diff options
Diffstat (limited to 'gnu/packages/cran.scm')
| -rw-r--r-- | gnu/packages/cran.scm | 844 |
1 files changed, 617 insertions, 227 deletions
diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index 731facb4e5..4ad1bfa760 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -257,14 +257,14 @@ etc.") (define-public r-datawizard (package (name "r-datawizard") - (version "0.4.1") + (version "0.5.0") (source (origin (method url-fetch) (uri (cran-uri "datawizard" version)) (sha256 (base32 - "09lyh1awm2rplfzgwbdw4iy76mbaqwjd4hwlrsgvxj9pwdnjs4cx")))) + "022bbfaszbpml3i281cal7z0y1i380i1zjnhk1ldy5r535vs9cgq")))) (properties `((upstream-name . "datawizard"))) (build-system r-build-system) (propagated-inputs @@ -708,14 +708,14 @@ similar rank-based tests for equal probability distributions due to Neuhauser (define-public r-v8 (package (name "r-v8") - (version "4.2.0") + (version "4.2.1") (source (origin (method url-fetch) (uri (cran-uri "V8" version)) (sha256 (base32 - "0hs7ajjw6y3q7mp7z00a9712y4cn6wgcnk5dbjbzlc6cfk4zsqkc")))) + "1w1zihmhrygn2i674wimbv7xqjnwlld4x3ndvh5dl4cdg7s1m24r")))) (properties `((upstream-name . "V8"))) (build-system r-build-system) (arguments @@ -860,13 +860,13 @@ series of numeric vectors/matrices and factors.") (define-public r-fontawesome (package (name "r-fontawesome") - (version "0.2.2") + (version "0.3.0") (source (origin (method url-fetch) (uri (cran-uri "fontawesome" version)) (sha256 - (base32 "0r6zb5175cr4ybqj6bl0mbhadwv9xjxaf32yjc0y76rw3d6vcbap")))) + (base32 "0c8sb8isiyn2gr3xfql75yyssf9wlb152cw67whq83aqsksgrvjd")))) (properties `((upstream-name . "fontawesome"))) (build-system r-build-system) (propagated-inputs @@ -1141,16 +1141,22 @@ respecting the grammar of its graphics paradigm.") (define-public r-ggside (package (name "r-ggside") - (version "0.2.0") + (version "0.2.1") (source (origin (method url-fetch) (uri (cran-uri "ggside" version)) (sha256 (base32 - "1x505zizv7hf65pxp9j5v92c3bchhxh9dsrkk1m55kwqqnsl5nza")))) + "1vl7kzgmi5xxxsqvyg4cm4xwd3lfjgysay1lw6hri5vj22mnga5h")))) (properties `((upstream-name . "ggside"))) (build-system r-build-system) - (propagated-inputs (list r-ggplot2 r-glue r-gtable r-rlang r-scales)) + (propagated-inputs + (list r-ggplot2 + r-glue + r-gtable + r-rlang + r-scales + r-tibble)) (native-inputs (list r-knitr)) (home-page "https://cran.r-project.org/package=ggside") (synopsis "Side grammar graphics that extends @code{ggplot2}") @@ -1376,6 +1382,34 @@ naming conventions as distance methods of existing R packages.") control over dimensions and appearance.") (license license:gpl2+))) +(define-public r-philentropy + (package + (name "r-philentropy") + (version "0.6.0") + (source (origin + (method url-fetch) + (uri (cran-uri "philentropy" version)) + (sha256 + (base32 + "1dpf4hfflp4mcql4na46wzcq1flabkipiwyycz9wj5xbxlmcz2hk")))) + (properties `((upstream-name . "philentropy"))) + (build-system r-build-system) + (propagated-inputs (list r-kernsmooth r-poorman r-rcpp)) + (native-inputs (list r-knitr)) + (home-page "https://github.com/drostlab/philentropy") + (synopsis + "Similarity and distance quantification between probability functions") + (description + "This package computes optimized distance and similarity measures for +comparing probability functions (Drost (2018) <doi:10.21105/joss.00765>). +These comparisons between probability functions have their foundations in a +broad range of scientific disciplines from mathematics to ecology. The aim of +this package is to provide a core framework for clustering, classification, +statistical inference, goodness-of-fit, non-parametric statistics, information +theory, and machine learning tasks that are based on comparing univariate or +multivariate probability functions.") + (license license:gpl2))) + (define-public r-pnwcolors (package (name "r-pnwcolors") @@ -1448,6 +1482,26 @@ qualitative palettes with many (20-30 or more) colors. See Coombes and colleagues (2019) @url{https://doi:10.18637/jss.v090.c01}.") (license license:asl2.0))) +(define-public r-poorman + (package + (name "r-poorman") + (version "0.2.5") + (source (origin + (method url-fetch) + (uri (cran-uri "poorman" version)) + (sha256 + (base32 + "05h7rjgri0b5a1jd0388p7lqvvg0y8z6g42f9bxc80jg1z730axr")))) + (properties `((upstream-name . "poorman"))) + (build-system r-build-system) + (native-inputs (list r-knitr)) + (home-page "https://nathaneastwood.github.io/poorman/") + (synopsis "Dependency-free recreation of dplyr") + (description + "This package provides a replication of key functionality from +@code{dplyr} and the wider @code{tidyverse} using only @code{base}.") + (license license:expat))) + (define-public r-ecp (package (name "r-ecp") @@ -1754,14 +1808,14 @@ data types as well.") (define-public r-tidyverse (package (name "r-tidyverse") - (version "1.3.1") + (version "1.3.2") (source (origin (method url-fetch) (uri (cran-uri "tidyverse" version)) (sha256 (base32 - "0ck6xmsw5p168jmw2fqv79fzfnw5jckfra7mfii261j6kl89bkw3")))) + "0qfgq4p2aq95j39xd5kcing2cacy7rzy7f6zf0bnpsa95svziyrp")))) (build-system r-build-system) (propagated-inputs (list r-broom @@ -1915,14 +1969,14 @@ same time tries to group instances from the same class together.") (define-public r-callr (package (name "r-callr") - (version "3.7.0") + (version "3.7.1") (source (origin (method url-fetch) (uri (cran-uri "callr" version)) (sha256 (base32 - "02inaf3c7b0hikii7p2zwaphrq5myv4in92d9jxd1ilmhla5awnn")))) + "1vc986d571nwmb5lw5rq3d38z4qw36lr94s3apz50c2v79xsbqrp")))) (build-system r-build-system) (propagated-inputs (list r-r6 r-processx)) @@ -2199,13 +2253,13 @@ a list of p-values.") (define-public r-htmltools (package (name "r-htmltools") - (version "0.5.2") + (version "0.5.3") (source (origin (method url-fetch) (uri (cran-uri "htmltools" version)) (sha256 (base32 - "1yv74ydyqm28gfhimmr7825sj1iaawpwsnzq05c2ma756q2dbivx")))) + "0krjyz99q7zvdfg60b128c0zwr36h54gb05jw9c874d8kqv1ni9c")))) (build-system r-build-system) (propagated-inputs (list r-base64enc r-digest r-fastmap r-rlang)) @@ -2241,13 +2295,13 @@ applications.") (define-public r-htmltable (package (name "r-htmltable") - (version "2.4.0") + (version "2.4.1") (source (origin (method url-fetch) (uri (cran-uri "htmlTable" version)) (sha256 - (base32 "17csp0ry4iy4m5xy271dn5wd81v4p03l79swmvlfxkvpdmhvb8jc")))) + (base32 "14qg65nw0bpikqs1hb1x7apzdzrnnl3ykjnks67kkp46v1skwzrs")))) (properties `((upstream-name . "htmlTable"))) (build-system r-build-system) (propagated-inputs @@ -2403,14 +2457,14 @@ rules and utility functions for adaptive GH quadrature.") (define-public r-rstpm2 (package (name "r-rstpm2") - (version "1.5.6") + (version "1.5.7") (source (origin (method url-fetch) (uri (cran-uri "rstpm2" version)) (sha256 (base32 - "17mhzfxh761vl64ar6pynpj3k2jkhjgbacxsjhkrfkbmy3aiv0d1")))) + "1gsizffplj4m9x1ln82f76936psgxn9cii45m7658lpwf2nzwli2")))) (properties `((upstream-name . "rstpm2"))) (build-system r-build-system) (propagated-inputs @@ -2495,14 +2549,14 @@ jQuery.") (define-public r-sass (package (name "r-sass") - (version "0.4.1") + (version "0.4.2") (source (origin (method url-fetch) (uri (cran-uri "sass" version)) (sha256 (base32 - "1fq8wqnxmx10lg0dh4qzmxdkhd22fjh8vhassapxb1chsimwn3w5")))) + "0iln5ky6k1ix0gddlyw4rr2953kc499x66bcyi9yiyp91nfh82dl")))) (properties `((upstream-name . "sass"))) (build-system r-build-system) (propagated-inputs @@ -2557,14 +2611,14 @@ expression estimates for all genes.") (define-public r-bslib (package (name "r-bslib") - (version "0.3.1") + (version "0.4.0") (source (origin (method url-fetch) (uri (cran-uri "bslib" version)) (sha256 (base32 - "0jcqklry1nkibz0sydsz5xdsnb4wnrrhvmyr9ji3k45bbipbap2z")) + "1hkmaj0mpygbf6qr1955biv9z4q3khflyqi5x0c3dwi6qz74xspv")) (snippet '(for-each delete-file '("inst/lib/bs-a11y-p/plugins/js/bootstrap-accessibility.min.js" @@ -2604,7 +2658,13 @@ expression estimates for all genes.") (string-append "--outfile=" target))) sources targets))))))))) (propagated-inputs - (list r-htmltools r-jquerylib r-jsonlite r-rlang r-sass)) + (list r-cachem + r-htmltools + r-jquerylib + r-jsonlite + r-memoise + r-rlang + r-sass)) (native-inputs `(("esbuild" ,esbuild) ("js-bootstrap4-bundle" @@ -2617,10 +2677,10 @@ expression estimates for all genes.") ("js-bootstrap5-bundle" ,(origin (method url-fetch) - (uri "https://raw.githubusercontent.com/twbs/bootstrap/v5.0.2/dist/js/bootstrap.bundle.js") + (uri "https://raw.githubusercontent.com/twbs/bootstrap/v5.1.3/dist/js/bootstrap.bundle.js") (sha256 (base32 - "06vin94nqw1vzs4zrqcms8z9js9fckbj8gwyx07awm8jkjhnqfhl")))))) + "116979i2vr1y9i6g7n5iir19p85xwr642scbl9jcqdr0w9801nw6")))))) (home-page "https://rstudio.github.io/bslib/") (synopsis "Custom Bootstrap Sass themes for shiny and rmarkdown") (description @@ -3111,13 +3171,13 @@ in a ggplot2 plot.") (define-public r-mbess (package (name "r-mbess") - (version "4.9.0") + (version "4.9.1") (source (origin (method url-fetch) (uri (cran-uri "MBESS" version)) (sha256 - (base32 "0qmyvjx2zn5hlzdbz8c94g8l4707swhn7sq9mxkdqiydmflzv0b5")))) + (base32 "18klyyjvmwggv4ma2x77jac3640yxbsbinl3s2rp1ik4n9phnjd0")))) (properties `((upstream-name . "MBESS"))) (build-system r-build-system) (propagated-inputs @@ -3315,7 +3375,7 @@ punctuation.") (synopsis "Inter-widget interactivity for HTML widgets") (description "This package provides building blocks for allowing HTML widgets to -communicate with each other, with Shiny or without (i.e. static @code{.html} +communicate with each other, with Shiny or without (i.e., static @code{.html} files). It currently supports linked brushing and filtering.") (license license:expat))) @@ -3815,13 +3875,13 @@ error stream.") (define-public r-pls (package (name "r-pls") - (version "2.8-0") + (version "2.8-1") (source (origin (method url-fetch) (uri (cran-uri "pls" version)) (sha256 - (base32 "1gqq8rcq6p0hs2gfzwfj690rz3pwywmnv8qzcv0wsd6aaqkskwzg")))) + (base32 "137jg3x7aqwyki29i4kzp8d6imn17nq6wzzfjw5q19pixvmpybp2")))) (build-system r-build-system) (home-page "https://mevik.net/work/software/pls.html") (synopsis "Partial Least Squares and Principal Component Regression") @@ -3944,13 +4004,13 @@ value for each cluster in a dendrogram.") (define-public r-rcpp (package (name "r-rcpp") - (version "1.0.8.3") + (version "1.0.9") (source (origin (method url-fetch) (uri (cran-uri "Rcpp" version)) (sha256 - (base32 "1gzqfn1xjawzig30ama3rldykqpcn6bd8sg684mrfvpmv96bi9cx")))) + (base32 "0xli48y9nsj8x8p5vkhisiz4l23g8r2623rn0i4xb5javh3fqz40")))) (build-system r-build-system) (home-page "http://www.rcpp.org") (synopsis "Seamless R and C++ integration") @@ -4252,14 +4312,14 @@ rows, dropping names) to see if the modified versions are identical.") (define-public r-dendextend (package (name "r-dendextend") - (version "1.15.2") + (version "1.16.0") (source (origin (method url-fetch) (uri (cran-uri "dendextend" version)) (sha256 (base32 - "06wjs8451hmnimzgngpzbai3yrgy33133vzzapa8jib9crdqi8sb")))) + "0rl4f0b73s1gdjfxgpnz87lhv131qazxb6vsv2935ad266fd0bzc")))) (build-system r-build-system) (propagated-inputs (list r-ggplot2 r-magrittr r-viridis)) @@ -5276,14 +5336,14 @@ the Kaplan-Meier and Aalen-Johansen methods.") (define-public r-dimred (package (name "r-dimred") - (version "0.2.5") + (version "0.2.6") (source (origin (method url-fetch) (uri (cran-uri "dimRed" version)) (sha256 (base32 - "1z8fqdc8mslvfix8ngxs1y2yrvlanp5581hwp2nzldj6mk5kn15b")))) + "05zlkf6hjdqqr1sgw7ww9f17vjnsiqfaj9kvdvi146phh53v2zls")))) (properties `((upstream-name . "dimRed"))) (build-system r-build-system) (propagated-inputs @@ -5301,14 +5361,14 @@ methods.") (define-public r-timedate (package (name "r-timedate") - (version "3043.102") + (version "4021.104") (source (origin (method url-fetch) (uri (cran-uri "timeDate" version)) (sha256 (base32 - "0wvl5pq261rvbgly7vilk3x3m9xk3ly6il1i5scwdf6srl1vlz1p")))) + "03ncgbc9igiwl4s8pa94nj2v7aw3gw8ay51pwvv9gkv2f7l7dvh3")))) (properties `((upstream-name . "timeDate"))) (build-system r-build-system) (home-page "https://www.rmetrics.org") @@ -5371,14 +5431,14 @@ the RMariaDB package.") (define-public r-rpostgresql (package (name "r-rpostgresql") - (version "0.7-3") + (version "0.7-4") (source (origin (method url-fetch) (uri (cran-uri "RPostgreSQL" version)) (sha256 (base32 - "1fbixmnjp1kh6yiv8zhg8zi5ryvdf5j2jxv4agq5gcxf541s3g5x")))) + "1ijnsly8wgy6cfib4xvdaz2g9hk1gzg7q52r37zkvc7jjh0gdbdn")))) (properties `((upstream-name . "RPostgreSQL"))) (build-system r-build-system) (inputs @@ -5417,14 +5477,14 @@ Optimization problems by using the simplex algorithm.") (define-public r-geometry (package (name "r-geometry") - (version "0.4.6") + (version "0.4.6.1") (source (origin (method url-fetch) (uri (cran-uri "geometry" version)) (sha256 (base32 - "1n7m0djqlhrv01l98r76grkki6cv4k4q2z6c7fksqgq4r2l6a14i")))) + "0wplszaxi6phxffp3zww5alwnfbh9521qi43h65w057lrm1pmj2j")))) (build-system r-build-system) (propagated-inputs (list r-magic r-linprog r-lpsolve r-rcpp r-rcppprogress)) @@ -5586,14 +5646,14 @@ created using basic graphics.") (define-public r-generics (package (name "r-generics") - (version "0.1.2") + (version "0.1.3") (source (origin (method url-fetch) (uri (cran-uri "generics" version)) (sha256 (base32 - "162q9hdsnfcwjj255ahbi6v9vnyynvda7gb75p721y28j5xb7sk3")))) + "0lyhhwik0w7m5h3fbwl2f52gc1v2g6g6h6sc47sa9f58pxin213m")))) (build-system r-build-system) (home-page "https://github.com/r-lib/generics") (synopsis "Common S3 generics not provided by base R methods") @@ -5645,17 +5705,18 @@ provides a one-row summary of model-level statistics.") (define-public r-recipes (package (name "r-recipes") - (version "0.2.0") + (version "1.0.1") (source (origin (method url-fetch) (uri (cran-uri "recipes" version)) (sha256 (base32 - "1950rvva19ms6xy9d3jx94gzy589qprk115zjjd0ib4qxgip601x")))) + "1jav29biq13xf0vg9kj3k6khqb71hqak26kxxi0vy29l849f4fly")))) (build-system r-build-system) (propagated-inputs - (list r-dplyr + (list r-cli + r-dplyr r-ellipsis r-generics r-glue @@ -5738,13 +5799,13 @@ from the data points.") (define-public r-coro (package (name "r-coro") - (version "1.0.2") + (version "1.0.3") (source (origin (method url-fetch) (uri (cran-uri "coro" version)) (sha256 - (base32 "14irld29dipgfd34y0k351daqg9vqpnpdx8m3pxmqr1aiyj5f5cv")))) + (base32 "0wvxdpdh3xrskz5s5wfkva856x849knx1jigbf0ff6s6n6qjjxsf")))) (properties `((upstream-name . "coro"))) (build-system r-build-system) (propagated-inputs (list r-rlang)) @@ -6089,14 +6150,14 @@ acceptance regions, log-ratio plots and Q-Q plots.") (define-public r-sm (package (name "r-sm") - (version "2.2-5.7") + (version "2.2-5.7.1") (source (origin (method url-fetch) (uri (cran-uri "sm" version)) (sha256 (base32 - "03z8igsjqr32x407asxvkrbayvm6yhv9xyfs0n8fkmv8zk5a41r6")))) + "0mql7rlm8wkdwmx1lv7pscdk9ibvsdpfdv8bpaz1hv2gn4pc637a")))) (build-system r-build-system) (native-inputs (list gfortran)) (home-page "http://www.stats.gla.ac.uk/~adrian/sm/") @@ -6277,13 +6338,13 @@ Analysis with R\" by Michael Friendly and David Meyer (2015).") (define-public r-vcfr (package (name "r-vcfr") - (version "1.12.0") + (version "1.13.0") (source (origin (method url-fetch) (uri (cran-uri "vcfR" version)) (sha256 (base32 - "0lhxb3ac4fafwik9q3cds46svzf0hyca8k54chw3dpk50c0zz1yx")))) + "1g4y11vpr3wrvf5prj7y33c2bah6rn4xfb4a1y7n7niafd2yhg3l")))) (build-system r-build-system) (native-inputs (list r-knitr)) @@ -6315,14 +6376,14 @@ VCF data and familiar R software.") (define-public r-ica (package (name "r-ica") - (version "1.0-2") + (version "1.0-3") (source (origin (method url-fetch) (uri (cran-uri "ica" version)) (sha256 (base32 - "0ya1nph1zwhad0bfz4yxs27kl45yk1dhnphdlrq34p8pqrpmj8g7")))) + "0rdqd3kz2cv3xvf6yz55bwhsg3k7j90d450i3azs2xkbn4q3aka7")))) (build-system r-build-system) (home-page "https://cran.r-project.org/web/packages/ica/") (synopsis "Independent component analysis") @@ -6507,13 +6568,13 @@ constants, and control debugging of packages via environment variables.") (define-public r-processx (package (name "r-processx") - (version "3.6.1") + (version "3.7.0") (source (origin (method url-fetch) (uri (cran-uri "processx" version)) (sha256 - (base32 "1xgjj37s304vdwp2a02rl999xl6dw7iw0ib9jyfpjrqyc1lmfw47")))) + (base32 "1lsyspd3jak6g625sna5jdqrg5fw02qgdfiz0hsyqlzw6m0qssny")))) (build-system r-build-system) (propagated-inputs (list r-ps r-r6)) @@ -6532,14 +6593,14 @@ timeout. It can also poll several processes at once.") (define-public r-tsp (package (name "r-tsp") - (version "1.2-0") + (version "1.2-1") (source (origin (method url-fetch) (uri (cran-uri "TSP" version)) (sha256 (base32 - "022k0972kcxb0w6qhx09l9cif8fmpkpvwddvgxiy60bx343ywzia")))) + "1pa6pb4qrh2iybpjzjiny6hshj0shjdm0pxqnidcrg5hyfzzxd9b")))) (properties `((upstream-name . "TSP"))) (build-system r-build-system) (propagated-inputs (list r-foreach)) @@ -6617,14 +6678,14 @@ Markdown documents.") (define-public r-seriation (package (name "r-seriation") - (version "1.3.5") + (version "1.3.6") (source (origin (method url-fetch) (uri (cran-uri "seriation" version)) (sha256 (base32 - "0dlj0mqpg585m6i7yn0h878i8ag6pyqph98xkk42i2nvghpy01gr")))) + "1i0bbfxbvzy2lwprliqrn97ww8lqr2s9klg0g3qqjyr8cdxs5fyc")))) (build-system r-build-system) (propagated-inputs (list r-cluster @@ -6772,19 +6833,17 @@ estimated from a given sample.") (define-public r-pillar (package (name "r-pillar") - (version "1.7.0") + (version "1.8.0") (source (origin (method url-fetch) (uri (cran-uri "pillar" version)) (sha256 (base32 - "1fqk18vc9ashf12gdqkdi6n1nj5lh324vwhgiib3b2fcb2bghhbq")))) + "0vxkg451s5kwkg0m8d9dnr8gl5s0pgi8mxcm39ry5vgdj8v47ijj")))) (build-system r-build-system) (propagated-inputs (list r-cli - r-crayon - r-ellipsis r-fansi r-glue r-lifecycle @@ -7326,14 +7385,14 @@ provides some missing S-PLUS functionality in R.") (define-public r-ifultools (package (name "r-ifultools") - (version "2.0-23") + (version "2.0-26") (source (origin (method url-fetch) (uri (cran-uri "ifultools" version)) (sha256 (base32 - "16a7rbvlym3bnfm93ikr5kl0l86ppk0s41fva6idvcx765g3fqkk")))) + "1lkmzrh65j6vdb8523axxk9gig5q4zxy08wiqsp16w482d2q2sl1")))) (build-system r-build-system) (arguments (list @@ -7472,14 +7531,14 @@ University Press, 2000.") (define-public r-tsa (package (name "r-tsa") - (version "1.3") + (version "1.3.1") (source (origin (method url-fetch) (uri (cran-uri "TSA" version)) (sha256 (base32 - "1bv5q609lhmrcxnjnvcj497fbjlv89zwa8q918hw4iki5nkvwwdb")))) + "14g58s2w7wma1fgcg3b51267b3676zrv0w8v4hpypxygz023d9bx")))) (properties `((upstream-name . "TSA"))) (build-system r-build-system) (propagated-inputs @@ -7990,14 +8049,14 @@ systems.") (define-public r-radiant-data (package (name "r-radiant-data") - (version "1.4.2") + (version "1.4.4") (source (origin (method url-fetch) (uri (cran-uri "radiant.data" version)) (sha256 (base32 - "0c5c99q13pwv6k0b07x3r2bxmh0h2w15h02xb1pincgs61qwi15k")) + "1lj8zz9zg7kys9rkjxn9p5z6l944dk2bx6idlxal59yhy4ql2i4p")) (modules '((guix build utils))) (snippet '(begin @@ -8009,6 +8068,7 @@ systems.") (propagated-inputs (list r-base64enc r-broom + r-bslib r-car r-curl r-dplyr @@ -8024,6 +8084,7 @@ systems.") r-mass r-patchwork r-plotly + r-png r-psych r-randomizr r-readr @@ -8732,12 +8793,12 @@ compression with the LZ4 and ZSTD compressors.") (define-public r-snowfall (package (name "r-snowfall") - (version "1.84-6.1") + (version "1.84-6.2") (source (origin (method url-fetch) (uri (cran-uri "snowfall" version)) (sha256 - (base32 "13941rlw1jsdjsndp1plzj1cq5aqravizkrqn6l25r9im7rnsi2w")))) + (base32 "0frmasv04wd47h04zbwaryhiyxllarf3ggpa39p5qicjp6r7lilv")))) (build-system r-build-system) (propagated-inputs (list r-snow)) @@ -9768,14 +9829,14 @@ implemented in bibutils.") (define-public r-rdpack (package (name "r-rdpack") - (version "2.3.1") + (version "2.4") (source (origin (method url-fetch) (uri (cran-uri "Rdpack" version)) (sha256 (base32 - "12j45n4srs987s9mqvp3524cviqbl2pnpx7yw8agac9ynnfmwgmm")))) + "109mylzmlncq5a09ayy4g2g0frj1k843lj8j78gvmz1h5g8sslkn")))) (properties `((upstream-name . "Rdpack"))) (build-system r-build-system) (propagated-inputs @@ -9920,14 +9981,14 @@ or missing responses.") (define-public r-acdm (package (name "r-acdm") - (version "1.0.4") + (version "1.0.4.1") (source (origin (method url-fetch) (uri (cran-uri "ACDm" version)) (sha256 (base32 - "0b4f02ga5ra66mbrm79g0bnlzmii82rks9kmxixxqgf18yhlyjil")))) + "129ykw0j8z30mr4c01qzx6qy6h4bl87zxvmps0vkh8cqb7akninq")))) (properties `((upstream-name . "ACDm"))) (build-system r-build-system) (propagated-inputs @@ -10010,14 +10071,14 @@ other add-on packages.") (define-public r-insight (package (name "r-insight") - (version "0.17.1") + (version "0.18.0") (source (origin (method url-fetch) (uri (cran-uri "insight" version)) (sha256 (base32 - "0dffrsimgijdqsgvr9cad4g4w97d5ssjl3l0fm5ssly9l115ag35")))) + "09gpkac882hqw84rk66h5dm94ljk08ydz13wz9fbjdxaffgw5ba1")))) (build-system r-build-system) (native-inputs (list r-knitr)) @@ -10295,14 +10356,14 @@ matches version and feature constraints.") (define-public r-argparse (package (name "r-argparse") - (version "2.1.5") + (version "2.1.6") (source (origin (method url-fetch) (uri (cran-uri "argparse" version)) (sha256 (base32 - "13b5halfxc7nr57vkz3qmkkcpw1hr4xdk1mjh2cq8cvpnjz15qc3")))) + "14p57nm0w3siqd473snzhpmnvsgl72x92pdcd64vhy2qg6nzmmra")))) (build-system r-build-system) (inputs (list python)) (propagated-inputs @@ -10807,6 +10868,29 @@ supported classes are those defined in packages @code{network} and @code{igraph}.") (license license:gpl3))) +(define-public r-interp + (package + (name "r-interp") + (version "1.1-3") + (source (origin + (method url-fetch) + (uri (cran-uri "interp" version)) + (sha256 + (base32 + "0gzsnlg8f7knb100n6vv6307c3v2jd8f9qzrq62jkc6g71mn0kmp")))) + (properties `((upstream-name . "interp"))) + (build-system r-build-system) + (propagated-inputs (list r-deldir r-rcpp r-rcppeigen)) + (native-inputs (list gfortran)) + (home-page "https://cran.r-project.org/package=interp") + (synopsis "Interpolation methods") + (description + "Bivariate data interpolation on regular and irregular grids, either +linear or using splines are the main part of this package. It is intended to +provide replacement functions for the ACM licensed @code{akima::interp} and +@code{tripack::tri.mesh} functions.") + (license license:gpl2+))) + (define-public r-abcoptim (package (name "r-abcoptim") @@ -10980,14 +11064,14 @@ repeated measures data, respectively.") (define-public r-gam (package (name "r-gam") - (version "1.20.1") + (version "1.20.2") (source (origin (method url-fetch) (uri (cran-uri "gam" version)) (sha256 (base32 - "1bbxiqfgi7jc9vw1hspw5q41d69nlw2v6k91zqlvmam5pvxcd1sp")))) + "1ndgnaq5fk1w6l6z93w5gd22887yxkykrchbdbx366qmz8v8wcyg")))) (properties `((upstream-name . "gam"))) (build-system r-build-system) (propagated-inputs @@ -11680,13 +11764,13 @@ emission distributions.") (define-public r-nleqslv (package (name "r-nleqslv") - (version "3.3.2") + (version "3.3.3") (source (origin (method url-fetch) (uri (cran-uri "nleqslv" version)) (sha256 - (base32 "1v9znvncyigw9r25wx2ma0b7ib179b488dl0qsrhp5zrcz7mcjgm")))) + (base32 "0cy65bqkmnnr8v0x1cag84caxwdxyr0yw4w443apxzfxjp7dyiif")))) (build-system r-build-system) (native-inputs (list gfortran)) (home-page "https://cran.r-project.org/web/packages/nleqslv/") @@ -11699,6 +11783,31 @@ supplied Jacobian, for specifying a banded numerical Jacobian and for allowing a singular or ill-conditioned Jacobian.") (license license:gpl2+))) +(define-public r-phyclust + (package + (name "r-phyclust") + (version "0.1-30") + (source (origin + (method url-fetch) + (uri (cran-uri "phyclust" version)) + (sha256 + (base32 + "0fy9q95vmlm9idpax7alhpfwn30gflnc9md72g91jypyxkx5nr7p")))) + (properties `((upstream-name . "phyclust"))) + (build-system r-build-system) + (propagated-inputs (list r-ape)) + (home-page "https://snoweye.github.io/phyclust/") + (synopsis "Studying phyloclustering and exploring DNA sequence data") + (description + "@dfn{Phylogenetic clustering} (phyloclustering) is an evolutionary continuous +time Markov Chain model-based approach to identify population structure from +molecular data without assuming linkage equilibrium. The package @code{phyclust} +provides a convenient implementation of phyloclustering for DNA and SNP data, +capable of clustering individuals into subpopulations and identifying molecular +sequences representative of those subpopulations. It is designed in @code{C} for +performance and interfaced with @code{R} for visualization.") + (license license:gpl2+))) + (define-public r-physicalactivity (package (name "r-physicalactivity") @@ -12261,14 +12370,14 @@ packages maintained by Torsten Hothorn.") (define-public r-multcomp (package (name "r-multcomp") - (version "1.4-19") + (version "1.4-20") (source (origin (method url-fetch) (uri (cran-uri "multcomp" version)) (sha256 (base32 - "0mz5wdqrqpp2gqijfpp9rgfbq8yvxki4is8fbbc4qwdwryqp6d7h")))) + "1z1cqklahnp4qi48r335xlqvw7h7xbjrlpb4pjky9gc987xf92rj")))) (build-system r-build-system) (propagated-inputs (list r-codetools r-mvtnorm r-sandwich r-survival r-th-data)) @@ -12306,14 +12415,14 @@ the differences were not significantly different.") (define-public r-emmeans (package (name "r-emmeans") - (version "1.7.5") + (version "1.8.0") (source (origin (method url-fetch) (uri (cran-uri "emmeans" version)) (sha256 (base32 - "04zy4fb5v3l5zi74bgch8l7mzf2zg16w303k6kp7hwqjlfzh6zms")))) + "0xdvbjcywmwk6n8xbp55n92lmqz7wbc938gmv7lbg96hkf9kc993")))) (build-system r-build-system) (propagated-inputs (list r-estimability r-mvtnorm r-numderiv r-xtable)) @@ -12505,14 +12614,14 @@ models.") (define-public r-glmmtmb (package (name "r-glmmtmb") - (version "1.1.3") + (version "1.1.4") (source (origin (method url-fetch) (uri (cran-uri "glmmTMB" version)) (sha256 (base32 - "0xdjc3gx0cj098rrjzlsy9cccxzfvn029xh4ycpya4xjhxsykldr")))) + "1ldly6qn8iwqr41ndqlwsdz4v2n36giavsmx33vybn9g7r2fq4m7")))) (properties `((upstream-name . "glmmTMB"))) (build-system r-build-system) (propagated-inputs @@ -12591,14 +12700,14 @@ effects models and Bayesian models.") (define-public r-ggeffects (package (name "r-ggeffects") - (version "1.1.2") + (version "1.1.3") (source (origin (method url-fetch) (uri (cran-uri "ggeffects" version)) (sha256 (base32 - "01yyfw7fkbxrp0gpwni5y8m4w9l3xckwc3crnvy1fqs1d6gwx3xx")))) + "1h60s10b1b5ciqg125mfnhq7nf2paq9svs2lfgwpwdvs4f8l4aq7")))) (build-system r-build-system) (propagated-inputs (list r-insight r-mass r-sjlabelled)) @@ -12645,13 +12754,13 @@ conversion of indices such as Cohen's d, r, odds, etc.") (define-public r-sjplot (package (name "r-sjplot") - (version "2.8.10") + (version "2.8.11") (source (origin (method url-fetch) (uri (cran-uri "sjPlot" version)) (sha256 - (base32 "1rnwhh271xj8xgvvlpqw9ain56mfz37fvl7f6jq9nzx9jxx95bjd")))) + (base32 "05iimcf1if1cx9bmsjb6f5gcq58hjiw10vx7kqd4nqnyhzcvy8yr")))) (properties `((upstream-name . "sjPlot"))) (build-system r-build-system) (propagated-inputs @@ -12874,14 +12983,14 @@ user credentials.") (define-public r-gert (package (name "r-gert") - (version "1.6.0") + (version "1.7.0") (source (origin (method url-fetch) (uri (cran-uri "gert" version)) (sha256 (base32 - "0r19vi77yyjw5gbhgjibdysjlszlw2095v14f6sv675zpbp0li4c")))) + "1pdqmnlrpbjkqwf9ns2232d3cgyqjkywyd2s8sqinaapnlh87y0x")))) (properties `((upstream-name . "gert"))) (build-system r-build-system) (inputs @@ -13459,6 +13568,38 @@ regressions). NOTE: Weighted partial correlation calculations pulled to address a bug.") (license license:gpl2+))) +(define-public r-rcppalgos + (package + (name "r-rcppalgos") + (version "2.5.3") + (source (origin + (method url-fetch) + (uri (cran-uri "RcppAlgos" version)) + (sha256 + (base32 + "1ndibdf3k02bpcgackzviczramzkay9idn071nix3dhs5miq1ai8")))) + (properties `((upstream-name . "RcppAlgos"))) + (build-system r-build-system) + (inputs (list gmp)) + (propagated-inputs (list r-cpp11 r-gmp)) + (native-inputs (list r-knitr)) + (home-page "https://github.com/jwood000/RcppAlgos") + (synopsis + "High performance tools for combinatorics and computational mathematics") + (description + "This package provides optimized functions and flexible combinatorial +iterators implemented in C++ for solving problems in combinatorics and +computational mathematics. It utilizes the @code{RMatrix} class from +@code{RcppParallel} for thread safety. There are combination/permutation +functions with constraint parameters that allow for generation of all results +of a vector meeting specific criteria. It is capable of generating specific +combinations/permutations which sets up nicely for parallelization as well as +random sampling. Gmp support permits exploration where the total number of +results is large. Additionally, there are several high performance number +theoretic functions that are useful for problems common in computational +mathematics.") + (license license:gpl2+))) + (define-public r-rcppannoy (package (name "r-rcppannoy") @@ -13487,14 +13628,14 @@ This package provides an R interface.") (define-public r-rcpphnsw (package (name "r-rcpphnsw") - (version "0.3.0") + (version "0.4.1") (source (origin (method url-fetch) (uri (cran-uri "RcppHNSW" version)) (sha256 (base32 - "01z0plf1i6dyibw4ica8shmijyk1grpqb886hcga72z2cpm4xsx0")))) + "0x3w14cz6hkrl8hi6217j0dl65l3yphbzka1dmsvgp3p9waq402g")))) (properties `((upstream-name . "RcppHNSW"))) (build-system r-build-system) (propagated-inputs (list r-rcpp)) @@ -13579,14 +13720,14 @@ Bioconductor packages.") (define-public r-rgl (package (name "r-rgl") - (version "0.109.2") + (version "0.109.6") (source (origin (method url-fetch) (uri (cran-uri "rgl" version)) (sha256 (base32 - "15rckpi2vzjc45glqk1mibxw1vja9y08hj9id2qd1si2bb708x8i")))) + "1jl89v2gwk1d4q3vn7kx8x7abjbgiisfiyrs4d40qixr6iil8hrz")))) (build-system r-build-system) (native-inputs (list pkg-config @@ -13814,6 +13955,30 @@ circular variables).") for evolution along a phylogenetic tree.") (license license:gpl2+))) +(define-public r-fmri + (package + (name "r-fmri") + (version "1.9.6") + (source (origin + (method url-fetch) + (uri (cran-uri "fmri" version)) + (sha256 + (base32 + "1wh77xwpm8f9d9vky3r7vfmkik3hls008ifk8hkm2rq6i06jj53n")))) + (properties `((upstream-name . "fmri"))) + (build-system r-build-system) + (propagated-inputs (list r-aws r-metafor r-nlme)) + (native-inputs (list gfortran)) + (home-page "http://www.wias-berlin.de/software/imaging/") + (synopsis "Analysis of fMRI experiments") + (description + "This package contains R-functions to perform an fMRI analysis as +described in Polzehl and Tabelow (2019) <DOI:10.1007/978-3-030-29184-6>, +Tabelow et al. (2006) <DOI:10.1016/j.neuroimage.2006.06.029>, Polzehl et +al. (2010) <DOI:10.1016/j.neuroimage.2010.04.241>, Tabelow and Polzehl (2011) +<DOI:10.18637/jss.v044.i11>.") + (license license:gpl2+))) + (define-public r-fmsb (package (name "r-fmsb") @@ -13898,6 +14063,31 @@ Anderson-Darling Distribution\".") ;; Any version of the GPL. (license license:gpl3+))) +(define-public r-adimpro + (package + (name "r-adimpro") + (version "0.9.3") + (source (origin + (method url-fetch) + (uri (cran-uri "adimpro" version)) + (sha256 + (base32 + "0njw38vcdm02sni193nj10mpv7hiklpamrkjlz5bnhjxx9mvf4cl")))) + (properties `((upstream-name . "adimpro"))) + (build-system r-build-system) + (propagated-inputs + (list r-awsmethods + imagemagick)) + (native-inputs (list gfortran)) + (home-page "https://www.wias-berlin.de/software/imaging/") + (synopsis "Adaptive smoothing of digital images") + (description + "This package implements tools for manipulation of digital images and the +Propagation Separation approach by Polzehl and Spokoiny (2006) +<DOI:10.1007/s00440-005-0464-1> for smoothing digital images, see Polzehl and +Tabelow (2007) <DOI:10.18637/jss.v019.i01>.") + (license license:gpl2+))) + (define-public r-admisc (package (name "r-admisc") @@ -13923,6 +14113,47 @@ others, a highly flexible recoding routine and a more flexible alternative to the base function @code{with()}.") (license license:gpl3+))) +(define-public r-oro-nifti + (package + (name "r-oro-nifti") + (version "0.11.4") + (source (origin + (method url-fetch) + (uri (cran-uri "oro.nifti" version)) + (sha256 + (base32 + "01mn90qxb7i15zr83xrl2cn4akayfzpm83r5x71zczz3qb9gbr7g")))) + (properties `((upstream-name . "oro.nifti"))) + (build-system r-build-system) + (propagated-inputs (list r-abind r-bitops r-rnifti)) + (home-page "https://rigorousanalytics.blogspot.com") + (synopsis "Vizualization of medical imaging data") + (description + "This package provides functions for the input/output and visualization +of medical imaging data that follow either the ANALYZE, NIfTI or AFNI formats. +This package is part of the Rigorous Analytics bundle.") + (license license:bsd-3))) + +(define-public r-mritc + (package + (name "r-mritc") + (version "0.5-2") + (source (origin + (method url-fetch) + (uri (cran-uri "mritc" version)) + (sha256 + (base32 + "07b1b2k1ka43ikj2mhwnazw3ig7w10bf759fimxpksvk5k6wanx2")))) + (properties `((upstream-name . "mritc"))) + (build-system r-build-system) + (propagated-inputs (list r-lattice r-misc3d r-oro-nifti)) + (home-page "https://cran.r-project.org/package=mritc") + (synopsis "MRI tissue classification") + (description "This package provides various methods for MRI tissue +classification.") + ;; Any version of the GPL. + (license license:gpl3+))) + (define-public r-sodium (package (name "r-sodium") @@ -14327,6 +14558,33 @@ while other are highly specific for the special data format used for @dfn{quantitative language comparison} (QLC).") (license license:gpl3))) +(define-public r-qmri + (package + (name "r-qmri") + (version "1.2") + (source (origin + (method url-fetch) + (uri (cran-uri "qMRI" version)) + (sha256 + (base32 + "10x59g8awxjib5j5mc1yd5wsibk3z6ki6zifxsg8azl0zblxbscf")))) + (properties `((upstream-name . "qMRI"))) + (build-system r-build-system) + (propagated-inputs (list r-adimpro r-aws r-awsmethods r-oro-nifti + r-stringr)) + (native-inputs (list gfortran r-knitr)) + (home-page "http://www.wias-berlin.de/research/ats/imaging/") + (synopsis "Methods for quantitative magnetic resonance imaging (qMRI)") + (description + "This package provides implementation of methods for estimation of +quantitative maps from @dfn{Multi-Parameter Mapping} (MPM) acquisitions +including adaptive smoothing methods in the framework of the ESTATICS model. +The smoothing method is described in Mohammadi et +al. (2017). <doi:10.20347/WIAS.PREPRINT.2432>. Usage of the package is also +described in Polzehl and Tabelow (2019), Magnetic Resonance Brain Imaging, +Chapter 6, Springer, Use R! Series. <doi:10.1007/978-3-030-29184-6_6>.") + (license license:gpl2+))) + (define-public r-ddrtree (package (name "r-ddrtree") @@ -14567,6 +14825,27 @@ library which allows parsing of NEXUS, Newick and other phylogenetic tree methods, incorporating one or more trees and trait data.") (license license:gpl2+))) +(define-public r-phylotools + (package + (name "r-phylotools") + (version "0.2.2") + (source (origin + (method url-fetch) + (uri (cran-uri "phylotools" version)) + (sha256 + (base32 + "1dhk1ncp5zi4zl1xfnjz64v983dm7bq7iimfjin80j0bdcpps44w")))) + (properties `((upstream-name . "phylotools"))) + (build-system r-build-system) + (propagated-inputs (list r-ape)) + (home-page "https://github.com/helixcn/phylotools") + (synopsis "Phylogenetic tools for eco-phylogenetics") + (description + "This package provides a collection of tools for building RAxML +supermatrix using PHYLIP or aligned FASTA files. These functions will be +useful for building large phylogenies using multiple markers.") + (license license:gpl2))) + (define-public r-rnexml (package (name "r-rnexml") @@ -14605,14 +14884,14 @@ and compatibility with @code{ape} objects.") (define-public r-rnifti (package (name "r-rnifti") - (version "1.4.0") + (version "1.4.1") (source (origin (method url-fetch) (uri (cran-uri "RNifti" version)) (sha256 (base32 - "0kkj9dby85iwnlqb7zwrh1xidlvqip7i1mbgckb5qg4b0a3zgibc")))) + "058jzhw91wd4hb9l06mn0ihf1yp2fapz1fyb32w9bjwxq7qxvii2")))) (properties `((upstream-name . "RNifti"))) (build-system r-build-system) (inputs (list zlib)) @@ -15527,13 +15806,13 @@ This makes it a convenient and fast interface to C/C++ and Fortran code.") (define-public r-spam (package (name "r-spam") - (version "2.8-0") + (version "2.9-1") (source (origin (method url-fetch) (uri (cran-uri "spam" version)) (sha256 - (base32 "1ann2a2ifr3z983fcg1c0pkgmbxz6a0ym5q1dmq1r382bd1pg0fr")))) + (base32 "1nvx965vxzs697k9m2l40a15bykflksn9bwa4py1p2wqg6922bn3")))) (build-system r-build-system) (propagated-inputs (list r-dotcall64)) @@ -15557,13 +15836,13 @@ Differences with other sparse matrix packages are: (define-public r-fields (package (name "r-fields") - (version "13.3") + (version "14.0") (source (origin (method url-fetch) (uri (cran-uri "fields" version)) (sha256 - (base32 "1hs4k5a9hh0r5fsrnpnvs6wvf78xpjzj8a2j6643dsz73a5q6ln6")))) + (base32 "0rjg2yx52f5s1fhg6jbk9lfv92qmjqwd6bwpz9rx1fkml9vy8zch")))) (build-system r-build-system) (propagated-inputs (list r-maps r-spam r-viridis)) @@ -15782,6 +16061,71 @@ putative directions).") library.") (license license:artistic2.0))) +(define-public r-profvis + (package + (name "r-profvis") + (version "0.3.7") + (source (origin + (method url-fetch) + (uri (cran-uri "profvis" version)) + (sha256 + (base32 + "1f86m426pcf90l29hf4hkirzf8f38dihk52bxbdq2gvrrdili5s3")) + (modules '((guix build utils))) + (snippet + '(with-directory-excursion "inst/htmlwidgets/lib" + (for-each delete-file + (list "highlight/highlight.js" ;from rmarkdown + "jquery/jquery.min.js" ;version 1.12.4 + "d3/d3.min.js")))))) ;version 3.5.6 + (properties `((upstream-name . "profvis"))) + (build-system r-build-system) + (arguments + `(#:phases + (modify-phases %standard-phases + (add-after 'unpack 'process-javascript + (lambda* (#:key inputs #:allow-other-keys) + (with-directory-excursion "inst/htmlwidgets/lib/" + (copy-file + (search-input-file + inputs "/site-library/rmarkdown/rmd/h/highlightjs/highlight.js") + "highlight/highlight.js") + (let ((mapping + `((,(assoc-ref inputs "js-jquery") + . "jquery/jquery.min.js") + (,(assoc-ref inputs "js-d3") + . "d3/d3.min.js")))) + (for-each (lambda (source target) + (format #true "Processing ~a --> ~a~%" + source target) + (invoke "esbuild" source "--minify" + (string-append "--outfile=" target))) + (map car mapping) + (map cdr mapping))))))))) + (native-inputs + `(("esbuild" ,esbuild) + ("r-rmarkdown" ,r-rmarkdown) + ("js-d3" + ,(origin + (method url-fetch) + (uri "https://raw.githubusercontent.com/d3/d3/v3.5.6/d3.js") + (sha256 + (base32 + "17qlbwn7vgx335gciq6zp2ib6zg1r9lfa6p1bd9g0ds0xbcsbvgd")))) + ("js-jquery" + ,(origin + (method url-fetch) + (uri "https://code.jquery.com/jquery-1.12.4.js") + (sha256 + (base32 + "0x9mrc1668icvhpwzvgafm8xm11x9lfai9nwr66aw6pjnpwkc3s3")))))) + (propagated-inputs (list r-htmlwidgets r-stringr)) + (home-page "https://rstudio.github.io/profvis/") + (synopsis "Interactive visualizations for profiling R code") + (description "This package provides interactive visualizations for +profiling R code.") + (license license:gpl3))) + (define-public r-protviz (package (name "r-protviz") @@ -16014,14 +16358,14 @@ subsetting.") (define-public r-globals (package (name "r-globals") - (version "0.15.1") + (version "0.16.0") (source (origin (method url-fetch) (uri (cran-uri "globals" version)) (sha256 (base32 - "0svsssf8swzsihng6c8wpmn33lxaj4f5xq975ywlr950svmjfz7f")))) + "0507lxykjz44yws4s4hb99zb3bn6kn6fy8m87lf2dsm431j40gy5")))) (build-system r-build-system) (propagated-inputs (list r-codetools)) @@ -16038,14 +16382,14 @@ them in distributed compute environments.") (define-public r-parallelly (package (name "r-parallelly") - (version "1.32.0") + (version "1.32.1") (source (origin (method url-fetch) (uri (cran-uri "parallelly" version)) (sha256 (base32 - "0yg1hmgkp81ihgwqaynqh0jgki2mkdy78j4fgjmqvc1ig5ga774h")))) + "146a9i999vrflr4g1fph1pgkl4bq0dw102bjw8pp1zy7kbsqbiii")))) (properties `((upstream-name . "parallelly"))) (build-system r-build-system) (home-page "https://github.com/HenrikBengtsson/parallelly") @@ -16066,14 +16410,14 @@ port-forwarding to your local computer.") (define-public r-future (package (name "r-future") - (version "1.26.1") + (version "1.27.0") (source (origin (method url-fetch) (uri (cran-uri "future" version)) (sha256 (base32 - "1mchjdvvwgs8v0iv8z5m6gav3xzvnq11h8qrc7lfnrb2x3d0np53")))) + "1ybhbdw158403n6plipgiwkw710pxpnq3mq8pdx5g8q3jibv93nh")))) (build-system r-build-system) (arguments `(#:phases @@ -16809,14 +17153,14 @@ probabilities from a standard bivariate normal CDF.") (define-public r-lavaan (package (name "r-lavaan") - (version "0.6-11") + (version "0.6-12") (source (origin (method url-fetch) (uri (cran-uri "lavaan" version)) (sha256 (base32 - "026k32paf51lpy6zxm9m81zg9szx14j37dxdip6nba334jw97h9c")))) + "17h79pnww1mihvlp6ap0r6d8wnly9bwszj13l5dkby0284z2fj40")))) (build-system r-build-system) (propagated-inputs (list r-mass r-mnormt r-numderiv r-pbivnorm)) @@ -17296,17 +17640,17 @@ customizable sets, and intervals.") (define-public r-partitions (package (name "r-partitions") - (version "1.10-4") + (version "1.10-7") (source (origin (method url-fetch) (uri (cran-uri "partitions" version)) (sha256 (base32 - "1ik7cj2yfybx4v847nvnjrbkd0k66pfqqv6lkygfnlrldi0r205i")))) + "1kxiy1wl7dr39kyfg2y9hd67s32knd83r2jsb7j9p3vg8iqq7yqb")))) (build-system r-build-system) (propagated-inputs - (list r-gmp r-mathjaxr r-polynom r-sets)) + (list r-gmp r-mathjaxr r-polynom r-rdpack r-sets)) (home-page "https://cran.r-project.org/web/packages/partitions") (synopsis "Additive partitions of integers") (description @@ -17627,16 +17971,27 @@ high-performance functions are provided here.") (define-public r-s2 (package (name "r-s2") - (version "1.0.7") + (version "1.1.0") (source (origin (method url-fetch) (uri (cran-uri "s2" version)) (sha256 (base32 - "0gwydn6wdl675ydkcckrci6ylcx30qn8nfhmrp4qx4r9mv3c2410")))) + "05n459rp5b1wk826sq3c5d2z1xwgkpfp8m1jnfshvs4gadlfkap3")))) (properties `((upstream-name . "s2"))) (build-system r-build-system) + (arguments + (list + #:phases + `(modify-phases %standard-phases + ;; We don't want to convert -lssl to -l:libssl.so.1.1; there is only + ;; one libssl.so anyway and the -l:* thing breaks linking. + (add-after 'unpack 'undo-library-versioning + (lambda _ + (substitute* "configure" + (("PKG_LIBS_VERSIONED=.*") + "PKG_LIBS_VERSIONED=\"${PKG_LIBS}\"\n"))))))) (propagated-inputs (list r-rcpp r-wk)) (inputs @@ -17657,14 +18012,14 @@ information about geometries.") (define-public r-sf (package (name "r-sf") - (version "1.0-7") + (version "1.0-8") (source (origin (method url-fetch) (uri (cran-uri "sf" version)) (sha256 (base32 - "0lsl4rh4lbv386hxlsnnwsjb5x1n9d3z0ckjmxakmmrqjjmiywyh")))) + "0cl7m47ar3iw95rpwpmjl23frdbscxa15q39mlzmwswxwy871p1x")))) (build-system r-build-system) (inputs (list gdal geos proj sqlite zlib)) @@ -18166,14 +18521,14 @@ authoring books and technical documents with R Markdown.") (define-public r-optparse (package (name "r-optparse") - (version "1.7.1") + (version "1.7.3") (source (origin (method url-fetch) (uri (cran-uri "optparse" version)) (sha256 (base32 - "1rqz0y4r94y3mwbb9kyz97cjqpnprka96qbncvbnbmgg2d630kij")))) + "1v87db7fm494dwxvdsnl1m2kj84nplq7pkh0g41najhx0npy31v2")))) (build-system r-build-system) (propagated-inputs (list r-getopt)) @@ -18583,14 +18938,14 @@ consists of @code{grid} grobs and viewports that can then be manipulated with (define-public r-farver (package (name "r-farver") - (version "2.1.0") + (version "2.1.1") (source (origin (method url-fetch) (uri (cran-uri "farver" version)) (sha256 (base32 - "1x6ffwxqbrwlylnk995jz2a6nz2y9z59jaq0ncpni7q40w367j75")))) + "1klnr73fhm7n46q85in1v9gi99y6rcdzzg4h4wvnbx23lxndmkqd")))) (build-system r-build-system) (home-page "https://github.com/thomasp85/farver") (synopsis "Vectorized color conversion and comparison") @@ -18722,6 +19077,27 @@ Minkowski Sum of general polygons. There is a function for removing self-intersections from polygon data.") (license license:boost1.0))) +(define-public r-urlchecker + (package + (name "r-urlchecker") + (version "1.0.1") + (source (origin + (method url-fetch) + (uri (cran-uri "urlchecker" version)) + (sha256 + (base32 + "06034lb94krbzawqg5xklwcksvyyzl3qy355f66baj5pw7dms5k2")))) + (properties `((upstream-name . "urlchecker"))) + (build-system r-build-system) + (propagated-inputs (list r-cli r-curl r-xml2)) + (home-page "https://github.com/r-lib/urlchecker") + (synopsis "Run CRAN URL checks from older R versions") + (description + "This package provides the URL checking tools available in R 4.1+ as a +package for earlier versions of R. It also uses concurrent requests so can be +much faster than the serial versions.") + (license license:gpl3))) + (define-public r-urltools (package (name "r-urltools") @@ -18823,14 +19199,14 @@ databases, including ENA, PDB or ChEMBL are also accessible.") (define-public r-ggraph (package (name "r-ggraph") - (version "2.0.5") + (version "2.0.6") (source (origin (method url-fetch) (uri (cran-uri "ggraph" version)) (sha256 (base32 - "0m4n8iw2b9jk8hcy5blg5w59zsqcpsbv27wbw598dvljpafx8sp3")))) + "02nl92vgyp5pc61r14mmmbfhg5nhb6fibjjb3djfag2ahc6wj2kv")))) (build-system r-build-system) (propagated-inputs (list r-digest @@ -19244,14 +19620,14 @@ etc.). Text boxes with automatic word wrap are also supported.") (define-public r-flexdashboard (package (name "r-flexdashboard") - (version "0.5.2") + (version "0.6.0") (source (origin (method url-fetch) (uri (cran-uri "flexdashboard" version)) (sha256 (base32 - "1bh759llp15fxrx2rwvxd8p3w84vjmkid32ism7zg49a127fjib4")) + "0bvw2ca6xxscia4hvq505qvjf6zkgpsqv86f1s78aknzwr9jsikm")) (modules '((guix build utils))) (snippet '(begin @@ -19260,7 +19636,7 @@ etc.). Text boxes with automatic word wrap are also supported.") (delete-file "inst/www/sly/sly.min.js") (delete-file "inst/www/stickytableheaders/jquery.stickytableheaders.min.js") (delete-file "inst/www/prism/prism.js") - #t)))) + (delete-file "inst/www/featherlight/featherlight.min.js"))))) (build-system r-build-system) (arguments `(#:modules ((guix build utils) @@ -19307,14 +19683,16 @@ etc.). Text boxes with automatic word wrap are also supported.") (call-with-output-file target (lambda (port) (dump-port minified port))))) - sources targets)))) - #t))))) + sources targets))))))))) (propagated-inputs - (list r-htmltools + (list r-bslib + r-htmltools r-htmlwidgets r-jsonlite r-knitr r-rmarkdown + r-sass + r-scales r-shiny)) (native-inputs `(("uglifyjs" ,node-uglify-js) @@ -20814,14 +21192,14 @@ emphasize hidden group structures in networks or focus on specific nodes.") (define-public r-terra (package (name "r-terra") - (version "1.5-34") + (version "1.6-7") (source (origin (method url-fetch) (uri (cran-uri "terra" version)) (sha256 (base32 - "075azi23gi1b1jxm3s1f1hpc6in7qz4fp38shq9pflfnzbs8ib9w")))) + "1p67797i9n4cjk1lp4a84h220428nxv940n1kjg1ysl3chrf0w1l")))) (properties `((upstream-name . "terra"))) (build-system r-build-system) (inputs @@ -21094,13 +21472,13 @@ programming problems.") (define-public r-desolve (package (name "r-desolve") - (version "1.32") + (version "1.33") (source (origin (method url-fetch) (uri (cran-uri "deSolve" version)) (sha256 - (base32 "1bfr4w760nr7mjhpmf32z39swr6isnn1665cld2d1pdgx8b0yrvl")))) + (base32 "115nr3j1zp2016qpk9ab6r8n15zygvlihlmc10ilfznf0ng9gpki")))) (properties `((upstream-name . "deSolve"))) (build-system r-build-system) (native-inputs @@ -21123,13 +21501,13 @@ to ODEs by numerical differencing.") (define-public r-pmcmrplus (package (name "r-pmcmrplus") - (version "1.9.4") + (version "1.9.5") (source (origin (method url-fetch) (uri (cran-uri "PMCMRplus" version)) (sha256 - (base32 "16m1pdrzjq9vnx5v7zv56mz9r1205rkw92883cxaqbvdpds6dhqy")))) + (base32 "15xhwq231vgq9q7pk1r4z11wijn4hgdwcly1n9nxxa05w15x9q33")))) (properties `((upstream-name . "PMCMRplus"))) (build-system r-build-system) (inputs (list gmp)) @@ -21246,14 +21624,14 @@ structural data.") (define-public r-bios2cor (package (name "r-bios2cor") - (version "2.2") + (version "2.2.1") (source (origin (method url-fetch) (uri (cran-uri "Bios2cor" version)) (sha256 (base32 - "1wkj9vr33m9jilidil9jpw5rzr3pf7gkimxdvch22ks4bgkx7l1w")))) + "0xj7ab9a463p4a67y0hlv6mfd08xf8didkn2mwrfa7gxjqqvix4z")))) (properties `((upstream-name . "Bios2cor"))) (build-system r-build-system) (propagated-inputs @@ -21805,14 +22183,14 @@ Social Sciences\" by Mark S. Handcock and Martina Morris, Springer-Verlag, (define-public r-accept (package (name "r-accept") - (version "0.9.0") + (version "0.9.1") (source (origin (method url-fetch) (uri (cran-uri "accept" version)) (sha256 (base32 - "13kx8fbnbpasjklgbq2rf4n73j2s8rvy5v77ywqhfzln24937qgh")))) + "0risdxw17jk3d56q40a78slb1rcj93b6kz71hn5hbwr0iih722gr")))) (properties `((upstream-name . "accept"))) (build-system r-build-system) (propagated-inputs @@ -22479,14 +22857,14 @@ the @code{aroma.affymetrix} package.") (define-public r-r-filesets (package (name "r-r-filesets") - (version "2.14.0") + (version "2.15.0") (source (origin (method url-fetch) (uri (cran-uri "R.filesets" version)) (sha256 (base32 - "08xv8b3c81nf54viyr3w912al18483k5gfnjpg7bxbdfk70dfzbh")))) + "14dngx6ffhfvlaixpvlq890nwgil6zyaw8wy3dlcrv001wynzmms")))) (properties `((upstream-name . "R.filesets"))) (build-system r-build-system) (arguments @@ -23227,14 +23605,14 @@ variable observed over time.") (define-public r-fda (package (name "r-fda") - (version "6.0.4") + (version "6.0.5") (source (origin (method url-fetch) (uri (cran-uri "fda" version)) (sha256 (base32 - "0r2a1rsg904gz6vwcw5jrji7a7pspkfcxmnl9dswpglkn2dsans2")))) + "1wdq35acxavarh7qrxxmdpcjc9jcs56mp3p9rbb4qa35ziv5fi0l")))) (properties `((upstream-name . "fda"))) (build-system r-build-system) (propagated-inputs @@ -23459,14 +23837,14 @@ API; see the package vignette for details.") (define-public r-actuar (package (name "r-actuar") - (version "3.2-2") + (version "3.3-0") (source (origin (method url-fetch) (uri (cran-uri "actuar" version)) (sha256 (base32 - "0dhpaivyga0jwvw1csagbx74biy9jfkw4a8sa871579njxl1x7p1")))) + "1qi9y2x93pxxbynwl06rbiasm86vb0jh7sckw1dw3s21rsx1f5c5")))) (properties `((upstream-name . "actuar"))) (build-system r-build-system) (propagated-inputs (list r-expint)) @@ -24354,14 +24732,14 @@ OpenMP.") (define-public r-emplik (package (name "r-emplik") - (version "1.1-1") + (version "1.2") (source (origin (method url-fetch) (uri (cran-uri "emplik" version)) (sha256 (base32 - "1kw8g8j075bsicdvgkjf4870rfv5c30gvmw6qkkaz3ki22x74w77")))) + "039kz7703ri91j2i93dr8ixap7i63sr72id9zp74cm7ws9pd1b27")))) (properties `((upstream-name . "emplik"))) (build-system r-build-system) (propagated-inputs @@ -24613,19 +24991,20 @@ Raftery, Appl.Statistics, 1989); it includes inference and basic methods.") (define-public r-forecast (package (name "r-forecast") - (version "8.16") + (version "8.17.0") (source (origin (method url-fetch) (uri (cran-uri "forecast" version)) (sha256 (base32 - "0zvn44k7npxai8kj0hgxaaqv1hgd8rxicnvj4cg7wfl8ba4yn0cz")))) + "01633q2fg4cl8zg61dvsnrk8nk1iknk9jqk7p7xnkypxjckm7zl9")))) (properties `((upstream-name . "forecast"))) (build-system r-build-system) (propagated-inputs (list r-colorspace r-fracdiff + r-generics r-ggplot2 r-lmtest r-magrittr @@ -24697,14 +25076,14 @@ programming} (OOP) using R Reference Class.") (define-public r-proxyc (package (name "r-proxyc") - (version "0.2.4") + (version "0.3.0") (source (origin (method url-fetch) (uri (cran-uri "proxyC" version)) (sha256 (base32 - "1mcimswrx1cjjm7wsgkzfrgh3jpf4sncwfvdvg2f14fzfzy7afd6")))) + "0n3rjc64b3cbccwjajpzd9gr1frgji6rsylw67xswrr9qxkrm0fd")))) (properties `((upstream-name . "proxyC"))) (build-system r-build-system) (propagated-inputs @@ -24811,14 +25190,14 @@ Norwegian, Portuguese, Romanian, Russian, Spanish, Swedish and Turkish.") (define-public r-quanteda (package (name "r-quanteda") - (version "3.2.1") + (version "3.2.2") (source (origin (method url-fetch) (uri (cran-uri "quanteda" version)) (sha256 (base32 - "102wlx6481fskgdr5wv467n29f666q0qg9kjm0ivqfg9xsbvza12")))) + "0qb5yl2bxh6mq4xnjviqv8hfy9fxnx4hmxf06icwldpgx15afa31")))) (properties `((upstream-name . "quanteda"))) (build-system r-build-system) (propagated-inputs @@ -25033,13 +25412,13 @@ actuarial models such as pension mathematics.") (define-public r-matrixextra (package (name "r-matrixextra") - (version "0.1.10") + (version "0.1.11") (source (origin (method url-fetch) (uri (cran-uri "MatrixExtra" version)) (sha256 - (base32 "00f6sgw6p2709gs3df68yr59nvsr429pk9xql71id3kachjzh618")))) + (base32 "0d32b8l28ds7162rgbwbg9g206hds1zzv1mqq7aa9m6f9gg8x3am")))) (properties `((upstream-name . "MatrixExtra"))) (build-system r-build-system) (propagated-inputs @@ -25275,14 +25654,14 @@ importation and recoding.") (define-public r-rockchalk (package (name "r-rockchalk") - (version "1.8.152") + (version "1.8.157") (source (origin (method url-fetch) (uri (cran-uri "rockchalk" version)) (sha256 (base32 - "1d15jlgcy35pvaicaddd4zrhwm5ajb9yc3jk6dyxm99gc5wcn6h3")))) + "13g2rdnxazqfgy653d7vj6w79b2vgnd7bbz0sqn9k4qiig59jh41")))) (properties `((upstream-name . "rockchalk"))) (build-system r-build-system) (propagated-inputs @@ -25322,14 +25701,14 @@ output in R.") (define-public r-bdgraph (package (name "r-bdgraph") - (version "2.67") + (version "2.68") (source (origin (method url-fetch) (uri (cran-uri "BDgraph" version)) (sha256 (base32 - "0s2j4462zlgyjnqvvvxg4lynhmwwnjaw1cr1chzmagfvaj94qhhz")))) + "1mixzkk8shcbyrxydhchq483j2jh2icgmdshmrl79a8vsnz9mmrm")))) (properties `((upstream-name . "BDgraph"))) (build-system r-build-system) (propagated-inputs @@ -25628,14 +26007,14 @@ and reproducible way.") (define-public r-rsconnect (package (name "r-rsconnect") - (version "0.8.26") + (version "0.8.27") (source (origin (method url-fetch) (uri (cran-uri "rsconnect" version)) (sha256 (base32 - "1vazdgpha7545h4riz11njbl8azg38i1y1a5nfckfx03v2zapbzs")))) + "170niwxcmyvad7qw8k115i5a48x3wiidcd82x9anikf7bxhdai0a")))) (properties `((upstream-name . "rsconnect"))) (build-system r-build-system) (propagated-inputs @@ -28482,21 +28861,21 @@ model.") (define-public r-igraph (package (name "r-igraph") - (version "1.3.2") + (version "1.3.4") (source (origin (method url-fetch) (uri (cran-uri "igraph" version)) (sha256 (base32 - "0863gr9k7rvjrm7gz4l35q827jh8802m1q6f51ficgi21qc6cl0g")))) + "1kyic5xmwgw5lm30rsvsf1x3m0yxysdlrnw63xn4fh8j4vcc66ms")))) (build-system r-build-system) (native-inputs (list gfortran)) (inputs (list gmp glpk libxml2 zlib)) (propagated-inputs - (list r-magrittr r-matrix r-pkgconfig)) + (list r-magrittr r-matrix r-pkgconfig r-rlang)) (home-page "https://igraph.org") (synopsis "Network analysis and visualization") (description @@ -28509,14 +28888,14 @@ more.") (define-public r-workflows (package (name "r-workflows") - (version "0.2.6") + (version "1.0.0") (source (origin (method url-fetch) (uri (cran-uri "workflows" version)) (sha256 (base32 - "0xhc1j25fjipw8hvcpdbvfm640kp0flwvifj5f7g4n6b3wb8cm6a")))) + "0bsizgqin5cya0xibs1nqzadrrxcph8n4bh5vlcfbqqzzkv7cx1b")))) (properties `((upstream-name . "workflows"))) (build-system r-build-system) (propagated-inputs @@ -28730,14 +29109,14 @@ pipeline friendly so that data processing with lists can be chained.") (define-public r-rsample (package (name "r-rsample") - (version "1.0.0") + (version "1.1.0") (source (origin (method url-fetch) (uri (cran-uri "rsample" version)) (sha256 (base32 - "0n3pzjxdb6s0cbpalhi1sjba6ifrvjjb448dczvryrqjk7pqvby5")))) + "1iy61riwjch9z4m6k7whsrkl80sk9sww5lf1np4iq4vdfq6w01jb")))) (properties `((upstream-name . "rsample"))) (build-system r-build-system) (propagated-inputs @@ -28821,14 +29200,14 @@ for creating, simulating, or validating values for such parameters.") (define-public r-tune (package (name "r-tune") - (version "0.2.0") + (version "1.0.0") (source (origin (method url-fetch) (uri (cran-uri "tune" version)) (sha256 (base32 - "05gxlsaqv6sjk11r5g4nkdd6hlb3bnfmc29cx4vln1blha37jx4i")))) + "0jh29dy4gwa1fyi01fp1305hkxw1mpkx704j6kydplh8h09rv80p")))) (properties `((upstream-name . "tune"))) (build-system r-build-system) (propagated-inputs @@ -28849,6 +29228,7 @@ for creating, simulating, or validating values for such parameters.") r-rsample r-tibble r-tidyr + r-tidyselect r-vctrs r-withr r-workflows @@ -28865,14 +29245,14 @@ methods, and post-processing steps.") (define-public r-workflowsets (package (name "r-workflowsets") - (version "0.2.1") + (version "1.0.0") (source (origin (method url-fetch) (uri (cran-uri "workflowsets" version)) (sha256 (base32 - "0q42nhnw0mbivadcfb07v71fp39x8fcnjipvn5l5yhjzc56cfxi8")))) + "12wj0m6kqnjh8k5k14kqh40wf14gzyg5l3shhbpr2lvk87l9ssqq")))) (properties `((upstream-name . "workflowsets"))) (build-system r-build-system) (propagated-inputs @@ -28881,7 +29261,10 @@ methods, and post-processing steps.") r-hardhat r-generics r-ggplot2 + r-glue r-lifecycle + r-parsnip + r-pillar r-prettyunits r-purrr r-rlang @@ -29216,16 +29599,22 @@ expressive statistical grammar that coheres with the Tidy design framework.") (define-public r-modeldata (package (name "r-modeldata") - (version "0.1.1") + (version "1.0.0") (source (origin (method url-fetch) (uri (cran-uri "modeldata" version)) (sha256 (base32 - "0jgrwf9k8p9j3ywg3yv2wzwsx3snlwm3dd9vfqwhlr7j63jg3cm4")))) + "16ad8g86alahirgmp8bhb6v1ghayw965bdz5mrpnq7nnncazaqcm")))) (properties `((upstream-name . "modeldata"))) (build-system r-build-system) + (propagated-inputs + (list r-dplyr + r-mass + r-purrr + r-rlang + r-tibble)) (home-page "https://modeldata.tidymodels.org") (synopsis "Data sets useful for modeling packages") (description @@ -29262,14 +29651,14 @@ use.") (define-public r-tidymodels (package (name "r-tidymodels") - (version "0.2.0") + (version "1.0.0") (source (origin (method url-fetch) (uri (cran-uri "tidymodels" version)) (sha256 (base32 - "1xkv4s4kn7k9137svb39zrm5302gxpxyp1jv5bb6z0xrvj5wwa4i")))) + "1zqdq7zwmhc19zs77x27l5ja01rhj01v8dw182j8jhy49h0alyz3")))) (properties `((upstream-name . "tidymodels"))) (build-system r-build-system) (propagated-inputs @@ -29454,14 +29843,14 @@ covariate (usually group indicator) and the scores.") (define-public r-qtl (package (name "r-qtl") - (version "1.50") + (version "1.52") (source (origin (method url-fetch) (uri (cran-uri "qtl" version)) (sha256 (base32 - "1mcy9wlp5lj5f3z4mf3n5li7x32vj67rmhjnzsp8fhfw0ipnaf1d")))) + "0q49g3ar1451whsl6ig7kz4mg8s9zxlcvgkj4ivyw4995wbwc2ij")))) (build-system r-build-system) (home-page "https://rqtl.org/") (synopsis "R package for analyzing QTL experiments in genetics") @@ -30054,13 +30443,13 @@ well as email and push notifications.") (define-public r-mlr3measures (package (name "r-mlr3measures") - (version "0.4.1") + (version "0.5.0") (source (origin (method url-fetch) (uri (cran-uri "mlr3measures" version)) (sha256 (base32 - "1kbw3xd7c9x65v9zzs8i5skmrvl0mf2wsbyssmiif0lvrbzfhcmb")))) + "0k0i1xx63lds1870p2ljy1dlp2i376gdd0sq9s4xiqljqjb8va57")))) (build-system r-build-system) (propagated-inputs (list r-checkmate r-prroc)) @@ -30161,13 +30550,13 @@ performing ordinal regression.") (define-public r-paradox (package (name "r-paradox") - (version "0.9.0") + (version "0.10.0") (source (origin (method url-fetch) (uri (cran-uri "paradox" version)) (sha256 (base32 - "0fzq59903fklgj3kblnpzasy13a82s72c1qjsy7d1m0fyj28ahdw")))) + "08h92wk8splf0w3rach9zbk3xz13phgcd1yybmgbs0sj4vx93whd")))) (build-system r-build-system) (propagated-inputs (list r-backports r-checkmate r-data-table r-mlr3misc r-r6)) @@ -30182,13 +30571,13 @@ implemented as @code{R6} classes.") (define-public r-mlr3 (package (name "r-mlr3") - (version "0.13.3") + (version "0.13.4") (source (origin (method url-fetch) (uri (cran-uri "mlr3" version)) (sha256 (base32 - "010kl51zsgpc0qv63g1fg9kiw9m0wzqskcr14f1j8b9zi1lwi0bf")))) + "13g0krjry0da1yfm6hrdq63ga5rwag5lkgp375394michiipnbwk")))) (build-system r-build-system) (propagated-inputs (list r-r6 @@ -30596,14 +30985,14 @@ AGG to use as alternative to the raster devices provided through the (define-public r-downlit (package (name "r-downlit") - (version "0.4.1") + (version "0.4.2") (source (origin (method url-fetch) (uri (cran-uri "downlit" version)) (sha256 (base32 - "1h9jjrrfm1k4lz7hlg9qvqny5s1qq3p4l9pzsy6vqg4zmh2nb85v")))) + "0g3yncj3gmaqsc6cw7g9slgvd0kfk2414yz5m1dilk8h15lzdprk")))) (properties `((upstream-name . "downlit"))) (build-system r-build-system) (propagated-inputs @@ -30630,21 +31019,21 @@ in output to the equivalent HTML.") (define-public r-pkgdown (package (name "r-pkgdown") - (version "2.0.5") + (version "2.0.6") (source (origin (method url-fetch) (uri (cran-uri "pkgdown" version)) (sha256 (base32 - "1bk10jh01v4yqzmpvhs2iw9hwwj0nldskbm2942hjx3xf08y1q4i")))) + "0sbz3kzd0hbdnszylsb281arldn2z1c9yxifhj4zv2dilp46b6nj")))) (properties `((upstream-name . "pkgdown"))) (build-system r-build-system) (inputs (list pandoc)) (propagated-inputs (list r-bslib r-callr - r-crayon + r-cli r-desc r-digest r-downlit @@ -31101,14 +31490,14 @@ data you need the @code{pdftools} package.") (define-public r-pdftools (package (name "r-pdftools") - (version "3.2.1") + (version "3.3.0") (source (origin (method url-fetch) (uri (cran-uri "pdftools" version)) (sha256 (base32 - "1b9ppdndvlf8nl0i3xy1rx4f9j0j8ic6q9n0c4zn3rv6jdy8zqfi")))) + "151f7vaznxigwka4qhp17v4gnahm245rfgcvb8j132vix7md44q9")))) (properties `((upstream-name . "pdftools"))) (build-system r-build-system) (inputs (list zlib poppler)) @@ -31256,14 +31645,14 @@ light-weight geometry library used by @url{http://postgis.net/,PostGIS}.") (define-public r-stars (package (name "r-stars") - (version "0.5-5") + (version "0.5-6") (source (origin (method url-fetch) (uri (cran-uri "stars" version)) (sha256 (base32 - "0hcbzr8c7wk30qjwrvx6bflzwkjpms79pavaxawnq1h8kry5fngk")))) + "0qcli9bangpym4yp96yfibd5f4li5qw1622jnbvzfd9n8aakqhg0")))) (properties `((upstream-name . "stars"))) (build-system r-build-system) (propagated-inputs @@ -31340,31 +31729,32 @@ supply the workflow to create thematic maps. This package also facilitates (define-public r-rtweet (package (name "r-rtweet") - (version "0.7.0") + (version "1.0.2") (source - (origin - (method url-fetch) - (uri (cran-uri "rtweet" version)) - (sha256 - (base32 - "05pbvxm2vmf6935b9s6663k3aifnkr3m52wh2jvnplmrwyrfpn9n")))) + (origin + (method url-fetch) + (uri (cran-uri "rtweet" version)) + (sha256 + (base32 + "1dhdq2c2zl88h29caqpm7zh2i5970q7rfg98zf2xb7x4zak7bq9x")))) (properties `((upstream-name . "rtweet"))) (build-system r-build-system) (propagated-inputs - (list r-httpuv - r-httr - r-jsonlite - r-magrittr - r-progress - r-rcpp - r-tibble)) + (list r-bit64 + r-curl + r-httr + r-jsonlite + r-lifecycle + r-progress + r-rlang + r-tibble + r-withr)) (native-inputs (list r-knitr)) - (home-page - "https://docs.ropensci.org/rtweet/") - (synopsis "Collecting Twitter Data") + (home-page "https://docs.ropensci.org/rtweet/") + (synopsis "Collect Twitter data") (description - "An implementation of calls designed to collect and organize Twitter data -via @url{https://developer.twitter.com/en/docs,Twitter's REST and stream + "This package implements tools designed to collect and organize Twitter +data via @url{https://developer.twitter.com/en/docs,Twitter's REST and stream Application Program Interfaces (API)}.") (license license:expat))) @@ -31544,14 +31934,14 @@ quantitative real-time polymerase chain reaction (qPCR).") (define-public r-textplot (package (name "r-textplot") - (version "0.2.1") + (version "0.2.2") (source (origin (method url-fetch) (uri (cran-uri "textplot" version)) (sha256 (base32 - "10nxh9axhy6kyp6f3rz7smq08yl35ydx9jx47bs7i0bmcl2kwxvl")))) + "1ag2h365zsx0fxbl05s2yfhf1q13p40akvbqg4qwsb5ynh2a56bf")))) (properties `((upstream-name . "textplot"))) (build-system r-build-system) (propagated-inputs @@ -32013,14 +32403,14 @@ the @code{raster} package that is suitable for extracting raster values using (define-public r-rapiserialize (package (name "r-rapiserialize") - (version "0.1.0") + (version "0.1.1") (source (origin (method url-fetch) (uri (cran-uri "RApiSerialize" version)) (sha256 (base32 - "0gm2j8kh40imhncwwx1sx9kmraaxcxycvgwls53lcyy2ap344k9j")))) + "0gkix6s5hb7pdbb8miyz36hghx59hhwxql0slqnlr5nakh31klxp")))) (properties `((upstream-name . "RApiSerialize"))) (build-system r-build-system) (home-page @@ -32389,14 +32779,14 @@ to archive and assign DOIs to data, software, figures, and more.") (define-public r-dismo (package (name "r-dismo") - (version "1.3-5") + (version "1.3-8") (source (origin (method url-fetch) (uri (cran-uri "dismo" version)) (sha256 (base32 - "1rqf6h4imbqvs7hjd1k4my6154wg0qnmnp5byan403rcshr1jbl1")))) + "17dwk4fv9l903fp38ab9arc4dfyrj1sbllfxlybkdwm9lpsn1qv6")))) (properties `((upstream-name . "dismo"))) (build-system r-build-system) (propagated-inputs @@ -32447,18 +32837,18 @@ fully reproducible.") (define-public r-paws-common (package (name "r-paws-common") - (version "0.3.17") + (version "0.4.0") (source (origin (method url-fetch) (uri (cran-uri "paws.common" version)) (sha256 (base32 - "1dg18hwnrjd6m1vjcxfs2vm1zxciivf4vzhq0z76dmmiqz2yjm28")))) + "1zlv0ahv633z1fwx1syajzqg49zd9hs537df53gm2qch8b66y4bh")))) (properties `((upstream-name . "paws.common"))) (build-system r-build-system) (propagated-inputs - (list r-base64enc r-digest r-httr r-jsonlite r-xml2)) + (list r-base64enc r-curl r-digest r-httr r-jsonlite r-xml2)) (home-page "https://cran.r-project.org/package=paws.common") (synopsis "Paws low-level Amazon Web Services API") (description |