diff options
Diffstat (limited to 'gnu/packages/cran.scm')
| -rw-r--r-- | gnu/packages/cran.scm | 213 |
1 files changed, 212 insertions, 1 deletions
diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index cb39772ae5..95e0faf2a0 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -1,5 +1,5 @@ ;;; GNU Guix --- Functional package management for GNU -;;; Copyright © 2015, 2016, 2017 Ricardo Wurmus <rekado@elephly.net> +;;; Copyright © 2015, 2016, 2017, 2018 Ricardo Wurmus <rekado@elephly.net> ;;; Copyright © 2017 Roel Janssen <roel@gnu.org> ;;; Copyright © 2017 Tobias Geerinckx-Rice <me@tobias.gr> ;;; @@ -1861,3 +1861,214 @@ written purely in R with no external dependencies. It is useful with the Rscript front-end and facilitates turning an R script into an executable script.") (license license:gpl3+))) + +(define-public r-debugme + (package + (name "r-debugme") + (version "1.1.0") + (source + (origin + (method url-fetch) + (uri (cran-uri "debugme" version)) + (sha256 + (base32 + "1c9sg55zvf10h8198jdnpamm6f66lzw3c3jnmdp9ls6na0j0xbjd")))) + (build-system r-build-system) + (propagated-inputs `(("r-crayon" ,r-crayon))) + (home-page "https://github.com/r-lib/debugme#readme") + (synopsis "Debug R packages") + (description + "This package allows the user to specify debug messages as special string +constants, and control debugging of packages via environment variables.") + (license license:expat))) + +(define-public r-processx + (package + (name "r-processx") + (version "2.0.0.1") + (source + (origin + (method url-fetch) + (uri (cran-uri "processx" version)) + (sha256 + (base32 + "0yw23lp9xjvbpswzghkmjiayw7p19hbvmgv58k3i6b8g5nav4qcg")))) + (build-system r-build-system) + (propagated-inputs + `(("r-assertthat" ,r-assertthat) + ("r-crayon" ,r-crayon) + ("r-debugme" ,r-debugme) + ("r-r6" ,r-r6))) + (home-page "https://github.com/r-lib/processx3") + (synopsis "Execute and control system processes") + (description + "This package provides portable tools to run system processes in the +background. It can check if a background process is running; wait on a +background process to finish; get the exit status of finished processes; kill +background processes and their children; restart processes. It can read the +standard output and error of the processes, using non-blocking connections. +@code{processx} can poll a process for standard output or error, with a +timeout. It can also poll several processes at once.") + (license license:expat))) + +(define-public r-tsp + (package + (name "r-tsp") + (version "1.1-5") + (source + (origin + (method url-fetch) + (uri (cran-uri "TSP" version)) + (sha256 + (base32 + "03xxfr5kk4zhzpb1q1pwncdp0dhchm9b48wzhvvxn2dxf3mnby2w")))) + (properties `((upstream-name . "TSP"))) + (build-system r-build-system) + (propagated-inputs `(("r-foreach" ,r-foreach))) + (home-page "https://cran.r-project.org/web/packages/TSP/") + (synopsis "Traveling salesperson problem (TSP)") + (description "This package provides basic infrastructure and some +algorithms for the @dfn{traveling salesperson problem}(TSP) (also known as the +traveling salesman problem).") + (license license:gpl3))) + +(define-public r-qap + (package + (name "r-qap") + (version "0.1-1") + (source + (origin + (method url-fetch) + (uri (cran-uri "qap" version)) + (sha256 + (base32 + "0d2d1ni1camixyi45lfy00f4pn3p063k7bsi8gj5scp6n15mdgb0")))) + (build-system r-build-system) + (native-inputs `(("gfortran" ,gfortran))) + (home-page "http://cran.r-project.org/web/packages/qap/") + (synopsis "Heuristics for the quadratic assignment problem (QAP)") + (description "This package implements heuristics for the @dfn{quadratic +assignment problem} (QAP). Currently only a simulated annealing heuristic is +available.") + (license license:gpl3))) + +(define-public r-gclus + (package + (name "r-gclus") + (version "1.3.1") + (source + (origin + (method url-fetch) + (uri (cran-uri "gclus" version)) + (sha256 + (base32 + "02ba6zj9bjwrzykamjp40ajynx9xjx9h2i85n0ym0r5lcki4x6fn")))) + (build-system r-build-system) + (propagated-inputs `(("r-cluster" ,r-cluster))) + (home-page "http://cran.r-project.org/web/packages/gclus/") + (synopsis "Clustering graphics") + (description "This package orders panels in scatterplot matrices and +parallel coordinate displays by some merit index. It contains various indices +of merit, ordering functions, and enhanced versions of @code{pairs} and +@code{parcoord} which color panels according to their merit level.") + (license license:gpl2+))) + +(define-public r-webshot + (package + (name "r-webshot") + (version "0.5.0") + (source + (origin + (method url-fetch) + (uri (cran-uri "webshot" version)) + (sha256 + (base32 + "07r71zzmggp4jf92x4ws4wg6v1x98vaj01lsar85bnb30n5vx8gh")))) + (build-system r-build-system) + (propagated-inputs + `(("r-jsonlite" ,r-jsonlite) + ("r-magrittr" ,r-magrittr) + ("r-processx" ,r-processx) + ("r-withr" ,r-withr))) + (home-page "https://github.com/wch/webshot/") + (synopsis "Take screenshots of web pages") + (description + "Webshot makes it easy to take screenshots of web pages from within R. +It can also run Shiny applications locally and take screenshots of the +application; and it can render and screenshot static as well as interactive R +Markdown documents.") + (license license:gpl2))) + +(define-public r-seriation + (package + (name "r-seriation") + (version "1.2-3") + (source + (origin + (method url-fetch) + (uri (cran-uri "seriation" version)) + (sha256 + (base32 + "1q6hw4hjw224b4y0dc0j630v2pgj6sn455nwkilb70w8k31hpk92")))) + (build-system r-build-system) + (propagated-inputs + `(("r-cluster" ,r-cluster) + ("r-colorspace" ,r-colorspace) + ("r-dendextend" ,r-dendextend) + ("r-gclus" ,r-gclus) + ("r-gplots" ,r-gplots) + ("r-mass" ,r-mass) + ("r-qap" ,r-qap) + ("r-registry" ,r-registry) + ("r-tsp" ,r-tsp))) + (native-inputs `(("gfortran" ,gfortran))) + (home-page "http://s2.smu.edu/IDA/seriation/") + (synopsis "Infrastructure for ordering objects using seriation") + (description + "This package provides infrastructure for seriation with an +implementation of several seriation/sequencing techniques to reorder matrices, +dissimilarity matrices, and dendrograms. It also provides (optimally) +reordered heatmaps, color images and clustering visualizations like +dissimilarity plots, and visual assessment of cluster tendency plots (VAT and +iVAT).") + (license license:gpl3))) + +(define-public r-heatmaply + (package + (name "r-heatmaply") + (version "0.14.1") + (source + (origin + (method url-fetch) + (uri (cran-uri "heatmaply" version)) + (sha256 + (base32 + "03p2caclhfgqgpx3wwck5h06jy3mxgs05gjmwkb7hmwghkjh41jc")))) + (build-system r-build-system) + (propagated-inputs + `(("r-assertthat" ,r-assertthat) + ("r-colorspace" ,r-colorspace) + ("r-dendextend" ,r-dendextend) + ("r-ggplot2" ,r-ggplot2) + ("r-gplots" ,r-gplots) + ("r-htmlwidgets" ,r-htmlwidgets) + ("r-magrittr" ,r-magrittr) + ("r-plotly" ,r-plotly) + ("r-rcolorbrewer" ,r-rcolorbrewer) + ("r-reshape2" ,r-reshape2) + ("r-scales" ,r-scales) + ("r-seriation" ,r-seriation) + ("r-viridis" ,r-viridis) + ("r-webshot" ,r-webshot))) + (home-page "https://cran.r-project.org/package=heatmaply") + (synopsis "Interactive cluster heat maps using plotly") + (description "Heatmaps are used in many fields for visualizing +observations, correlations, missing values patterns, and more. Interactive +heatmaps allow the inspection of specific value by hovering the mouse over a +cell, as well as zooming into a region of the heatmap by dragging a rectangle +around the relevant area. This work is based on the @code{ggplot2} and +@code{plotly.js} engine. It produces similar heatmaps as @code{heatmap.2} or +@code{d3heatmap}, with the advantage of speed, the ability to zoom from the +dendrogram panes, and the placing of factor variables in the sides of the +heatmap.") + (license (list license:gpl2 license:gpl3)))) |