js/ion.rangeSlider.min.js") + ("www/js/crosstalk.js" + . "www/js/crosstalk.min.js"))))))))) (propagated-inputs (list r-htmltools r-jsonlite r-lazyeval r-r6)) + (native-inputs + (list esbuild js-selectize)) (home-page "https://rstudio.github.io/crosstalk/") (synopsis "Inter-widget interactivity for HTML widgets") (description @@ -5687,14 +5751,14 @@ files and in-memory raw vectors.") (define-public r-ggmap (package (name "r-ggmap") - (version "3.0.2") + (version "4.0.0") (source (origin (method url-fetch) (uri (cran-uri "ggmap" version)) (sha256 (base32 - "1bnwbk2z31xgxmvq2rawqz7dlbmc0nbhr4d4pmgimjnlbyby6pxs")))) + "1x9lqx0mizqiyxzgg8pgkbi8qmbn2a0zsq5r5riknvh6ghskkrhd")))) (build-system r-build-system) (propagated-inputs (list r-bitops @@ -5709,7 +5773,6 @@ files and in-memory raw vectors.") r-plyr r-png r-purrr - r-rgooglemaps r-rlang r-scales r-stringr @@ -5726,14 +5789,14 @@ including functions for geolocation and routing.") (define-public r-haven (package (name "r-haven") - (version "2.5.3") + (version "2.5.4") (source (origin (method url-fetch) (uri (cran-uri "haven" version)) (sha256 (base32 - "1qxp0hp7clmd70383lsbiijq1i5037zv4haja60czw09mnprjncs")) + "0dd83v3bfs7and9ydx35m8zw0md3wgchwpnvj6yllixa6yxk25cy")) (modules '((guix build utils))) (snippet ;; unvendor readstat @@ -6036,13 +6099,13 @@ error stream.") (define-public r-pls (package (name "r-pls") - (version "2.8-2") + (version "2.8-3") (source (origin (method url-fetch) (uri (cran-uri "pls" version)) (sha256 - (base32 "1f7j47vyh26mp08730z21ssvia4df7rc8iiy5v3yclndc4wlqhi4")))) + (base32 "1qvbwr567vxywpfsl7cb15lpwxpd04kf01nzk1v8dm4csf6p5sz6")))) (build-system r-build-system) (home-page "https://mevik.net/work/software/pls.html") (synopsis "Partial Least Squares and Principal Component Regression") @@ -6088,23 +6151,16 @@ processes. Most of its code is based on the @code{psutil} Python package.") (define-public r-pkgbuild (package (name "r-pkgbuild") - (version "1.4.2") + (version "1.4.3") (source (origin (method url-fetch) (uri (cran-uri "pkgbuild" version)) (sha256 - (base32 "1ic2zjcz29jbfwmsqsja4jjalzsz9ayac5zjz6nv482lsx2s4d13")))) + (base32 "0rci20gj2x0bgjy51jp8i4gld6arsigj7lhdkpwvdyhadjsyv0qm")))) (build-system r-build-system) (propagated-inputs - (list r-callr - r-cli - r-crayon - r-desc - r-prettyunits - r-processx - r-r6 - r-rprojroot)) + (list r-callr r-cli r-desc r-processx r-r6)) (home-page "https://github.com/r-pkgs/pkgbuild") (synopsis "Find tools needed to build R packages") (description @@ -6256,13 +6312,13 @@ factorization and divisive clustering for large sparse and dense matrices.") (define-public r-rcppspdlog (package (name "r-rcppspdlog") - (version "0.0.14") + (version "0.0.15") (source (origin (method url-fetch) (uri (cran-uri "RcppSpdlog" version)) (sha256 - (base32 "1n63mz2rr63kz3v7mg6n4cvw2lrw1ffk7xvln1j1005argvzvd4c")))) + (base32 "0s2mmzy36kndshgbp0q89a0jnx3m7jd2gd54kc2qijxpdm628d63")))) (properties `((upstream-name . "RcppSpdlog"))) (build-system r-build-system) (propagated-inputs (list r-rcpp)) @@ -6542,13 +6598,13 @@ graphics packages that comes with the base installation.") (define-public r-ctrdata (package (name "r-ctrdata") - (version "1.15.2") + (version "1.16.0") (source (origin (method url-fetch) (uri (cran-uri "ctrdata" version)) (sha256 (base32 - "0rqsz9wq4w0w2q0vha3dh7rwr3mnhp2gc1xb8hi30qk85zghjzml")))) + "13n5c7znlxkwqlv04vd5ynbkbq8f28dzbr3y66966971xnf7yhsm")))) (properties `((upstream-name . "ctrdata"))) (build-system r-build-system) (propagated-inputs @@ -6560,9 +6616,12 @@ graphics packages that comes with the base installation.") r-jsonlite r-lubridate r-nodbi + r-readr r-stringi r-tibble - r-xml2)) + r-v8 + r-xml2 + r-zip)) (native-inputs (list r-r-rsp)) (home-page "https://cran.r-project.org/package=ctrdata") (synopsis "Retrieve and analyze clinical trials in public registers") @@ -6958,14 +7017,14 @@ parallel - each request in a separate fork.") (define-public r-progress (package (name "r-progress") - (version "1.2.2") + (version "1.2.3") (source (origin (method url-fetch) (uri (cran-uri "progress" version)) (sha256 (base32 - "0dgzb362641aqm8xd88iqa8jmpdm43xs0aba0d5kk6fvapnxi95l")))) + "0xljky4ad2jbbcfrcyh48li461pc5b2wk210n4x5rs2di6dhfaza")))) (build-system r-build-system) (propagated-inputs (list r-crayon r-hms r-prettyunits r-r6)) @@ -6981,28 +7040,28 @@ package also provides a C++ API, that works with or without Rcpp.") (define-public r-ggally (package (name "r-ggally") - (version "2.1.2") + (version "2.2.0") (source (origin (method url-fetch) (uri (cran-uri "GGally" version)) (sha256 (base32 - "1r98zgh2grn8330cf26r1c20gl131zm778szvn5wj6q6pwv2yd9h")))) + "1pc0mcxhj3mz8ac6r1sqfxw1wkamikjal54z7pb1mairsr3hpqnw")))) (properties `((upstream-name . "GGally"))) (build-system r-build-system) (inputs (list openssl)) (propagated-inputs (list r-dplyr - r-forcats r-ggplot2 + r-ggstats r-gtable r-lifecycle + r-magrittr r-plyr r-progress r-rcolorbrewer - r-reshape r-rlang r-scales r-tidyr)) @@ -7040,13 +7099,13 @@ most popular ones.") (define-public r-sp (package (name "r-sp") - (version "2.1-1") + (version "2.1-2") (source (origin (method url-fetch) (uri (cran-uri "sp" version)) (sha256 - (base32 "0ns0n4929db2g8wjmg8nscq286df4hxrv7gr4mj8giymm3icsd1d")))) + (base32 "1i8d7sbccnhiw7pkmg89v98abjad45psyxccz1acbq4z5ykb9nxz")))) (build-system r-build-system) (propagated-inputs (list r-lattice)) @@ -7065,13 +7124,13 @@ print, summary, etc.") (define-public r-lambertw (package (name "r-lambertw") - (version "0.6.9") + (version "0.6.9-1") (source (origin (method url-fetch) (uri (cran-uri "LambertW" version)) (sha256 (base32 - "0260sa4w5i4vwxg13g3q0dmairsrbyaijr2gxlppy09nxriccwbr")))) + "19j6vjhywyzmrf7rsrx5kf0hg8cpk1gn8al24q813jzp0vsv9ljj")))) (properties `((upstream-name . "LambertW"))) (build-system r-build-system) (propagated-inputs (list r-ggplot2 @@ -7101,13 +7160,13 @@ do-it-yourself toolkit allows users to define their own Lambert W x (define-public r-lamw (package (name "r-lamw") - (version "2.2.1") + (version "2.2.3") (source (origin (method url-fetch) (uri (cran-uri "lamW" version)) (sha256 (base32 - "1lz8iv6r07lrc9bghdmq5y8bfmlr1hdk1j02ghvmz3d7s3d9p0hz")))) + "0jq3xq2ll4lpj8f5aqwazqlb978nzyk7hln4iwlzrlkkcqc35qm1")))) (properties `((upstream-name . "lamW"))) (build-system r-build-system) (propagated-inputs (list r-rcpp r-rcppparallel)) @@ -7190,13 +7249,13 @@ provides an interactive R manager and worker environment.") (define-public r-rmumps (package (name "r-rmumps") - (version "5.2.1-25") + (version "5.2.1-26") (source (origin (method url-fetch) (uri (cran-uri "rmumps" version)) (sha256 - (base32 "15yn5i6v3xz90gimvaqgvp805cfpvr439y9wpckyvwn1iwp2745y")))) + (base32 "16ii9yg20xkxhsqszay42s4cr29k74av5d9d1d28kmpw6cjh2r2c")))) (properties `((upstream-name . "rmumps"))) (build-system r-build-system) (inputs (list zlib)) @@ -7527,14 +7586,14 @@ matrices, a special case of sparse matrices.") (define-public r-bbmle (package (name "r-bbmle") - (version "1.0.25") + (version "1.0.25.1") (source (origin (method url-fetch) (uri (cran-uri "bbmle" version)) (sha256 (base32 - "0mdj21q7k0fp4cj7la14vmcjmp49zqm57g7r6zrwmxpv0acwda46")))) + "02xnfmjr5ax5pc69jkxmygkwvb68flrf1x8pxfw0hk7y37w0qanr")))) (build-system r-build-system) (propagated-inputs (list r-bdsmatrix @@ -7580,14 +7639,14 @@ topics for ecologists (ISBN 978-0-691-12522-0).") (define-public r-lpsolve (package (name "r-lpsolve") - (version "5.6.19") + (version "5.6.20") (source (origin (method url-fetch) (uri (cran-uri "lpSolve" version)) (sha256 (base32 - "06sqjj69gp2ja2hgzfxii00js6pjbmhyp07a9jya5sy6cjgb9ma9")))) + "1nr1vjz6ma42kxbcay4g9j30r9srkbw79f06sdnc68sid2h0dziz")))) (properties `((upstream-name . "lpSolve"))) (build-system r-build-system) (home-page "https://cran.r-project.org/web/packages/lpSolve") @@ -8161,14 +8220,14 @@ with particular emphasis on making attractive log axis plots.") (define-public r-rmysql (package (name "r-rmysql") - (version "0.10.26") + (version "0.10.27") (source (origin (method url-fetch) (uri (cran-uri "RMySQL" version)) (sha256 (base32 - "0yk3xyj6fwyms4ii80m304xn0zbhayfmrhd1b0x7s7wblch5pfs5")))) + "1axz0pqvpqs028p2j7awmgdwpignl7m3hqd1fv3vkgfrkil5nwzi")))) (properties `((upstream-name . "RMySQL"))) (build-system r-build-system) (inputs @@ -8780,13 +8839,13 @@ matrices.") (define-public r-stringdist (package (name "r-stringdist") - (version "0.9.10") + (version "0.9.12") (source (origin (method url-fetch) (uri (cran-uri "stringdist" version)) (sha256 - (base32 "1s3cy2q6l4ppgslwfbfydi5f3kzshfhzkb25gz546n7jgw5jxm3g")))) + (base32 "1i365vwjx8kk47wzry8d3zhzrlv51hn76s2ipk9vi121zx939171")))) (build-system r-build-system) (home-page "https://github.com/markvanderloo/stringdist") (synopsis "Approximate string matching and string distance functions") @@ -8898,14 +8957,14 @@ response matrices.") (define-public r-ordinal (package (name "r-ordinal") - (version "2022.11-16") + (version "2023.12-4") (source (origin (method url-fetch) (uri (cran-uri "ordinal" version)) (sha256 (base32 - "14yld28vjmvxbwz6mapfri4vrj3nsf9p73fn2z80j6jkz8fsv22l")))) + "18lzpmf36vvc3krk7jqz7naikhrcdyplj2z9y6xgzlnzhgcjln7m")))) (build-system r-build-system) (propagated-inputs (list r-mass r-matrix r-nlme r-numderiv r-ucminf)) @@ -9386,13 +9445,13 @@ Analysis with R\" by Michael Friendly and David Meyer (2015).") (define-public r-vcfr (package (name "r-vcfr") - (version "1.14.0") + (version "1.15.0") (source (origin (method url-fetch) (uri (cran-uri "vcfR" version)) (sha256 (base32 - "1jq4c8w9lq03q8x448p620wphslbw4zymfxc42ydl1x7wp9dnxl5")))) + "1yj91cphin232m09wrpj8l27vxblyryh658siakz55hxjs5y85yz")))) (build-system r-build-system) (native-inputs (list r-knitr)) @@ -9424,13 +9483,13 @@ VCF data and familiar R software.") (define-public r-rvcg (package (name "r-rvcg") - (version "0.22.1") + (version "0.22.2") (source (origin (method url-fetch) (uri (cran-uri "Rvcg" version)) (sha256 (base32 - "16rr2kqw7lqb7m01pwn496zf2nr25gm6wcncz44kszjzzmv2xanv")))) + "077p4c16nqi6ayxv1i31cr6sw9fwnxpmfkmrrhzh02khpi2c2jg5")))) (properties `((upstream-name . "Rvcg"))) (build-system r-build-system) (propagated-inputs (list r-rcpp r-rcpparmadillo r-rcppeigen)) @@ -9618,14 +9677,14 @@ multivariate function estimation using smoothing splines.") (define-public r-cli (package (name "r-cli") - (version "3.6.1") + (version "3.6.2") (source (origin (method url-fetch) (uri (cran-uri "cli" version)) (sha256 (base32 - "0djyl08k7nhlbzgnfx7gq8w00s7c9f66bd11bvi9lzz6qz70cc5y")))) + "0lg131q9l8wpnggc3jlrjl1ri3dw0d1pi4nr1zlnlaqvf7ilj1sc")))) (build-system r-build-system) (home-page "https://github.com/r-lib/cli#readme") (synopsis "Helpers for developing command line interfaces") @@ -9727,13 +9786,13 @@ constants, and control debugging of packages via environment variables.") (define-public r-processx (package (name "r-processx") - (version "3.8.2") + (version "3.8.3") (source (origin (method url-fetch) (uri (cran-uri "processx" version)) (sha256 - (base32 "1kbyhpzcfiqqx9csn0869zbiza6w97vq1j1y01qlph93bfpqf6z9")))) + (base32 "0cfq6pq8rg0vhjfgvf48hfvngbn1g6hv28b6pgxh55xqh8acbn0s")))) (build-system r-build-system) (propagated-inputs (list r-ps r-r6)) @@ -9893,14 +9952,14 @@ Markdown documents.") (define-public r-seriation (package (name "r-seriation") - (version "1.5.1") + (version "1.5.3") (source (origin (method url-fetch) (uri (cran-uri "seriation" version)) (sha256 (base32 - "0q52lvcxgiqs1x0vyjrahkj8mdxc9s3514064fsqgwns4s03j1aa")))) + "1kz1g4dy076bc72hivv26ygbvnjv3li29xxikv1mwanwap4jc2ds")))) (build-system r-build-system) (propagated-inputs (list r-ca @@ -10014,14 +10073,14 @@ estimated from a given sample.") (define-public r-vctrs (package (name "r-vctrs") - (version "0.6.4") + (version "0.6.5") (source (origin (method url-fetch) (uri (cran-uri "vctrs" version)) (sha256 (base32 - "1j01s27ybzn60p17y7k5n5dzsmjqhgjy634sv0dx4977aqiik04a")))) + "00p4r1z4xc05m25y0qa7svr67lbypcfqyp2b0ja9asgx90i7s5j3")))) (build-system r-build-system) (propagated-inputs (list r-cli r-glue r-lifecycle r-rlang)) @@ -10082,13 +10141,13 @@ terminals.") (define-public r-pinfsc50 (package (name "r-pinfsc50") - (version "1.2.0") + (version "1.3.0") (source (origin (method url-fetch) (uri (cran-uri "pinfsc50" version)) (sha256 (base32 - "1547xyxmfb7zi8h9bsm6k67dcw4hpp129xzvmgwfw7r6p4af47zd")))) + "1gs9x328qqvqwx3k4z9jgzq5zb6g8kdz4430n96v7zb78p7jf5lp")))) (build-system r-build-system) (home-page "https://cran.r-project.org/web/packages/pinfsc50/") (synopsis "Genomic data for the plant pathogen Phytophthora infestans") @@ -10142,14 +10201,14 @@ their own grammars and easily expose them in R packages.") (define-public r-tinytex (package (name "r-tinytex") - (version "0.48") + (version "0.49") (source (origin (method url-fetch) (uri (cran-uri "tinytex" version)) (sha256 (base32 - "15bnb4fxdzapgj9ws3rfbcxwdzwbq8h5yy4d1db0m9c1lygrh2qx")))) + "0i9icscy5n6p6w3f4v2z3cznywrrv2l6xyyhb0k1fpa4cpn6j4cl")))) (build-system r-build-system) (propagated-inputs (list r-xfun)) @@ -10227,13 +10286,13 @@ implementation of an approximate nearest neighbor search using hierarchical (define-public r-nestedcv (package (name "r-nestedcv") - (version "0.7.0") + (version "0.7.3") (source (origin (method url-fetch) (uri (cran-uri "nestedcv" version)) (sha256 - (base32 "0jpg4il1niyizfq8kkk391x7anhp2s38mrfypa86skr08ca46zss")))) + (base32 "1f725r2f00ldp6pdk3ncvwxm4c2asz6rjs6g8afwh6plxwfkcjq8")))) (properties `((upstream-name . "nestedcv"))) (build-system r-build-system) (propagated-inputs (list r-caret @@ -10242,6 +10301,7 @@ implementation of an approximate nearest neighbor search using hierarchical r-foreach r-ggplot2 r-glmnet + r-magrittr r-matrixstats r-matrixtests r-proc @@ -10264,14 +10324,14 @@ of prediction methods available in @code{caret}.") (define-public r-network (package (name "r-network") - (version "1.18.1") + (version "1.18.2") (source (origin (method url-fetch) (uri (cran-uri "network" version)) (sha256 (base32 - "0hyj7h0z6mvf0jq0fb5z9nny4c71pwqjl7w0z864in3754sp03f8")))) + "0yx20v3izm7037cx5swc19966z97w7q9xw4p2p6skfyap4nqjcxz")))) (build-system r-build-system) (propagated-inputs (list r-magrittr r-statnet-common r-tibble)) @@ -10398,14 +10458,14 @@ detect possible inconsistencies.") (define-public r-sna (package (name "r-sna") - (version "2.7-1") + (version "2.7-2") (source (origin (method url-fetch) (uri (cran-uri "sna" version)) (sha256 (base32 - "1qqaazcc8x925bwa9yllwyv98ddpdqgdq026h0ss6vsvq4bz5nk0")))) + "1kd7qxdc8wy8d385yddj6rs0xc6lkn8hpra3wy4r7svzjqk4c8bv")))) (build-system r-build-system) (propagated-inputs (list r-network r-statnet-common)) @@ -10448,14 +10508,14 @@ of these tests are also included.") (define-public r-ttr (package (name "r-ttr") - (version "0.24.3") + (version "0.24.4") (source (origin (method url-fetch) (uri (cran-uri "TTR" version)) (sha256 (base32 - "11xsmbvmxq2j119j2z58bx1fkkb2xlhmzc35z5fbwr3nchrfz6jd")))) + "1102f4i776asqb281mq20ymhzhcp12gn9nr3rm0jzblv6nf2nww9")))) (properties `((upstream-name . "TTR"))) (build-system r-build-system) (propagated-inputs @@ -10680,14 +10740,14 @@ exhaustive search.") (define-public r-splus2r (package (name "r-splus2r") - (version "1.3-3") + (version "1.3-4") (source (origin (method url-fetch) (uri (cran-uri "splus2R" version)) (sha256 (base32 - "035zd22zcpkh74rik9ws6g8al6vjz7jgrqs5si361bzb5n290p3x")))) + "16r13bbijq7lz3c8qn7dnb4h8fc3vbcahyah2zij888p470vqljn")))) (properties `((upstream-name . "splus2R"))) (build-system r-build-system) (home-page "https://cran.r-project.org/web/packages/splus2R/") @@ -10802,14 +10862,14 @@ financial trading strategies.") (define-public r-tseries (package (name "r-tseries") - (version "0.10-54") + (version "0.10-55") (source (origin (method url-fetch) (uri (cran-uri "tseries" version)) (sha256 (base32 - "0a6hnkx1wpw29q5rqq7hi2fal720dx5f62rvc6gxs8lanmik5jn3")))) + "03jb2ij4jyhrbygi0gha549vq262kx1ffjmy12rf0gak0qmq5iwp")))) (build-system r-build-system) (propagated-inputs (list r-jsonlite r-quadprog r-quantmod r-zoo)) @@ -10870,14 +10930,14 @@ Cryer and Kung-Sik Chan.") (define-public r-extradistr (package (name "r-extradistr") - (version "1.9.1") + (version "1.10.0") (source (origin (method url-fetch) (uri (cran-uri "extraDistr" version)) (sha256 (base32 - "1gypnbvdzczl0mvznvy8r7hzsvc5gvdvi2mmzj21cqdw9n63944r")))) + "1ad3xp4axbbid9i9vd4q8iccs3g3917yic2mas37mfwm5in4l9pl")))) (properties `((upstream-name . "extraDistr"))) (build-system r-build-system) (propagated-inputs @@ -11051,14 +11111,14 @@ sample Robust Rank-Order Distributional Test.") (define-public r-expm (package (name "r-expm") - (version "0.999-7") + (version "0.999-8") (source (origin (method url-fetch) (uri (cran-uri "expm" version)) (sha256 (base32 - "1wd03dcqxyi7kyznfq7107ix1bsp7rwzqqv6w7p37pdq2jwlkwi8")))) + "0lh5f3pln7v9yi88rjvkq3ii32lngp0l4k8xn9hc74kks6gjmqkr")))) (build-system r-build-system) (propagated-inputs (list r-matrix)) (native-inputs (list gfortran)) @@ -11139,14 +11199,14 @@ simple and familiar tools.") (define-public r-phontools (package (name "r-phontools") - (version "0.2-2.1") + (version "0.2-2.2") (source (origin (method url-fetch) (uri (cran-uri "phonTools" version)) (sha256 (base32 - "01i481mhswsys3gpasw9gn6nxkfmi7bz46g5c84m13pg0cv8hxc7")))) + "0r5ylbxvzpa23yys4rxdlglfc5jq997ziw6yf8v9jyavy4p1ppkx")))) (properties `((upstream-name . "phonTools"))) (build-system r-build-system) (home-page "http://www.santiagobarreda.com/rscripts.html") @@ -11508,13 +11568,13 @@ systems.") (define-public r-baseline (package (name "r-baseline") - (version "1.3-4") + (version "1.3-5") (source (origin (method url-fetch) (uri (cran-uri "baseline" version)) (sha256 (base32 - "1kl68zvyi2zd73jy3axrvrymwn4y6l4pd62nz0fciwbgkjhz3yyx")))) + "0l0llb3pi89ixkpvfg5vbvwwv3gzldf0g98rrd3vkm7q26rqmmd2")))) (properties `((upstream-name . "baseline"))) (build-system r-build-system) (propagated-inputs @@ -11673,14 +11733,14 @@ plots) for multivariate and time series-like data.") (define-public r-signal (package (name "r-signal") - (version "0.7-7") + (version "1.8-0") (source (origin (method url-fetch) (uri (cran-uri "signal" version)) (sha256 (base32 - "0qaf39vfmhn3d0bdjqd805ayfkaj48dkmf5dqd47bpk7dp21b837")))) + "1126p631zm0wc4h9ghqai5yb9vklpz676fygb0d0aavs2raaijw9")))) (build-system r-build-system) (propagated-inputs (list r-mass)) (native-inputs (list gfortran)) @@ -12080,14 +12140,14 @@ used.") (define-public r-arules (package (name "r-arules") - (version "1.7-6") + (version "1.7-7") (source (origin (method url-fetch) (uri (cran-uri "arules" version)) (sha256 (base32 - "0syrbh85vzhp9plm95dhq6pfanzbxqm4wcahw3y2d26gvi2nmzwm")))) + "183isw4sy5gv5fxajiy4pm5p3nfd1pffa4h8sisl2nrw2rig9na2")))) (build-system r-build-system) (propagated-inputs (list r-generics r-matrix)) @@ -12354,14 +12414,14 @@ and classification and regression trees.") (define-public r-later (package (name "r-later") - (version "1.3.1") + (version "1.3.2") (source (origin (method url-fetch) (uri (cran-uri "later" version)) (sha256 (base32 - "1b342khxyvm3qnag36p6yr5nlrqbxqabm9f6qfxwxsmry20xdvi3")))) + "07jn5gp4237va5pcq8lvqzyblgij7k2wj9k5wl93q3fd6cyhgxaj")))) (build-system r-build-system) (propagated-inputs (list r-rcpp r-rlang)) @@ -12450,13 +12510,13 @@ methods.") (define-public r-fstcore (package (name "r-fstcore") - (version "0.9.14") + (version "0.9.18") (source (origin (method url-fetch) (uri (cran-uri "fstcore" version)) (sha256 - (base32 "0mhk4l86iypg86l0jjs7szxllcy10h4rh5qy2gsmpmiv003gm3nh")))) + (base32 "00wzpr2i7s9pc3alvn4b8f1wgmfqplpwdif9rh9x8qqnylbixiqq")))) (properties `((upstream-name . "fstcore"))) (build-system r-build-system) (propagated-inputs (list r-rcpp)) @@ -12522,12 +12582,12 @@ clustering, and classification.") (define-public r-snowfall (package (name "r-snowfall") - (version "1.84-6.2") + (version "1.84-6.3") (source (origin (method url-fetch) (uri (cran-uri "snowfall" version)) (sha256 - (base32 "0frmasv04wd47h04zbwaryhiyxllarf3ggpa39p5qicjp6r7lilv")))) + (base32 "0hxip3rzv7slxvif1000avbcid2mjxj1y9mimyvk87h404mr6h96")))) (build-system r-build-system) (propagated-inputs (list r-snow)) @@ -13378,14 +13438,14 @@ statistic, and one based on variance estimators.") (define-public r-fansi (package (name "r-fansi") - (version "1.0.5") + (version "1.0.6") (source (origin (method url-fetch) (uri (cran-uri "fansi" version)) (sha256 (base32 - "1xi35schbz42kjwjzhjqj12nd053962mgnk6qd9k5m5zgwsww5n6")))) + "0qqq8gz6sfr5yib4qmvk458qa0ypaz0n7f2ygjnpy2p5vy8cd7ga")))) (build-system r-build-system) (native-inputs (list r-knitr)) ; for vignettes @@ -13572,14 +13632,14 @@ functions.") (define-public r-rjags (package (name "r-rjags") - (version "4-14") + (version "4-15") (source (origin (method url-fetch) (uri (cran-uri "rjags" version)) (sha256 (base32 - "1jz26x49zsjl95whlkjsr8h98j68ajv2gc7qqnxy732r0bvmsfri")))) + "188qxyanny4yb1cq8hrz0y7pjafgvj0vhly0gaw271dam8glrk9m")))) (build-system r-build-system) (propagated-inputs (list r-coda)) @@ -13796,14 +13856,14 @@ and tests them.") (define-public r-overlap (package (name "r-overlap") - (version "0.3.4") + (version "0.3.4.1") (source (origin (method url-fetch) (uri (cran-uri "overlap" version)) (sha256 (base32 - "1arxprhz035ab78ks88n6scwnlwmnb97mlac5gsx90ipb6gkgcyk")))) + "0gr0qaay97js3qs11lpci2d3smwl0jda2gc8fqvbw6lb5fznf4r1")))) (build-system r-build-system) (home-page "https://cran.r-project.org/web/packages/overlap/") (synopsis "Estimates of coefficient of overlapping for animal activity patterns") @@ -13883,14 +13943,14 @@ Decomposition in R (Beaton et al 2014) <doi:10.1016/j.csda.2013.11.006>.") (define-public r-insight (package (name "r-insight") - (version "0.19.6") + (version "0.19.7") (source (origin (method url-fetch) (uri (cran-uri "insight" version)) (sha256 (base32 - "1gnxhszwccmvjarq47p7s09jrkhvd8zkz632ysxz6dgxfpqn9zqh")))) + "01hzwz05zz8kxf8hgmz6i4npxwv12723bkv9jk3hhhghlc9lr9a1")))) (build-system r-build-system) (native-inputs (list r-knitr)) @@ -14673,14 +14733,14 @@ from the @code{stats} package (plus some extra parameters).") (define-public r-cmplot (package (name "r-cmplot") - (version "4.4.3") + (version "4.5.0") (source (origin (method url-fetch) (uri (cran-uri "CMplot" version)) (sha256 (base32 - "0mkjpmwpd0izczp8jgfcfxw9i4qv82aj1xyhzsxgdxnjdd7ark66")))) + "1gg3pq55shh9khw5bsrdhk0yqgyr9xhdzqhaqksihka64wsqmhd3")))) (properties `((upstream-name . "CMplot"))) (build-system r-build-system) (home-page "https://github.com/YinLiLin/CMplot") @@ -14784,13 +14844,13 @@ supported classes are those defined in packages @code{network} and (define-public r-interp (package (name "r-interp") - (version "1.1-4") + (version "1.1-5") (source (origin (method url-fetch) (uri (cran-uri "interp" version)) (sha256 (base32 - "01jdwcv25khnma7i0zcynkr5sw0dzb2agqimhrpdg91jh4w5sysg")))) + "082b1sx7m62csqig582syki8ny9vwxk311rh8hp1cmh1l5qhjlhc")))) (properties `((upstream-name . "interp"))) (build-system r-build-system) (propagated-inputs (list r-deldir r-rcpp r-rcppeigen)) @@ -14977,14 +15037,14 @@ repeated measures data, respectively.") (define-public r-gam (package (name "r-gam") - (version "1.22-2") + (version "1.22-3") (source (origin (method url-fetch) (uri (cran-uri "gam" version)) (sha256 (base32 - "1yh2rahcbi2fbsi1yps1l51xxljc7lcs7h729y5vjj4l492pywzy")))) + "153ig136i3dpy87f8v9f5055x94sl74fnrf5ivpa9fc67f76ikb6")))) (properties `((upstream-name . "gam"))) (build-system r-build-system) (propagated-inputs @@ -15697,13 +15757,13 @@ emission distributions.") (define-public r-nleqslv (package (name "r-nleqslv") - (version "3.3.4") + (version "3.3.5") (source (origin (method url-fetch) (uri (cran-uri "nleqslv" version)) (sha256 - (base32 "1kqgjgrid0s4f5rr7kcmw2h1zkb5vfvl2nnzrvc5s5fdbd9fg0r7")))) + (base32 "0fjby0qva2lp2i7x752wva0z15xqys9fgrrcfimqszg65wnig60j")))) (build-system r-build-system) (native-inputs (list gfortran)) (home-page "https://cran.r-project.org/web/packages/nleqslv/") @@ -15949,14 +16009,14 @@ analysis.") (define-public r-gee (package (name "r-gee") - (version "4.13-25") + (version "4.13-26") (source (origin (method url-fetch) (uri (cran-uri "gee" version)) (sha256 (base32 - "128f810h88jxz1wdcmqjj3drb69b0rwx38l682i97rzb5wg8hh71")))) + "1323qv2hiinixmwcb8rfvf5qmkffnnq9f1g8kj9amwsimfsm71cs")))) (properties `((upstream-name . "gee"))) (build-system r-build-system) (native-inputs @@ -15997,13 +16057,13 @@ handle data from simple random samples as well as complex surveys.") (define-public r-tarchetypes (package (name "r-tarchetypes") - (version "0.7.9") + (version "0.7.10") (source (origin (method url-fetch) (uri (cran-uri "tarchetypes" version)) (sha256 (base32 - "1889jca7zwav1wwig1a4jr1dxmbcszfriqmhdyg97m2s1c9j0r9p")))) + "14k9p98yv5vgpi1bxngqzmaibdx9h7wyn8k1hw5imvlg4cbwm675")))) (properties `((upstream-name . "tarchetypes"))) (build-system r-build-system) (propagated-inputs (list r-digest @@ -16207,13 +16267,13 @@ estimation problem.") (define-public r-quickjsr (package (name "r-quickjsr") - (version "1.0.7") + (version "1.0.8") (source (origin (method url-fetch) (uri (cran-uri "QuickJSR" version)) (sha256 (base32 - "14wq7qymzrdbg3mhm4gk3vx1dr4yx8di8i2b10as4knnzr1w4q9i")))) + "10cyi8wja24j68wqmsphsr19h977hr6ffsxf339bfrvwdnigm5vn")))) (properties `((upstream-name . "QuickJSR"))) (build-system r-build-system) (propagated-inputs (list r-jsonlite r-r6 r-rcpp)) @@ -16292,13 +16352,13 @@ series.") (define-public r-acceptancesampling (package (name "r-acceptancesampling") - (version "1.0-8") + (version "1.0-10") (source (origin (method url-fetch) (uri (cran-uri "AcceptanceSampling" version)) (sha256 - (base32 "1ja1g0v8qvf7yj81x37wc6i7fkwpc573756jgvazazi8yf1gm12p")))) + (base32 "1sbv2yrvnn0zgdmqvjlmz2vllsg6r9nlmxdgadhymhm9s51gfx65")))) (properties `((upstream-name . "AcceptanceSampling"))) (build-system r-build-system) @@ -16611,14 +16671,14 @@ Bayesian modeling.") (define-public r-tmb (package (name "r-tmb") - (version "1.9.6") + (version "1.9.9") (source (origin (method url-fetch) (uri (cran-uri "TMB" version)) (sha256 (base32 - "1sh3arsj42gimgpva76p4dd969iwqw3n5wkzn487kl7vk5phdnh0")))) + "0k37xspfk9vqin63ggkm8qlki498h3k3kqg8wa9kff3y1mi8lf84")))) (properties `((upstream-name . "TMB"))) (build-system r-build-system) (propagated-inputs @@ -17071,14 +17131,14 @@ user credentials.") (define-public r-gert (package (name "r-gert") - (version "2.0.0") + (version "2.0.1") (source (origin (method url-fetch) (uri (cran-uri "gert" version)) (sha256 (base32 - "14b3bppid65jpzxrc7ddvvyr2qafv08z75v19rvfiv7780vpq53w")))) + "14nh7j0xz1s4ngsd5n3hixr534z843a38y57grwqkkh9g21q9mqf")))) (properties `((upstream-name . "gert"))) (build-system r-build-system) (inputs @@ -17374,13 +17434,13 @@ exact and interval-censored observations.") (define-public r-clustercrit (package (name "r-clustercrit") - (version "1.2.8") + (version "1.3.0") (source (origin (method url-fetch) (uri (cran-uri "clusterCrit" version)) (sha256 (base32 - "10pz1bikdbkm2ky3xnagp0qv60whalavp6j39b4p7d75jj5xcxgk")))) + "0raxlyvr3kr8c8bzjgs7hb9n76m314vzvfiz7c74v6cqpkmh6dkx")))) (properties `((upstream-name . "clusterCrit"))) (build-system r-build-system) (native-inputs (list gfortran)) @@ -17708,13 +17768,13 @@ address a bug.") (define-public r-rcppalgos (package (name "r-rcppalgos") - (version "2.8.2") + (version "2.8.3") (source (origin (method url-fetch) (uri (cran-uri "RcppAlgos" version)) (sha256 (base32 - "1h9kgr8776q7dvc0a2cylixhvk0xw3fq6lpyf15xajbbypxy9bzz")))) + "0ppix426yg8rnh07z2clv634ynvvwmjlsjnsxh3srss6xa8yfrb0")))) (properties `((upstream-name . "RcppAlgos"))) (build-system r-build-system) (inputs (list gmp)) @@ -17821,14 +17881,14 @@ other values.") (define-public r-ncdf4 (package (name "r-ncdf4") - (version "1.21") + (version "1.22") (source (origin (method url-fetch) (uri (cran-uri "ncdf4" version)) (sha256 (base32 - "03dk47xz6qlpky9kkpkkxc472czq542yml3fdg39bic2yggffnig")))) + "040jpcgsb98s6knch0z3f3f5fpmlwks1grpvb9k8s02c9w0a5adr")))) (build-system r-build-system) (inputs (list netcdf zlib)) @@ -17871,14 +17931,14 @@ Bioconductor packages.") (define-public r-rgl (package (name "r-rgl") - (version "1.2.1") + (version "1.2.8") (source (origin (method url-fetch) (uri (cran-uri "rgl" version)) (sha256 (base32 - "16ybdly3cjm6ibvhfad7d5k6bxaxf33l5s1s766hy9kza8skyani")) + "1x0p2yldg2mjf64xd5dd0bidzgy7b39w7zn18ghan2rdf0wffdg5")) (snippet '(delete-file "inst/htmlwidgets/lib/CanvasMatrix/CanvasMatrix.min.js")))) ;; For OpenGL and X11 support @@ -17932,14 +17992,14 @@ image formats, including PNG, Postscript, SVG, PGF.") (define-public r-multicool (package (name "r-multicool") - (version "0.1-12") + (version "1.0.0") (source (origin (method url-fetch) (uri (cran-uri "multicool" version)) (sha256 (base32 - "0djacq0irfqz4nlnx238kja73yvr1n5qybbfyl6bw1n6qgcjhza8")))) + "0gcic5w3z5yibq75j7jzjv3lmy04rfmxswmw60vxba4xsnbqxc2g")))) (build-system r-build-system) (propagated-inputs (list r-rcpp)) (home-page "https://cran.r-project.org/web/packages/multicool/") @@ -18321,13 +18381,13 @@ Tabelow (2007) <DOI:10.18637/jss.v019.i01>.") (define-public r-admisc (package (name "r-admisc") - (version "0.33") + (version "0.34") (source (origin (method url-fetch) (uri (cran-uri "admisc" version)) (sha256 - (base32 "1anvh581jh1mw3yhpbm2dyihs9npi9gd0isgkphw5gr64fivw49r")))) + (base32 "1psvi8hb7j65abw8g4ya9r43r5kd9mcv478pg2d09za0cig8gkzx")))) (properties `((upstream-name . "admisc"))) (build-system r-build-system) (home-page "https://github.com/dusadrian/admisc") @@ -18387,14 +18447,14 @@ classification.") (define-public r-sodium (package (name "r-sodium") - (version "1.3.0") + (version "1.3.1") (source (origin (method url-fetch) (uri (cran-uri "sodium" version)) (sha256 (base32 - "0b10cbzpybbjwhrbdx2ldjg8gb3cgzra533x6rn3d52zy1sqs6l8")))) + "0cbj7mgchi42ri6h1fc24asj7lkcn9n3l0zbabrx89s9zi4im0gx")))) (properties `((upstream-name . "sodium"))) (build-system r-build-system) (inputs @@ -18496,14 +18556,14 @@ redundant complex conjugate when the input is real data.") (define-public r-tiff (package (name "r-tiff") - (version "0.1-11") + (version "0.1-12") (source (origin (method url-fetch) (uri (cran-uri "tiff" version)) (sha256 (base32 - "0xgc7vyndxxahfhc2qqzmwi56bnfyl0pn72l820jz5sd24aymhxq")))) + "0p41irri0nxg9mm06g8jp5zqssv80g5zg0iifrr7ancjkxqww46z")))) (build-system r-build-system) (inputs (list libtiff libjpeg-turbo zlib)) @@ -19275,14 +19335,14 @@ and compatibility with @code{ape} objects.") (define-public r-rnifti (package (name "r-rnifti") - (version "1.5.0") + (version "1.5.1") (source (origin (method url-fetch) (uri (cran-uri "RNifti" version)) (sha256 (base32 - "01g9ylmjirmblgcl1f8kzwfzbpyf4vy2rci1407jx4s3av9xzr1j")))) + "0rbym1svldahd4rlbcfb5s62rigws2w1fa1f1chp504gn340b555")))) (properties `((upstream-name . "RNifti"))) (build-system r-build-system) (inputs (list zlib)) @@ -19318,13 +19378,13 @@ creating color scales and calculating color distances.") (define-public r-ore (package (name "r-ore") - (version "1.7.3.1") + (version "1.7.4.1") (source (origin (method url-fetch) (uri (cran-uri "ore" version)) (sha256 - (base32 "0hlmr4p0ldizdv46myyhlki10qkjdgs44jxp9y61zqcdw360dz95")))) + (base32 "01ayvjyjbarmi7l2jwp7bp4m0k42zy8bvf9rbwynfwmm8mv6vx0j")))) (build-system r-build-system) (home-page "https://github.com/jonclayden/ore") (synopsis "R interface to the Onigmo regular expression library") @@ -19810,14 +19870,14 @@ preparing, executing, and processing HTTP requests.") (define-public r-gmp (package (name "r-gmp") - (version "0.7-2") + (version "0.7-3") (source (origin (method url-fetch) (uri (cran-uri "gmp" version)) (sha256 (base32 - "12rd0j3sawzipfz4xr3ikrxrjabpjp4s3y4ikvk16z8rhjs2i5bw")))) + "0rf6da41y54znslwkxagdfzmwji7zh131s55rwfxc6pqpdzhyvb0")))) (properties '((updater-extra-inputs . ("gmp")))) (build-system r-build-system) @@ -19834,14 +19894,14 @@ limitations\" using the GNU Multiple Precision library.") (define-public r-rmpfr (package (name "r-rmpfr") - (version "0.9-3") + (version "0.9-4") (source (origin (method url-fetch) (uri (cran-uri "Rmpfr" version)) (sha256 (base32 - "0hgn1ib581s0q5slscakhy858yrqlx8w5gnrn2zgga98iv4vv3c2")))) + "1fx8l42bbipzlaaljp7iwdkgbmb0rcw07vh4py8fycb3dvs9iiyf")))) (properties `((upstream-name . "Rmpfr"))) (build-system r-build-system) (inputs @@ -20290,14 +20350,14 @@ to throw errors if they aren't in the right form.") (define-public r-dotcall64 (package (name "r-dotcall64") - (version "1.1-0") + (version "1.1-1") (source (origin (method url-fetch) (uri (cran-uri "dotCall64" version)) (sha256 (base32 - "1ibh2f2vcv30k1c919diw6qdmhxmvkl83k3396vy3xigbcny711l")))) + "06y9y9m5prjvqlprqpanbamgr6jkw27wj7nnha5ayyn08zbxgf11")))) (properties `((upstream-name . "dotCall64"))) (build-system r-build-system) (native-inputs (list gfortran)) @@ -20935,14 +20995,14 @@ lasso, adaptive lasso and Ridge regression based on cross-validation.") (define-public r-mcmc (package (name "r-mcmc") - (version "0.9-7") + (version "0.9-8") (source (origin (method url-fetch) (uri (cran-uri "mcmc" version)) (sha256 (base32 - "0q42m8ab7b6bxhns494ksjdss5f3c5m2jjfdlfj6fk1nz7ax7i5p")))) + "19vfh868lr4a491gc2x2b2xs83gldw294zbl4bqsgs2q9c6l81ka")))) (build-system r-build-system) (home-page "https://www.stat.umn.edu/geyer/mcmc/") (synopsis "Markov chain Monte Carlo") @@ -21194,14 +21254,14 @@ using @code{S3}.") (define-public r-capushe (package (name "r-capushe") - (version "1.1.1") + (version "1.1.2") (source (origin (method url-fetch) (uri (cran-uri "capushe" version)) (sha256 (base32 - "1aa76ir1kp67hiz7dr60azyc71yzslshyc640fjh0fpw0sp5kwbc")))) + "1mazsfdiqmhy0ywahqw49qql899ph0l6jllriz2spyp1bs98q9b7")))) (build-system r-build-system) (propagated-inputs (list r-mass)) (home-page "https://cran.r-project.org/web/packages/capushe/index.html") @@ -22395,14 +22455,14 @@ for reproducibility. See the vignette and reference manual for examples.") (define-public r-sets (package (name "r-sets") - (version "1.0-24") + (version "1.0-25") (source (origin (method url-fetch) (uri (cran-uri "sets" version)) (sha256 (base32 - "1jfaxdyr3w5p086yh7n6661dipc4rx6ak92hp6gv13j1r7sk6mz7")))) + "1x14q29jjmrs5ldbjc7pxp5pr52j3dw6zr9k5qvz4ycniwhnk92w")))) (properties `((upstream-name . "sets"))) (build-system r-build-system) (home-page "https://cran.r-project.org/web/packages/sets") @@ -22571,14 +22631,14 @@ barplots or heatmaps.") (define-public r-seqinr (package (name "r-seqinr") - (version "4.2-30") + (version "4.2-36") (source (origin (method url-fetch) (uri (cran-uri "seqinr" version)) (sha256 (base32 - "0jzfbzai2r5bprynq337s1a4k66m34p5k9nzzmbyzvk7719zxy7s")))) + "09dj2k5mi6xylsihnwbmdd8f4qg855gyh7yvz9gamam7j6h646lk")))) (build-system r-build-system) (propagated-inputs (list r-ade4 r-segmented)) @@ -22595,14 +22655,14 @@ utilities for sequence data management under the ACNUC system.") (define-public r-units (package (name "r-units") - (version "0.8-4") + (version "0.8-5") (source (origin (method url-fetch) (uri (cran-uri "units" version)) (sha256 (base32 - "1z672lsyrbm8mjv6ni8pa0cxixf9vi249281ym1ayrv13s4s37a9")))) + "1c836qazrs8z9p1xkcfl9gl882i8q7qf2g73l483w18bfspq0pnr")))) (build-system r-build-system) (inputs (list udunits)) @@ -22720,14 +22780,14 @@ sampling.") (define-public r-deldir (package (name "r-deldir") - (version "1.0-9") + (version "2.0-2") (source (origin (method url-fetch) (uri (cran-uri "deldir" version)) (sha256 (base32 - "11q6cz410q8sv0w81fk1px3vx7xmyda5cbsv3m21xr577bn28yhj")))) + "1qzfq47fs3pr0946m53z6cq93pbpkgwwhqkcdgfahxsq1izpigz9")))) (build-system r-build-system) (native-inputs (list gfortran)) (home-page "https://cran.r-project.org/web/packages/deldir") @@ -22744,14 +22804,14 @@ tessellation.") (define-public r-wk (package (name "r-wk") - (version "0.9.0") + (version "0.9.1") (source (origin (method url-fetch) (uri (cran-uri "wk" version)) (sha256 (base32 - "1nmrgdp3swl34kr51hypm3azf8yhcalg5nngp70l56afsbaskyqh")))) + "0yxzyb09by9winspdn0585xhjmdcablb07wx6pf7ahg0q18sz85p")))) (properties `((upstream-name . "wk"))) (build-system r-build-system) (home-page "https://paleolimbot.github.io/wk/") @@ -22768,14 +22828,14 @@ high-performance functions are provided here.") (define-public r-s2 (package (name "r-s2") - (version "1.1.4") + (version "1.1.5") (source (origin (method url-fetch) (uri (cran-uri "s2" version)) (sha256 (base32 - "0k209rx7w47rqgydy8h7ldngxm0b8d8yidhwbgw2rrddx8jlj2xy")))) + "07k9j3sqlqjmcgws2x7accnd5pbqcn8n2pwbviw00sg74sz3xz1v")))) (properties `((upstream-name . "s2"))) (build-system r-build-system) (arguments @@ -22874,13 +22934,13 @@ or raster data cubes) are handled by package stars'.") (define-public r-spdep (package (name "r-spdep") - (version "1.2-8") + (version "1.3-1") (source (origin (method url-fetch) (uri (cran-uri "spdep" version)) (sha256 (base32 - "144idklvyvnzfdnigzyw6wqhxyrfjw8pm7vdmlk5a0yi235v97wd")) + "15jkx3f4c1255kidsqdq4gyi28r4jk3h46fm7jj114ag176jq1in")) (snippet '(for-each delete-file '("inst/doc/CO69.html" "inst/doc/CO69.R" @@ -23278,14 +23338,14 @@ exact test for Hardy-Weinberg equilibrium.") (define-public r-tdthap (package (name "r-tdthap") - (version "1.2") + (version "1.3") (source (origin (method url-fetch) (uri (cran-uri "tdthap" version)) (sha256 (base32 - "0x67k50vly92b9n5hpqp4hy87kh8r6nzadsj8xzz4lvcmb4vb6mq")))) + "05yj7jwwd0q2yk8gpp44fhh3sknvw3g6p9glj6z6rz46p9xf31kr")))) (build-system r-build-system) (home-page "https://cran.r-project.org/web/packages/tdthap/") (synopsis "TDT tests for extended haplotypes") @@ -23320,13 +23380,13 @@ SELECT or UPDATE queries to an end-point.") (define-public r-bookdown (package (name "r-bookdown") - (version "0.36") + (version "0.37") (source (origin (method url-fetch) (uri (cran-uri "bookdown" version)) (sha256 (base32 - "0c4pj5sg4cnz2b2kpxgr0wk1n1pf7wkn1npm76aghy4yxj29cj4y")) + "18j8ylaq5wnw1c0lif9a002kbymv04pd0i43ahmqkskkv1b13hdk")) ;; TODO: there is one more file to replace: ;; inst/resources/gitbook/js/app.min.js (snippet @@ -23342,32 +23402,28 @@ SELECT or UPDATE queries to an end-point.") (build-system r-build-system) (arguments (list - #:modules '((guix build utils) - (guix build r-build-system) - (srfi srfi-1)) + #:modules '((guix build r-build-system) + (guix build minify-build-system) + (guix build utils) + (ice-9 match)) + #:imported-modules `(,@%r-build-system-modules + (guix build minify-build-system)) #:phases - #~(modify-phases %standard-phases + #~(modify-phases (@ (guix build r-build-system) %standard-phases) (add-after 'unpack 'process-javascript (lambda* (#:key inputs #:allow-other-keys) (with-directory-excursion "inst/resources" (invoke "tar" "-xf" (assoc-ref inputs "js-mathquill") "-C" "/tmp" "--strip-components=2") - (call-with-values - (lambda () - (unzip2 - `((,(search-input-file inputs "/dist/clipboard.js") - "gitbook/js/clipboard.min.js") - (,(search-input-file inputs "/lunr.js") - "gitbook/js/lunr.js") - ("/tmp/mathquill.js" - "mathquill/mathquill.min.js")))) - (lambda (sources targets) - (for-each (lambda (source target) - (format #true "Processing ~a --> ~a~%" - source target) - (invoke "esbuild" source "--minify" - (string-append "--outfile=" target))) - sources targets))))))))) + (for-each (match-lambda + ((source . target) + (minify source #:target target))) + `((,(search-input-file inputs "/dist/clipboard.js") + . "gitbook/js/clipboard.min.js") + (,(search-input-file inputs "/lunr.js") + . "gitbook/js/lunr.js") + ("/tmp/mathquill.js" + . "mathquill/mathquill.min.js"))))))))) (propagated-inputs (list r-htmltools r-jquerylib @@ -23579,20 +23635,32 @@ the corresponding outputs (tables and graphs).") (define-public r-rjava (package (name "r-rjava") - (version "1.0-6") + (version "1.0-10") (source (origin (method url-fetch) (uri (cran-uri "rJava" version)) (sha256 (base32 - "1ijqhvnb8ab38cp9pwdf7zq7xqqlm6x94gkrab2dd98p6d4x1472")))) + "0srrjfqrcp7b6k62qv3d18r97k6kbcz0g4pn2y0rv0f5wlc6i0mm")) + (snippet + '(for-each delete-file + (list "inst/javadoc/jquery/jquery-ui.min.js" + "inst/javadoc/jquery/jszip/dist/jszip.min.js" + "inst/javadoc/jquery/jszip-utils/dist/jszip-utils-ie.min.js" + "inst/javadoc/jquery/jszip-utils/dist/jszip-utils.min.js"))))) (properties `((upstream-name . "rJava"))) (build-system r-build-system) (arguments (list + #:modules '((guix build r-build-system) + (guix build minify-build-system) + (guix build utils) + (ice-9 match)) + #:imported-modules `(,@%r-build-system-modules + (guix build minify-build-system)) #:phases - #~(modify-phases %standard-phases + #~(modify-phases (@ (guix build r-build-system) %standard-phases) (add-after 'unpack 'set-JAVA_HOME (lambda* (#:key inputs #:allow-other-keys) (let ((jdk (assoc-ref inputs "jdk"))) @@ -23604,11 +23672,27 @@ the corresponding outputs (tables and graphs).") (setenv "JAVA_CPPFLAGS" (string-append "-I" jdk "/include " "-I" jdk "/include/linux")) - (setenv "JAVA_LIBS" (search-input-file inputs "/lib/libjvm.so")))))))) + (setenv "JAVA_LIBS" (search-input-file inputs "/lib/libjvm.so"))))) + (add-after 'unpack 'replace-bundled-minified-JavaScript + (lambda _ + (with-directory-excursion "inst/javadoc" + (for-each (match-lambda + ((source . target) + (minify source #:target target))) + `(("jquery/jquery-ui.js" + . "jquery/jquery-ui.min.js") + ("jquery/jszip/dist/jszip.js" + . "jquery/jszip/dist/jszip.min.js") + ("jquery/jszip-utils/dist/jszip-utils-ie.js" + . "jquery/jszip-utils/dist/jszip-utils-ie.min.js") + ("jquery/jszip-utils/dist/jszip-utils.js" + . "jquery/jszip-utils/dist/jszip-utils.min.js"))))))))) (inputs `(("icu4c" ,icu4c) ("jdk" ,openjdk11 "jdk") ("zlib" ,zlib))) + (native-inputs + (list esbuild)) (home-page "https://www.rforge.net/rJava/") (synopsis "Low-Level R to Java interface") (description @@ -24961,14 +25045,14 @@ colored by the number of neighboring points. This is useful to visualize the (define-public r-arrow (package (name "r-arrow") - (version "13.0.0.1") + (version "14.0.0.2") (source (origin (method url-fetch) (uri (cran-uri "arrow" version)) (sha256 (base32 - "1h08zx7hvmsib7mi8yn0pk0y2bqqn5scr804ln0g30jwvcjx7w56")))) + "1dwap9lap0hac0bhi8ajz06n9ccjdyfr5s153k1lxfgicqnsaf3i")))) (properties `((upstream-name . "arrow"))) (build-system r-build-system) (inputs @@ -25049,14 +25133,14 @@ industry for machine learning tasks.") (define-public r-float (package (name "r-float") - (version "0.3-1") + (version "0.3-2") (source (origin (method url-fetch) (uri (cran-uri "float" version)) (sha256 (base32 - "0fzb9warfnb7h1krrf2hrxjp3lmpff7sln0r2718iqlhwam9v1zm")))) + "149affr0swb1vqnhkzm5lr4knfsh78ygswy123j1qj823zbhsfi3")))) (properties `((upstream-name . "float"))) (build-system r-build-system) (native-inputs @@ -25535,14 +25619,14 @@ dimensional low-discrepancy sequence.") (define-public r-dqrng (package (name "r-dqrng") - (version "0.3.1") + (version "0.3.2") (source (origin (method url-fetch) (uri (cran-uri "dqrng" version)) (sha256 (base32 - "0vmrbnix05a9h1bc4b7d999qkzkk63i1arzyblyhmvydv4m8cc72")))) + "171y7487flla0vqxmzvf9nls7vn046vplcgzvyiva3d418hwl0nd")))) (build-system r-build-system) (propagated-inputs (list r-bh r-rcpp r-sitmo)) @@ -25605,14 +25689,14 @@ feature effects. Key functions are: (define-public r-ibreakdown (package (name "r-ibreakdown") - (version "2.0.1") + (version "2.1.2") (source (origin (method url-fetch) (uri (cran-uri "iBreakDown" version)) (sha256 (base32 - "00jzrndb3ahsv6ihp2pvs732n9cc944m83vdinrl9v1pxd82prkh")))) + "1qacvfzknchfm27mhl7a357fnb6lzjkj4vh8lch5aljz82sdmdaf")))) (properties `((upstream-name . "iBreakDown"))) (build-system r-build-system) (propagated-inputs (list r-ggplot2)) @@ -25898,14 +25982,14 @@ the current document.") (define-public r-xgboost (package (name "r-xgboost") - (version "1.7.5.1") + (version "1.7.6.1") (source (origin (method url-fetch) (uri (cran-uri "xgboost" version)) (sha256 (base32 - "1g35r6qh4ivgbbvsdysiyy4c9gh396k3wdwz7scfb13g40zq7h2f")))) + "0q1x7ldvjankaf0gqcqiyiy514c5jascggfq6qrfyn3sravdcggj")))) (build-system r-build-system) (propagated-inputs (list r-data-table r-jsonlite r-matrix)) @@ -26274,14 +26358,14 @@ computed using the L1 (Manhattan, taxicab) metric.") (define-public r-leiden (package (name "r-leiden") - (version "0.4.3") + (version "0.4.3.1") (source (origin (method url-fetch) (uri (cran-uri "leiden" version)) (sha256 (base32 - "0f09k3mhb0di2cz1q95y6qd3rqh7xdybn0dpnd4ifqhfhr5lnika")))) + "1qihzjrwcb09aga27frcdrdv4dp0g295dbrk07fqykbjlb7vpv59")))) (properties `((upstream-name . "leiden"))) (build-system r-build-system) (propagated-inputs @@ -26742,14 +26826,14 @@ cell RNA-seq experiments.") (define-public r-assertr (package (name "r-assertr") - (version "3.0.0") + (version "3.0.1") (source (origin (method url-fetch) (uri (cran-uri "assertr" version)) (sha256 (base32 - "1wi3mz968clvwqg6mbm32zhj4vyfskklk72b4028cjsfdry6bpfp")))) + "0g7h88kkls6v1nfzbar40y56yv3lkqb7vrcy63xqgc99zcf8k4bc")))) (build-system r-build-system) (propagated-inputs (list r-dplyr r-mass r-rlang)) @@ -26932,13 +27016,13 @@ programming problems.") (define-public r-desolve (package (name "r-desolve") - (version "1.38") + (version "1.40") (source (origin (method url-fetch) (uri (cran-uri "deSolve" version)) (sha256 - (base32 "0sc933g0jx25b7fm5bl6is95mn4fn1sf8cgb6qzhlmmf8rfgxd50")))) + (base32 "1vq0yli1pkk3z92x1jgm4z19zwwhnwqdxvj4k2dmcnw7nrmsw2cc")))) (properties `((upstream-name . "deSolve"))) (build-system r-build-system) (native-inputs @@ -26961,13 +27045,13 @@ to ODEs by numerical differencing.") (define-public r-pmcmrplus (package (name "r-pmcmrplus") - (version "1.9.8") + (version "1.9.10") (source (origin (method url-fetch) (uri (cran-uri "PMCMRplus" version)) (sha256 - (base32 "1wqx5nikhpjsqnn7lgb2zy949sxmq7n3phlaix70as0zky534scg")))) + (base32 "0w0zxlq80n673zlrfw46qzidwshc6rxsqka6pahbr816zabzi0yq")))) (properties `((upstream-name . "PMCMRplus"))) (build-system r-build-system) (inputs (list gmp)) @@ -27759,14 +27843,14 @@ with style and various functions to supplement the tcltk package") (define-public r-accrual (package (name "r-accrual") - (version "1.3") + (version "1.4") (source (origin (method url-fetch) (uri (cran-uri "accrual" version)) (sha256 (base32 - "11clm9s5c5518nmp6hd6pjnp0s28y92b2i2x0xgj4j5g816p4j3z")))) + "0dygp8xar6dqx822ghjqvi8c597xjb7bqn57475fs4nw5zz709lk")))) (properties `((upstream-name . "accrual"))) (build-system r-build-system) (propagated-inputs @@ -28213,14 +28297,14 @@ the align-and-count method.") (define-public r-filelock (package (name "r-filelock") - (version "1.0.2") + (version "1.0.3") (source (origin (method url-fetch) (uri (cran-uri "filelock" version)) (sha256 (base32 - "00ql5fw1hidpfnm0szaavf43ahmsnvdbi8i5lr1nrcc90yaiaadc")))) + "0dqi0w92zq1f9542ma2nk5gkqzfmd4jlf34vysb4vv7mag20xk9d")))) (properties `((upstream-name . "filelock"))) (build-system r-build-system) (home-page "https://github.com/r-lib/filelock") @@ -28476,14 +28560,14 @@ provided as well.") (define-public r-tuner (package (name "r-tuner") - (version "1.4.5") + (version "1.4.6") (source (origin (method url-fetch) (uri (cran-uri "tuneR" version)) (sha256 (base32 - "1ysjn8mclrjp4qr4m45qanm20gpdbikmgzfrcn2a0phfz8nhvlpm")))) + "1l270rk1m3967fvgpshrbd71l7ns74wdhivbmavayk68dnsiyi65")))) (properties `((upstream-name . "tuneR"))) (build-system r-build-system) (propagated-inputs (list r-signal)) @@ -30838,14 +30922,14 @@ and Euclidean distance is particularly fast.") (define-public r-isocodes (package (name "r-isocodes") - (version "2022.09.29") + (version "2023.12.07") (source (origin (method url-fetch) (uri (cran-uri "ISOcodes" version)) (sha256 (base32 - "1rag5mb3bbyxp8n32rhfyy752cy9hh5j80lp9xljj70scvglzbjb")))) + "03nrcv1hh12yyqql03cr94kk3hnpynvrm4kv3plmdli2b3n1yqvk")))) (properties `((upstream-name . "ISOcodes"))) (build-system r-build-system) (home-page "https://cran.r-project.org/package=ISOcodes") @@ -30882,18 +30966,20 @@ analysis and natural language processing.") (define-public r-spacyr (package (name "r-spacyr") - (version "1.2.1") + (version "1.3.0") (source (origin (method url-fetch) (uri (cran-uri "spacyr" version)) (sha256 (base32 - "1b2ccgwsiqkvp7w37x8k7699c676q16vfrybkrfvyczyhki4s6nw")))) + "1z4nx8phrc0l73xic2lkff03a54kjw343425h5mm2afz6zidcmf4")))) (properties `((upstream-name . "spacyr"))) (build-system r-build-system) (propagated-inputs (list r-data-table r-reticulate)) + (native-inputs + (list r-r-rsp)) (home-page "https://spacyr.quanteda.io") (synopsis "R wrapper for the spaCy NLP library") (description @@ -30967,14 +31053,14 @@ machine learning, visually representing text and text analyses, and more.") (define-public r-topicmodels (package (name "r-topicmodels") - (version "0.2-14") + (version "0.2-15") (source (origin (method url-fetch) (uri (cran-uri "topicmodels" version)) (sha256 (base32 - "1jaw9fjcl5ac0l57lack9gswqx2wzid1gkwsksyr4dlpxbw0zm5c")))) + "1l3pmz6n0sd57bf3d16m9766285d2pmndmv36rf5pffpwiw0zdbi")))) (properties `((upstream-name . "topicmodels"))) (build-system r-build-system) (inputs @@ -30993,14 +31079,14 @@ Gibbs sampling by Xuan-Hieu Phan and co-authors.") (define-public r-stm (package (name "r-stm") - (version "1.3.6.1") + (version "1.3.7") (source (origin (method url-fetch) (uri (cran-uri "stm" version)) (sha256 (base32 - "0izf68s8n6jlzksnn2md0apb4b8gm6513r0aa45yrm71gb0v29yc")))) + "0cvv6q5r55iqk327rav25dymvnn77rj8chmgkbkwd0c1dpqf4x5q")))) (properties `((upstream-name . "stm"))) (build-system r-build-system) (propagated-inputs @@ -31050,14 +31136,14 @@ errors; tetrachoric and biserial correlations are special cases.") (define-public r-msm (package (name "r-msm") - (version "1.7") + (version "1.7.1") (source (origin (method url-fetch) (uri (cran-uri "msm" version)) (sha256 (base32 - "1c0dvmrjxx551n207fq4yjr56rdchaf1zzldxx4rx4b6g7jgi2bz")))) + "0nvqgx74rwx061vgmhvc872bwq8smccm2n8r51s37vbfjqmphd6i")))) (properties `((upstream-name . "msm"))) (build-system r-build-system) (propagated-inputs @@ -31332,14 +31418,14 @@ Complete access to optimized C functions is made available with (define-public r-openmx (package (name "r-openmx") - (version "2.21.10") + (version "2.21.11") (source (origin (method url-fetch) (uri (cran-uri "OpenMx" version)) (sha256 (base32 - "1kll5iim5l71dxkjd8y9ma1494818j369gp92qdsy3x6lxy244ym")))) + "1k3i82higil43w4pryg1ghpswa8vxmc28dcv60gvkmmjrnwp098m")))) (properties `((upstream-name . "OpenMx"))) (build-system r-build-system) (propagated-inputs @@ -31353,7 +31439,7 @@ Complete access to optimized C functions is made available with r-rcppparallel r-rpf r-stanheaders)) - (native-inputs (list r-knitr gfortran)) + (native-inputs (list gfortran r-knitr)) (home-page "http://openmx.ssri.psu.edu") (synopsis "Extended structural equation modelling") (description @@ -32142,14 +32228,14 @@ trend test.") (define-public r-keyring (package (name "r-keyring") - (version "1.3.1") + (version "1.3.2") (source (origin (method url-fetch) (uri (cran-uri "keyring" version)) (sha256 (base32 - "113rjhihqfhxdihnf6nwqbsknlnm8pqyhvnyxx624gyajl9mn3a7")))) + "0mps6q7yayx5l78vlq567pndlsjk71izd65znz3lj4dfbh0qq046")))) (properties `((upstream-name . "keyring"))) (build-system r-build-system) (propagated-inputs @@ -32199,13 +32285,13 @@ climate data.") (define-public r-rlecuyer (package (name "r-rlecuyer") - (version "0.3-7") + (version "0.3-8") (source (origin (method url-fetch) (uri (cran-uri "rlecuyer" version)) (sha256 (base32 - "0g5z26wsbv3wzrc3gl1z97qxdk5m2pvfg3f5zqkz98wzh1z49b35")))) + "1jbm5h8zbsx1yw148piw9p0rj9a7cm0ywgidrzi5ylrp6dad7gk6")))) (properties `((upstream-name . "rlecuyer"))) (build-system r-build-system) (home-page @@ -32546,14 +32632,14 @@ argon2 algorithm.") (define-public r-getpass (package (name "r-getpass") - (version "0.2-2") + (version "0.2-4") (source (origin (method url-fetch) (uri (cran-uri "getPass" version)) (sha256 (base32 - "03ydafhh0sk3rcnpr3paajyji64x2ddp6p814p9mvbmyrblcgzcc")))) + "0a0q9v29z49s1iprs5di01wlflxj74sbizwsrzjfc538nkwfpnqm")))) (properties `((upstream-name . "getPass"))) (build-system r-build-system) (propagated-inputs @@ -33418,18 +33504,20 @@ input.") (define-public r-lightgbm (package (name "r-lightgbm") - (version "3.3.5") + (version "4.2.0") (source (origin (method url-fetch) (uri (cran-uri "lightgbm" version)) (sha256 (base32 - "1bnzggia48jkd1ffdzhznmbk76dw3mab65i7rmg967zcflapv7rh")))) + "0c0q597agzdaimy0q1mssdpm0pw4yvqq9w6n8syvgz1g5q0mcwqi")))) (properties `((upstream-name . "lightgbm"))) (build-system r-build-system) (propagated-inputs (list r-data-table r-jsonlite r-matrix r-r6)) + (native-inputs + (list r-knitr)) (home-page "https://github.com/Microsoft/LightGBM") (synopsis "Light gradient boosting machine") (description @@ -33706,13 +33794,13 @@ doi.org/10.1007/s10115-013-0679-x} for details.") (define-public r-memisc (package (name "r-memisc") - (version "0.99.31.6") + (version "0.99.31.7") (source (origin (method url-fetch) (uri (cran-uri "memisc" version)) (sha256 (base32 - "0vnrq6lkqzba76222fsw9hp0sasq65r43iyc23nw6q3fzi7nncsj")))) + "0drn923y8bwwwk2csa7l9b3fd06zfrfgi3b0pn7b23aja1c1h0xl")))) (properties `((upstream-name . "memisc"))) (build-system r-build-system) (propagated-inputs (list r-data-table r-jsonlite r-lattice r-mass r-yaml)) @@ -34099,13 +34187,13 @@ for spatial data on a linear network.") (define-public r-spatstat-random (package (name "r-spatstat-random") - (version "3.2-1") + (version "3.2-2") (source (origin (method url-fetch) (uri (cran-uri "spatstat.random" version)) (sha256 - (base32 "1p1imyqrpvdhsc24pq3mvdg9n29h6q8zlawdyahqiymynyp22m4j")))) + (base32 "01rsh7z9prsdrqlbc2761sf54w24z7jzj64ijfzy8l5ca56fxij8")))) (properties `((upstream-name . "spatstat.random"))) (build-system r-build-system) (propagated-inputs (list r-spatstat-data r-spatstat-geom r-spatstat-utils)) @@ -34158,14 +34246,14 @@ formal inference.") (define-public r-gaston (package (name "r-gaston") - (version "1.5.9") + (version "1.6") (source (origin (method url-fetch) (uri (cran-uri "gaston" version)) (sha256 (base32 - "1f4pr5s4p4rw1smvsh2gwjxp7hh43j1fpadl286ma9i62kirpyq7")))) + "1knjyw2dsarljj2zsqp3hi6hk6m90sfqp2l535h3arj70l3rq9x4")))) (properties `((upstream-name . "gaston"))) (build-system r-build-system) (inputs (list zlib)) @@ -34184,14 +34272,14 @@ for linear mixed models (AIREML).") (define-public r-cpp11 (package (name "r-cpp11") - (version "0.4.6") + (version "0.4.7") (source (origin (method url-fetch) (uri (cran-uri "cpp11" version)) (sha256 (base32 - "1csmj1cl07lsbrg8qp26cs0lx1p0zi7alanmi83rhcqxcxa6kifi")))) + "0i234s1g1vc6m2sqxia5r1gaca05znjv4bff5dj74fach9k147c0")))) (properties `((upstream-name . "cpp11"))) (build-system r-build-system) (native-inputs (list r-knitr)) @@ -34304,14 +34392,14 @@ model.") (define-public r-clusterr (package (name "r-clusterr") - (version "1.3.1") + (version "1.3.2") (source (origin (method url-fetch) (uri (cran-uri "ClusterR" version)) (sha256 (base32 - "1xn0zkgjagfnqagk2yllaa6j8rlxq2f4pn3yqj4gff90bc0cv3kf")))) + "1bs1sl3yy90zx4ni0lhvdivzfas6i4v9203m59njvk5df9x82ffp")))) (properties `((upstream-name . "ClusterR"))) (build-system r-build-system) (propagated-inputs @@ -34985,14 +35073,14 @@ model.") (define-public r-igraph (package (name "r-igraph") - (version "1.5.1") + (version "1.6.0") (source (origin (method url-fetch) (uri (cran-uri "igraph" version)) (sha256 (base32 - "0jmii8kzs7hpf3xmlbfb8d21q79z7ramc18zcjamsjmdfwg0mndd")))) + "1f1v8pv3slmjw11w6a97885114whw6ykky3jviwj1rrqzcvwq3j1")))) (build-system r-build-system) (native-inputs (list gfortran r-knitr)) @@ -35280,14 +35368,14 @@ different types of resampling objects (e.g. bootstrap, cross-validation).") (define-public r-dicedesign (package (name "r-dicedesign") - (version "1.9") + (version "1.10") (source (origin (method url-fetch) (uri (cran-uri "DiceDesign" version)) (sha256 (base32 - "1a8ixa65xgyfri03cviic8qi2plbhdyz8m02bwif8w94w0q3ghlk")))) + "0gf76f4jy8lbmw045q3ncs4ly07clh6gdfbmlnyk45wcgch3nm06")))) (properties `((upstream-name . "DiceDesign"))) (build-system r-build-system) (home-page "http://dice.emse.fr/") @@ -36020,14 +36108,14 @@ covariate (usually group indicator) and the scores.") (define-public r-qtl (package (name "r-qtl") - (version "1.60") + (version "1.66") (source (origin (method url-fetch) (uri (cran-uri "qtl" version)) (sha256 (base32 - "1bfqb5rz1qxrq8876d13m8zfsn88xn9xsymjkzvd8xka5kz5v7lf")))) + "10fnc3ms97rdqsqxz5jpvg2cmrwmz69wjxxs3h65r1yhy94pssnl")))) (build-system r-build-system) (home-page "https://rqtl.org/") (synopsis "R package for analyzing QTL experiments in genetics") @@ -36043,12 +36131,12 @@ genome scans.") (define-public r-qtl2 (package (name "r-qtl2") - (version "0.32") + (version "0.34") (source (origin (method url-fetch) (uri (cran-uri "qtl2" version)) (sha256 - (base32 "1sbkflnb6s8k8fwkhs7pg1s9jw13jd3y5a15xrqmy391bm5s26rn")))) + (base32 "1h3wim850b2xk09z9vgnyfp20k7vg94zf7szcrlw5nf1w9gn4wzy")))) (build-system r-build-system) (propagated-inputs (list r-data-table @@ -36069,14 +36157,14 @@ designs. Broman et al. (2018) <doi:10.1534/genetics.118.301595>.") (define-public r-seqminer (package (name "r-seqminer") - (version "9.1") + (version "9.3") (source (origin (method url-fetch) (uri (cran-uri "seqminer" version)) (sha256 (base32 - "0vdprasxy4dc9p5k43xgcmi0q50iapgcam43qzbh1kr0vi6fgqkr")))) + "07dig3ydybmi55qy1zpkxpw568midgc1bzdl3k36734yqnsp2sjs")))) (build-system r-build-system) (inputs (list zlib)) @@ -36142,14 +36230,14 @@ data to rasters. It speeds up plotting of data with millions of points.") (define-public r-seuratobject (package (name "r-seuratobject") - (version "5.0.0") + (version "5.0.1") (source (origin (method url-fetch) (uri (cran-uri "SeuratObject" version)) (sha256 (base32 - "0wlr53cswq7a7zzzzkif82iy4xrrd2afz093b265kjlq4qxmzn9d")))) + "0hgrymldcqja40prr23gwx1c7lvwjjwcla3dld6x8wzkzqh1gkjs")))) (properties `((upstream-name . "SeuratObject"))) (build-system r-build-system) (propagated-inputs @@ -36208,13 +36296,13 @@ other R users.") (define-public r-seurat (package (name "r-seurat") - (version "5.0.0") + (version "5.0.1") (source (origin (method url-fetch) (uri (cran-uri "Seurat" version)) (sha256 (base32 - "1hvqxfskwpw06dxc9hc9zvxqb73wr7qjxgrqgyjklxaq1xhr335v")))) + "038mqnavn3gxxx41yzq0q7gfnnx15dizryv8l374zwavpqsb84q7")))) (properties `((upstream-name . "Seurat"))) (build-system r-build-system) (propagated-inputs @@ -36864,13 +36952,13 @@ package also supersedes the package @code{BBmisc}.") (define-public r-mlr3pipelines (package (name "r-mlr3pipelines") - (version "0.5.0-1") + (version "0.5.0-2") (source (origin (method url-fetch) (uri (cran-uri "mlr3pipelines" version)) (sha256 (base32 - "1pn6zi1qy4ql7zkkzmx52b5l9agppr1rlv3pdnm1dy8y0yc7imhd")))) + "0iv09qmr1gpipcylw8mp1y7kqjljy8p5sx466l1wxfaqkf7kw15j")))) (build-system r-build-system) (propagated-inputs (list r-backports @@ -36949,13 +37037,13 @@ implemented as @code{R6} classes.") (define-public r-mlr3 (package (name "r-mlr3") - (version "0.16.1") + (version "0.17.0") (source (origin (method url-fetch) (uri (cran-uri "mlr3" version)) (sha256 (base32 - "09klavihc2j6wsd9m2ycppl2ir85z5cxlxl9h6ay9skacylk559n")))) + "1gnn9i33sa2s0s35lhbbjqffjj9m7yhnhh7lyvp7jv9sncw123sa")))) (build-system r-build-system) (propagated-inputs (list r-backports @@ -36986,13 +37074,13 @@ computational operations, add-on packages provide additional functionality.") (define-public r-mlr3learners (package (name "r-mlr3learners") - (version "0.5.6") + (version "0.5.7") (source (origin (method url-fetch) (uri (cran-uri "mlr3learners" version)) (sha256 (base32 - "1m0psjqcl2pfy73wmc29vyz122v0kqmws6d0dgl7wsy1csfjsjm2")))) + "0l4f500qa2xfcwd4b81sxx9cvj9j349bl77c9vwi45sfsjk19w8g")))) (build-system r-build-system) (propagated-inputs (list r-checkmate @@ -37043,13 +37131,13 @@ annealing.") (define-public r-mlr3tuning (package (name "r-mlr3tuning") - (version "0.19.0") + (version "0.19.2") (source (origin (method url-fetch) (uri (cran-uri "mlr3tuning" version)) (sha256 (base32 - "1iz7izmkx11jma95305wq8aapi4dmqg20flgxxvdvrfy6hf98k33")))) + "1d27m6yzwr7chpf19q6mwpj2fyz9vv8k6nbg8z9615hmbp96lan5")))) (build-system r-build-system) (propagated-inputs (list r-bbotk @@ -37900,13 +37988,13 @@ data you need the @code{pdftools} package.") (define-public r-pbdmpi (package (name "r-pbdmpi") - (version "0.5-0") + (version "0.5-1") (source (origin (method url-fetch) (uri (cran-uri "pbdMPI" version)) (sha256 (base32 - "0wfx33jhdrwp97chsp9v8z2yf49shycvky8dwl9pgwqd9l69aw7x")))) + "047pxra6n3pacyqg5qdg8dbz32s8bq8z9dyi5rvs0ax76vr1v8v4")))) (properties `((upstream-name . "pbdMPI"))) (build-system r-build-system) (arguments @@ -38299,14 +38387,14 @@ variability than the Poisson, but less than the negative binomial.") (define-public r-rjsonio (package (name "r-rjsonio") - (version "1.3-1.8") + (version "1.3-1.9") (source (origin (method url-fetch) (uri (cran-uri "RJSONIO" version)) (sha256 (base32 - "1xak6n15ck7rj9swxk99vpjly1naxgz9gj6zjmib2lkq7inmgw7n")))) + "1kiy36hjzh5if5npqv5mdvkr5pdfg3ibj178gr0kz1r81i5h6wzi")))) (properties `((upstream-name . "RJSONIO"))) (build-system r-build-system) (home-page "https://cran.r-project.org/package=RJSONIO") @@ -38604,14 +38692,14 @@ time zone manipulations.") (define-public r-vroom (package (name "r-vroom") - (version "1.6.4") + (version "1.6.5") (source (origin (method url-fetch) (uri (cran-uri "vroom" version)) (sha256 (base32 - "0kg25b3drfv4dgvciwsv6wgw6v0lf1maigyhllw9hh114rmzjild")))) + "0qapkgn5k9g07l48scgln8y1k6fkkzsq5la5fjfh9if9b0ga5p3v")))) (properties `((upstream-name . "vroom"))) (build-system r-build-system) (propagated-inputs @@ -38690,13 +38778,13 @@ with well defined variance functions).") (define-public r-webutils (package (name "r-webutils") - (version "1.1") + (version "1.2.0") (source (origin (method url-fetch) (uri (cran-uri "webutils" version)) (sha256 - (base32 "16a6ds0fnb6y8i1r9ba1hf1ydb53am57s070b3hi5jmrs84b9qik")))) + (base32 "0g3zrbwiyq9z0chc66dr8gndqs0xdqkc49bpisbb7ns3g0fkl92i")))) (properties `((upstream-name . "webutils"))) (build-system r-build-system) (propagated-inputs @@ -38855,14 +38943,14 @@ the @code{raster} package that is suitable for extracting raster values using (define-public r-stringfish (package (name "r-stringfish") - (version "0.15.8") + (version "0.16.0") (source (origin (method url-fetch) (uri (cran-uri "stringfish" version)) (sha256 (base32 - "16w3i3d7jw2s1hzxr3mngrh7yjxvhswqdlpjw5g4z25i84lixcnz")))) + "14vrg6mkwwgw1klgpvjn7936yfxav55rainz71xjjih2j21vq21n")))) (properties `((upstream-name . "stringfish"))) (build-system r-build-system) (propagated-inputs @@ -38903,14 +38991,14 @@ package.") (define-public r-qs (package (name "r-qs") - (version "0.25.5") + (version "0.25.7") (source (origin (method url-fetch) (uri (cran-uri "qs" version)) (sha256 (base32 - "0k0688fz95xwb4s9fjgnnif3kzbisxgfgbfad07gpzd0123ki1rz")))) + "0a0jay9p2k0ahf08s94dr1w66qhbgzs87vkaanwkd4j6lvijncz7")))) (properties `((upstream-name . "qs"))) (build-system r-build-system) (arguments @@ -40211,13 +40299,13 @@ tests or outside of a testing context.") (define-public r-iotools (package (name "r-iotools") - (version "0.3-2") + (version "0.3-5") (source (origin (method url-fetch) (uri (cran-uri "iotools" version)) (sha256 - (base32 "07q0z0kszm1xx5hfhisfliyrcsxd8dc5mx0a2bwwnv5l1xzmix17")))) + (base32 "12xlf31aawj5sxanb2m63r665a9x5v87q4ig8qkvaygpdg51gycw")))) (properties `((upstream-name . "iotools"))) (build-system r-build-system) (home-page "https://www.rforge.net/iotools") @@ -40662,16 +40750,16 @@ API.") (define-public r-spacetime (package (name "r-spacetime") - (version "1.3-0") + (version "1.3-1") (source (origin (method url-fetch) (uri (cran-uri "spacetime" version)) (sha256 (base32 - "06slxywh94g4k7dxnfs9g5yjvwjk2lxwydrjwawg0mgkqsjh569f")))) + "1kr12pbi6hqns30kqy4jv5pcm3lgfcfyc2gwaak1jbg894csahhr")))) (properties `((upstream-name . "spacetime"))) (build-system r-build-system) - (propagated-inputs (list r-lattice r-sp r-zoo r-xts r-intervals)) + (propagated-inputs (list r-intervals r-lattice r-sp r-xts r-zoo)) (native-inputs (list r-knitr)) (home-page "https://github.com/edzer/spacetime/") (synopsis "Classes and methods for spatio-temporal data") |