diff options
Diffstat (limited to 'gnu/packages/cran.scm')
| -rw-r--r-- | gnu/packages/cran.scm | 648 |
1 files changed, 434 insertions, 214 deletions
diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index fbade0cc39..5ef8813dd5 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -17,7 +17,7 @@ ;;; Copyright © 2018 Marius Bakke <mbakke@fastmail.com> ;;; Copyright © 2018, 2019 Brett Gilio <brettg@gnu.org> ;;; Copyright © 2019 Nicolò Balzarotti <anothersms@gmail.com> -;;; Copyright © 2019, 2020 Wiktor Żelazny <wzelazny@vurv.cz> +;;; Copyright © 2019, 2020, 2021 Wiktor Żelazny <wzelazny@vurv.cz> ;;; Copyright © 2019 Arne Babenhauserheide <arne_bab@web.de> ;;; Copyright © 2019, 2020 Efraim Flashner <efraim@flashner.co.il> ;;; Copyright © 2020 Todor Kondić <tk.code@protonmail.com> @@ -85,7 +85,6 @@ #:use-module (gnu packages java) #:use-module (gnu packages javascript) #:use-module (gnu packages libevent) - #:use-module (gnu packages lisp-xyz) #:use-module (gnu packages machine-learning) #:use-module (gnu packages maths) #:use-module (gnu packages mpi) @@ -189,14 +188,14 @@ etc.") (define-public r-datawizard (package (name "r-datawizard") - (version "0.2.0") + (version "0.2.0.1") (source (origin (method url-fetch) (uri (cran-uri "datawizard" version)) (sha256 (base32 - "1brbkjl0ds3gd0x6jl6vggzl1nfrn76z63vhj2gbl9l168iss5z3")))) + "15q491qix4a9b10wkb5bm9jnnr62smjw4qdrw4bd51i1kgvd6kl5")))) (properties `((upstream-name . "datawizard"))) (build-system r-build-system) (propagated-inputs @@ -351,14 +350,14 @@ can read and write both the metadata and the cell data in a Sheet.") (define-public r-waldo (package (name "r-waldo") - (version "0.2.5") + (version "0.3.1") (source (origin (method url-fetch) (uri (cran-uri "waldo" version)) (sha256 (base32 - "09jhwpgd6hg4qyip4r7wzpjz0jr139fyspd5ncriqimp522snqbr")))) + "16q1xjbl9g04l1r1x3nid9hmz1sa35q6j33bigdzh4y4zcd8qb7c")))) (properties `((upstream-name . "waldo"))) (build-system r-build-system) (propagated-inputs @@ -381,14 +380,14 @@ easier.") (define-public r-rticles (package (name "r-rticles") - (version "0.20") + (version "0.21") (source (origin (method url-fetch) (uri (cran-uri "rticles" version)) (sha256 (base32 - "1q17yh5rfhra85nihaaall10x4rz575350ib1bj5hd8ij9cmsam6")))) + "0xk0xz97k8r8srmniihn3y4dkxddxf97yjbsljcxlgcq8f0zcc2s")))) (properties `((upstream-name . "rticles"))) (build-system r-build-system) (propagated-inputs @@ -583,6 +582,32 @@ ordered indexed observations. It is particularly aimed at irregular time series of numeric vectors/matrices and factors.") (license license:gpl2+))) +(define-public r-fingerprint + (package + (name "r-fingerprint") + (version "3.5.7") + (source + (origin + (method url-fetch) + (uri (cran-uri "fingerprint" version)) + (sha256 + (base32 "04jcwkydjrs31pia6kq8z2n9s54im950q08hs2ay15xjxxkmb8ic")))) + (properties `((upstream-name . "fingerprint"))) + (build-system r-build-system) + (home-page "https://cran.r-project.org/package=fingerprint") + (synopsis "Functions to Operate on Binary Fingerprint Data") + (description + "This package provides functions to manipulate binary fingerprints of +arbitrary length. A fingerprint is represented by an object of S4 class +@code{fingerprint}. The bitwise logical functions in R are overridden so that +they can be used directly with @code{fingerprint} objects. A number of +distance metrics are also available. Fingerprints can be converted to +Euclidean vectors (i.e., points on the unit hypersphere) and can also be +folded. Arbitrary fingerprint formats can be handled via line handlers. +Currently handlers are provided for CDK, MOE and BCI fingerprint data.") + ;; Any version of the GPL + (license (list license:gpl2+ license:gpl3+)))) + (define-public r-ggalluvial (package (name "r-ggalluvial") @@ -659,22 +684,43 @@ variables.") ") (license license:gpl2+))) +(define-public r-lmodel2 + (package + (name "r-lmodel2") + (version "1.7-3") + (source + (origin + (method url-fetch) + (uri (cran-uri "lmodel2" version)) + (sha256 + (base32 "1fiin2nkffbihz1s8ixmw9lgf8mn3j9krr8iiflizk10mdv54hnb")))) + (properties `((upstream-name . "lmodel2"))) + (build-system r-build-system) + (home-page "https://cran.r-project.org/package=lmodel2") + (synopsis "Model II regression") + (description + "This package computes model II simple linear regression using +@dfn{ordinary least squares} (OLS), @dfn{major axis} (MA), @dfn{standard major +axis} (SMA), and @dfn{ranged major axis} (RMA).") + (license license:gpl2))) + (define-public r-ggpmisc (package (name "r-ggpmisc") - (version "0.4.2-1") + (version "0.4.3") (source (origin (method url-fetch) (uri (cran-uri "ggpmisc" version)) (sha256 (base32 - "1jkxcmpxq3b5ng276adph25s5w9imjxr1lqasqw50d2kcdhq58cy")))) + "0ff84ybj4648c1v05ng3l62g9n52igjwvm320qkfbdzdxzncpzik")))) (build-system r-build-system) (propagated-inputs `(("r-dplyr" ,r-dplyr) ("r-generics" ,r-generics) ("r-ggplot2" ,r-ggplot2) ("r-ggpp" ,r-ggpp) + ("r-lmodel2" ,r-lmodel2) ("r-lubridate" ,r-lubridate) ("r-mass" ,r-mass) ("r-plyr" ,r-plyr) @@ -719,14 +765,14 @@ organisms via the @code{g:Profiler} toolkit.") (define-public r-gprofiler2 (package (name "r-gprofiler2") - (version "0.2.0") + (version "0.2.1") (source (origin (method url-fetch) (uri (cran-uri "gprofiler2" version)) (sha256 (base32 - "0q8hl3gdxy34c0181ql405fdklz82nfvmwdcafd5mzf935rjpyjg")))) + "0r0h34b35xzgd9rh55yndn0anxy0z45zdlqa6qfmpn91b6v1bb1g")))) (properties `((upstream-name . "gprofiler2"))) (build-system r-build-system) (propagated-inputs @@ -985,13 +1031,13 @@ high-dimensional data.") (define-public r-shadowtext (package (name "r-shadowtext") - (version "0.0.8") + (version "0.0.9") (source (origin (method url-fetch) (uri (cran-uri "shadowtext" version)) (sha256 (base32 - "16lhhd7q1qz82grkq1q4fn5mkq8nphh4wvva4jijrl605cd6cc7v")))) + "1g6mgnfnzf2c17yzqk3zybfc5y62p5ndrbikxb3xcm2hiljiiqna")))) (properties `((upstream-name . "shadowtext"))) (build-system r-build-system) (propagated-inputs @@ -1448,13 +1494,13 @@ Zucchini.") (define-public r-httpuv (package (name "r-httpuv") - (version "1.6.2") + (version "1.6.3") (source (origin (method url-fetch) (uri (cran-uri "httpuv" version)) (sha256 (base32 - "1p5savhrcqlagnnh8ccnhpypbif9jhp97nq4rnhldn98gmb4a7sn")) + "0xh8y05k4jxdwp9xh4x478y3scnv80q05l9gxk2ni6f0dk43iqxz")) ;; Unvendor bundled libraries. As of 1.5.4 the vendored libuv ;; only contains fixes for building on Solaris. (patches (search-patches "r-httpuv-1.5.5-unvendor-libuv.patch")) @@ -1572,17 +1618,18 @@ a list of p-values.") (define-public r-htmltools (package (name "r-htmltools") - (version "0.5.1.1") + (version "0.5.2") (source (origin (method url-fetch) (uri (cran-uri "htmltools" version)) (sha256 (base32 - "1fm4cymz4hz6lds80m9j5q00xy5flkrmfn5dkrn3s3rkzqpyggzh")))) + "1yv74ydyqm28gfhimmr7825sj1iaawpwsnzq05c2ma756q2dbivx")))) (build-system r-build-system) (propagated-inputs `(("r-base64enc" ,r-base64enc) ("r-digest" ,r-digest) + ("r-fastmap" ,r-fastmap) ("r-rlang" ,r-rlang))) (home-page "https://cran.r-project.org/web/packages/htmltools") (synopsis "R tools for HTML") @@ -1593,13 +1640,13 @@ a list of p-values.") (define-public r-htmlwidgets (package (name "r-htmlwidgets") - (version "1.5.3") + (version "1.5.4") (source (origin (method url-fetch) (uri (cran-uri "htmlwidgets" version)) (sha256 (base32 - "0a8g7wqd3qxnhwkm9c9bkzg29db7gvjiaa5y038ln8nch8qq7981")))) + "1hgz8sx8xrvfcdwa4q15k942w4qsqg8lyxbbf7qyfzbi807wcgqs")))) (build-system r-build-system) (propagated-inputs `(("r-htmltools" ,r-htmltools) @@ -1905,20 +1952,21 @@ language, which is stable, powerful, and CSS compatible.") (define-public r-bslib (package (name "r-bslib") - (version "0.2.5.1") + (version "0.3.0") (source (origin (method url-fetch) (uri (cran-uri "bslib" version)) (sha256 (base32 - "16f8d7lp2bdq1vipr60l75gibgdq08hmx212dhrh66nwf7qglhky")) + "0zfjavz5jw4lfbrmc3rgsivcrxq2ia9jwmfbcrdxnxlmyri8qinr")) (snippet '(for-each delete-file '("inst/lib/bs-a11y-p/plugins/js/bootstrap-accessibility.min.js" "inst/lib/bs-colorpicker/js/bootstrap-colorpicker.min.js" - "inst/lib/bs-sass/assets/javascripts/bootstrap.min.js" - "inst/lib/bs/dist/js/bootstrap.bundle.min.js"))))) + "inst/lib/bs3/assets/javascripts/bootstrap.min.js" + "inst/lib/bs4/dist/js/bootstrap.bundle.min.js" + "inst/lib/bs5/dist/js/bootstrap.bundle.min.js"))))) (properties `((upstream-name . "bslib"))) (build-system r-build-system) (arguments @@ -1937,10 +1985,12 @@ language, which is stable, powerful, and CSS compatible.") "bs-a11y-p/plugins/js/bootstrap-accessibility.min.js") ("bs-colorpicker/js/bootstrap-colorpicker.js" "bs-colorpicker/js/bootstrap-colorpicker.min.js") - ("bs-sass/assets/javascripts/bootstrap.js" - "bs-sass/assets/javascripts/bootstrap.min.js") - (,(assoc-ref inputs "js-bootstrap-bundle") - "bs/dist/js/bootstrap.bundle.min.js")))) + ("bs3/assets/javascripts/bootstrap.js" + "bs3/assets/javascripts/bootstrap.min.js") + (,(assoc-ref inputs "js-bootstrap4-bundle") + "bs4/dist/js/bootstrap.bundle.min.js") + (,(assoc-ref inputs "js-bootstrap5-bundle") + "bs5/dist/js/bootstrap.bundle.min.js")))) (lambda (sources targets) (for-each (lambda (source target) (format #t "Processing ~a --> ~a~%" @@ -1952,18 +2002,24 @@ language, which is stable, powerful, and CSS compatible.") `(("r-htmltools" ,r-htmltools) ("r-jquerylib" ,r-jquerylib) ("r-jsonlite" ,r-jsonlite) - ("r-magrittr" ,r-magrittr) ("r-rlang" ,r-rlang) ("r-sass" ,r-sass))) (native-inputs `(("esbuild" ,esbuild) - ("js-bootstrap-bundle" + ("js-bootstrap4-bundle" + ,(origin + (method url-fetch) + (uri "https://raw.githubusercontent.com/twbs/bootstrap/v4.6.0/dist/js/bootstrap.bundle.js") + (sha256 + (base32 + "04abvgp923w36qfqkkl2syim3bl119nwxbgials90z1jyb8jgss1")))) + ("js-bootstrap5-bundle" ,(origin (method url-fetch) - (uri "https://raw.githubusercontent.com/twbs/bootstrap/v4.5.3/dist/js/bootstrap.bundle.js") + (uri "https://raw.githubusercontent.com/twbs/bootstrap/v5.0.2/dist/js/bootstrap.bundle.js") (sha256 (base32 - "1lcsxj7gcm56va3gck47ggpwzjxrzq27sgjzdw6c54qkp0487sak")))))) + "06vin94nqw1vzs4zrqcms8z9js9fckbj8gwyx07awm8jkjhnqfhl")))))) (home-page "https://rstudio.github.io/bslib/") (synopsis "Custom Bootstrap Sass themes for shiny and rmarkdown") (description @@ -2086,7 +2142,7 @@ previewing themes in real time.") ("js-strftime" ,js-strftime) ("js-highlight" ,js-highlight))) (native-inputs - `(("uglify-js" ,node-uglify-js) + `(("uglifyjs" ,node-uglify-js) ("gfortran" ,gfortran) ("js-bootstrap-accessibility" ,(origin @@ -2153,7 +2209,7 @@ responsive, and powerful applications with minimal effort.") (for-each (lambda (source target) (format #t "Processing ~a --> ~a~%" source target) - (let ((minified (open-pipe* OPEN_READ "uglify-js" source))) + (let ((minified (open-pipe* OPEN_READ "uglifyjs" source))) (call-with-output-file target (lambda (port) (dump-port minified port))))) @@ -2168,7 +2224,7 @@ responsive, and powerful applications with minimal effort.") (inputs `(("js-requirejs" ,js-requirejs))) (native-inputs - `(("uglify-js" ,uglify-js) + `(("uglifyjs" ,node-uglify-js) ("js-jquery" ,(origin (method url-fetch) @@ -2206,7 +2262,7 @@ supports interactive trees, to enable rich, editable trees in Shiny.") (lambda _ (with-directory-excursion "inst/AdminLTE" (delete-file "app.min.js") - (let ((minified (open-pipe* OPEN_READ "uglify-js" "app.js"))) + (let ((minified (open-pipe* OPEN_READ "uglifyjs" "app.js"))) (call-with-output-file "app.min.js" (lambda (port) (dump-port minified port)))))))))) @@ -2215,7 +2271,7 @@ supports interactive trees, to enable rich, editable trees in Shiny.") ("r-promises" ,r-promises) ("r-shiny" ,r-shiny))) (native-inputs - `(("uglify-js" ,uglify-js))) + `(("uglifyjs" ,node-uglify-js))) (home-page "https://rstudio.github.io/shinydashboard/") (synopsis "Create dashboards with shiny") (description "This package provides an extension to the Shiny web @@ -2653,14 +2709,14 @@ data store designed for maximum speed.") (define-public r-maps (package (name "r-maps") - (version "3.3.0") + (version "3.4.0") (source (origin (method url-fetch) (uri (cran-uri "maps" version)) (sha256 (base32 - "05i2ppl5z4p8rawgqmy3z4ia05fcblpq1vvrmrkgkkpdlhczx6hr")))) + "0ispkx1szgwxhr0zzhdzgqqwcgc6psg7vry4sj4rb89w76rcq63r")))) (build-system r-build-system) (home-page "https://cran.r-project.org/web/packages/maps") (synopsis "Draw geographical maps") @@ -3010,13 +3066,13 @@ initiative to bring PASSTEC 2000 functionalities to R.") (define-public r-partykit (package (name "r-partykit") - (version "1.2-13") + (version "1.2-15") (source (origin (method url-fetch) (uri (cran-uri "partykit" version)) (sha256 (base32 - "15bfhqvx2y4vclnc3sw4v7ggs70pk57b3qk9aqjfvdrx444d2gd4")))) + "1b73s5l19yicwginqsg5xr7fzb005x372n0wb34kk6jb5x5lbsdj")))) (build-system r-build-system) (propagated-inputs `(("r-formula" ,r-formula) @@ -3056,13 +3112,13 @@ error stream.") (define-public r-pls (package (name "r-pls") - (version "2.7-3") + (version "2.8-0") (source (origin (method url-fetch) (uri (cran-uri "pls" version)) (sha256 - (base32 "0b3ls12w19wc4xkhnsgmb333y9lyzwq3syjc3k8zs1agnw59c7cg")))) + (base32 "1gqq8rcq6p0hs2gfzwfj690rz3pwywmnv8qzcv0wsd6aaqkskwzg")))) (build-system r-build-system) (home-page "https://mevik.net/work/software/pls.html") (synopsis "Partial Least Squares and Principal Component Regression") @@ -3136,14 +3192,14 @@ is configured appropriately so R can use them.") (define-public r-pkgload (package (name "r-pkgload") - (version "1.2.1") + (version "1.2.2") (source (origin (method url-fetch) (uri (cran-uri "pkgload" version)) (sha256 (base32 - "0ghpkv0p0xz4gpm49sywhvahhzwdakfb5kqm6yz8s1fr5gdpy9z6")))) + "0yxvik8kij0mqlki46hf6xnbfvmxwk0r2a3zwjpg0fwcd2s835a8")))) (build-system r-build-system) (propagated-inputs `(("r-cli" ,r-cli) @@ -4335,20 +4391,47 @@ acceleration scheme. A tutorial style introduction to this package is available in a vignette.") (license license:gpl2+))) +(define-public r-progressr + (package + (name "r-progressr") + (version "0.9.0") + (source + (origin + (method url-fetch) + (uri (cran-uri "progressr" version)) + (sha256 + (base32 "03sk5cv8cywahlszjkd8pfqmhbj6cv0j54d3lassa7h44f20zryg")))) + (properties `((upstream-name . "progressr"))) + (build-system r-build-system) + (propagated-inputs + `(("r-digest" ,r-digest))) + (home-page "https://progressr.futureverse.org") + (synopsis "Inclusive, unifying API for progress updates") + (description + "This package provides a minimal, unifying API for scripts and packages +to report progress updates from anywhere including when using parallel +processing. The package is designed such that the developer can to focus on +what progress should be reported on without having to worry about how to +present it. The end user has full control of how, where, and when to render +these progress updates.") + (license license:gpl3+))) + (define-public r-lava (package (name "r-lava") - (version "1.6.9") + (version "1.6.10") (source (origin (method url-fetch) (uri (cran-uri "lava" version)) (sha256 (base32 - "07difbrz8zmvdyns63958v0zw4hyv48956mcww8zh7064a564k83")))) + "0bi3c1aqwlq7jbz4raz6vga4r264w7lldi0i62xjlbl7hnlgi23s")))) (build-system r-build-system) (propagated-inputs - `(("r-numderiv" ,r-numderiv) + `(("r-future-apply" ,r-future-apply) + ("r-numderiv" ,r-numderiv) + ("r-progressr" ,r-progressr) ("r-squarem" ,r-squarem) ("r-survival" ,r-survival))) (native-inputs @@ -4666,14 +4749,14 @@ provided.") (define-public r-ipred (package (name "r-ipred") - (version "0.9-11") + (version "0.9-12") (source (origin (method url-fetch) (uri (cran-uri "ipred" version)) (sha256 (base32 - "04hfg27c72v0fz4091w3rgbc2vd7g6yl78y9plvsvh0vjlx8ymmp")))) + "0hsq00382pfd9hzpcgphjxazbxm4zx0k2r6pk6kib56k0ibm7qfn")))) (build-system r-build-system) (propagated-inputs `(("r-class" ,r-class) @@ -4693,14 +4776,14 @@ problems as well as resampling based estimators of prediction error.") (define-public r-psych (package (name "r-psych") - (version "2.1.6") + (version "2.1.9") (source (origin (method url-fetch) (uri (cran-uri "psych" version)) (sha256 (base32 - "0rmwwfrhi1h9r57cp6004alchf11f7k5amlgxj4z8zsws5v1cfxx")))) + "032h33i2qlwsw2iq82nri5y8hs7d593w40aghcvnibpi2wxf0x8l")))) (build-system r-build-system) (propagated-inputs `(("r-lattice" ,r-lattice) @@ -4904,13 +4987,13 @@ color labels, layout, etc.") (define-public r-stringdist (package (name "r-stringdist") - (version "0.9.7") + (version "0.9.8") (source (origin (method url-fetch) (uri (cran-uri "stringdist" version)) (sha256 - (base32 "0gcjxbwciviny2apvlmm9324b445rlj54b7ll368m8zid5hqxacw")))) + (base32 "1fv1hbdlm8qwx57b2aj50mw0say5k48awzavx65mfk67qp6ddk7g")))) (build-system r-build-system) (home-page "https://github.com/markvanderloo/stringdist") (synopsis "Approximate string matching and string distance functions") @@ -5056,14 +5139,14 @@ clustered data.") (define-public r-mitml (package (name "r-mitml") - (version "0.4-1") + (version "0.4-2") (source (origin (method url-fetch) (uri (cran-uri "mitml" version)) (sha256 (base32 - "1bw92fl6xp3yvawh3nbjzs4hp4alpwj6vnv6lsysd74aqndw447c")))) + "0zrmchsk012linw3m5rda6hj8xpxpwzbf4alq0nc1pzvl99aa558")))) (build-system r-build-system) (propagated-inputs `(("r-haven" ,r-haven) @@ -5196,14 +5279,14 @@ acceptance regions, log-ratio plots and Q-Q plots.") (define-public r-sm (package (name "r-sm") - (version "2.2-5.6") + (version "2.2-5.7") (source (origin (method url-fetch) (uri (cran-uri "sm" version)) (sha256 (base32 - "0c4whcx879gb4lwvqnzxl5n9xgpcqh2c54ip9ami3mwfprzcv45q")))) + "03z8igsjqr32x407asxvkrbayvm6yhv9xyfs0n8fkmv8zk5a41r6")))) (build-system r-build-system) (native-inputs `(("gfortran" ,gfortran))) (home-page "http://www.stats.gla.ac.uk/~adrian/sm/") @@ -5769,13 +5852,13 @@ iVAT).") (define-public r-xfun (package (name "r-xfun") - (version "0.25") + (version "0.26") (source (origin (method url-fetch) (uri (cran-uri "xfun" version)) (sha256 - (base32 "15xy6hpz35j3mn4gvllj5m6krh5d86l4rnlxazsqjlckr237qgg6")))) + (base32 "1997s00dzkyj15xk9w1r2h6i49srpgqzvhhyvd5pk1kwkd4809ly")))) (build-system r-build-system) ;; knitr itself depends on xfun #; @@ -5873,14 +5956,14 @@ to variables on the left-hand side of the assignment.") (define-public r-pillar (package (name "r-pillar") - (version "1.6.2") + (version "1.6.3") (source (origin (method url-fetch) (uri (cran-uri "pillar" version)) (sha256 (base32 - "1666n7q95apfmk9nii090y23si5s07nhhw0gpzd24sagzw689lfs")))) + "1ica4zjr3kmcpqh2668nmsv5dbvm4yri5952vcxja4djsgfnry3j")))) (build-system r-build-system) (propagated-inputs `(("r-cli" ,r-cli) @@ -7441,14 +7524,14 @@ simple method for converting between file types.") (define-public r-maptools (package (name "r-maptools") - (version "1.1-1") + (version "1.1-2") (source (origin (method url-fetch) (uri (cran-uri "maptools" version)) (sha256 (base32 - "0pn4gwh2rl6pfh2vbc7ln86kzlg22cfpd02z95j7zpjidz2mva8l")))) + "0fa4a43zax8gn3jdp4ngqav61x4g6l33bg9wzqbngkbjhipck59r")))) (build-system r-build-system) (propagated-inputs `(("r-foreign" ,r-foreign) @@ -7967,24 +8050,47 @@ weak stationarity, column means by group, weighted biplots, and a heuristic to obtain a better initial configuration in non-metric MDS.") (license license:gpl2))) +(define-public r-here + (package + (name "r-here") + (version "1.0.1") + (source + (origin + (method url-fetch) + (uri (cran-uri "here" version)) + (sha256 + (base32 "0srlr8h8qmr0wrmp7gs4g2ry5dni2hx8n947bik3s3a26f091v88")))) + (properties `((upstream-name . "here"))) + (build-system r-build-system) + (propagated-inputs `(("r-rprojroot" ,r-rprojroot))) + (native-inputs `(("r-knitr" ,r-knitr))) + (home-page "https://here.r-lib.org/") + (synopsis "Simpler way to find files") + (description + "This package lets you construct paths to your project's files. Use the +@code{here} function as a drop-in replacement for @code{file.path}, it will +always locate the files relative to your project root.") + (license license:expat))) + (define-public r-reticulate (package (name "r-reticulate") - (version "1.20") + (version "1.22") (source (origin (method url-fetch) (uri (cran-uri "reticulate" version)) (sha256 (base32 - "0ay8cb0d3lj702aw338lkc7sxj9j05izji3waww1z0lph16406bh")))) + "0v7m2pv94lfqiw8rhz3c9g66vvz4qvih4vd29rhfk2phmcwpnvmh")))) (build-system r-build-system) (inputs `(("python" ,python))) (propagated-inputs - `(("r-rappdirs" ,r-rappdirs) + `(("r-here" ,r-here) ("r-jsonlite" ,r-jsonlite) ("r-matrix" ,r-matrix) ("r-png" ,r-png) + ("r-rappdirs" ,r-rappdirs) ("r-rcpp" ,r-rcpp) ("r-withr" ,r-withr))) (native-inputs @@ -8067,14 +8173,14 @@ movies, and TV shows.") (define-public r-ggsignif (package (name "r-ggsignif") - (version "0.6.2") + (version "0.6.3") (source (origin (method url-fetch) (uri (cran-uri "ggsignif" version)) (sha256 (base32 - "18rz3dz6i8d3pznd8war01ja1fhy7f4xs7ihwszf73z44w8jkas1")))) + "1ad774c7s7y4i00xd89lfigr9aybl94q98ch598k3rchanr4b1fa")))) (build-system r-build-system) (native-inputs `(("r-knitr" ,r-knitr))) @@ -8330,14 +8436,14 @@ results to the user.") (define-public r-hdf5r (package (name "r-hdf5r") - (version "1.3.3") + (version "1.3.4") (source (origin (method url-fetch) (uri (cran-uri "hdf5r" version)) (sha256 (base32 - "0i8m4yjxggrs05slq2afvz2ckl1yc9wq7gd1s7dq2gjn46zkry50")))) + "0lxbdw1xf5yp82fkdj4wzp5mslay3qxd65459vh09dj131h5gl34")))) (build-system r-build-system) (inputs `(("hdf5" ,hdf5) @@ -8422,14 +8528,14 @@ functions.") (define-public r-rjags (package (name "r-rjags") - (version "4-10") + (version "4-11") (source (origin (method url-fetch) (uri (cran-uri "rjags" version)) (sha256 (base32 - "1nhaim84ww8fd6m8xlpmngqcnp2qpql29ahc38366fxja3ghngmx")))) + "0vs86jji4h26y8aczy8r08jiq7ax0idlrm87mmvaa5sxlqmqa705")))) (build-system r-build-system) (propagated-inputs `(("r-coda" ,r-coda))) @@ -8496,14 +8602,14 @@ references and Rd files.") (define-public r-officer (package (name "r-officer") - (version "0.3.19") + (version "0.4.0") (source (origin (method url-fetch) (uri (cran-uri "officer" version)) (sha256 (base32 - "06g2a6p0ik17fm5jlbl64kwg6jqm8hd52sfg6z87ni0c1yllzg7i")))) + "1za3vb1wmsianh9ygm6h5lyf796rni6w2adplz4z6z93r3mz4cmv")))) (build-system r-build-system) (propagated-inputs `(("r-r6" ,r-r6) @@ -8722,14 +8828,14 @@ other add-on packages.") (define-public r-insight (package (name "r-insight") - (version "0.14.3") + (version "0.14.4") (source (origin (method url-fetch) (uri (cran-uri "insight" version)) (sha256 (base32 - "1fynidv11wmh51ybwzqj3c206slfwdz8a53qr57lcxwrg7zjn94q")))) + "0h63nr337zbczbj9izyb7g5dlzwail5w70hbbn45paq6vybkqks3")))) (build-system r-build-system) (native-inputs `(("r-knitr" ,r-knitr))) @@ -8858,14 +8964,14 @@ functions.") (define-public r-flextable (package (name "r-flextable") - (version "0.6.7") + (version "0.6.8") (source (origin (method url-fetch) (uri (cran-uri "flextable" version)) (sha256 (base32 - "0yj9d84h4387vib988qqjzvknsdy4j8h7dd13ki7gqs443hzlnrd")))) + "1b4hyrarxbk4d1ma5gy162b13nm5r5ysi049bxgcfim50rh40igs")))) (build-system r-build-system) (propagated-inputs `(("r-base64enc" ,r-base64enc) @@ -9010,14 +9116,14 @@ matches version and feature constraints.") (define-public r-argparse (package (name "r-argparse") - (version "2.0.4") + (version "2.1.1") (source (origin (method url-fetch) (uri (cran-uri "argparse" version)) (sha256 (base32 - "1sgrr6acvfjbhksj45v6d5m5n5pp12kypcxisgbshlr9jdkmasd7")))) + "1k6v35g3bppcr896h4v39zh1sxxia1bxxh29xv0mhad1nvmv25j9")))) (build-system r-build-system) (inputs `(("python" ,python))) (propagated-inputs @@ -9218,14 +9324,14 @@ containing one or more SNPs that evolved under directional selection.") (define-public r-proc (package (name "r-proc") - (version "1.17.0.1") + (version "1.18.0") (source (origin (method url-fetch) (uri (cran-uri "pROC" version)) (sha256 (base32 - "1gd6a47d6bcfd237s3g7r9rws8x2sg7zrvq5k6clpc41zdpp4712")))) + "1abvbzdss12n64pp9vlgnn0q3abh0nj4n0a8cinwwvhphjrm9vym")))) (properties `((upstream-name . "pROC"))) (build-system r-build-system) (propagated-inputs @@ -11142,8 +11248,7 @@ correlation, censored, ordered and multivariate problems.") "0aman4273i8hy3z0qay1nrsr7v27m4icm1j6f4w59ylix80l5myq")))) (build-system r-build-system) (inputs - `(("pandoc" ,pandoc) - ("pandoc-citeproc" ,pandoc-citeproc))) + `(("pandoc" ,pandoc))) (native-inputs `(("r-knitr" ,r-knitr))) (propagated-inputs @@ -11168,14 +11273,14 @@ Bayesian modeling.") (define-public r-tmb (package (name "r-tmb") - (version "1.7.20") + (version "1.7.21") (source (origin (method url-fetch) (uri (cran-uri "TMB" version)) (sha256 (base32 - "14wapc8bicr4j7mmrv1hrsw407lsbr7l4cfvy3j9sfjdbrq31a37")))) + "1lf9vf28l48xhw2irxfxl4vsqzj7skzblydw32p18zddzpapl0z9")))) (properties `((upstream-name . "TMB"))) (build-system r-build-system) (propagated-inputs @@ -11239,14 +11344,14 @@ models.") (define-public r-glmmtmb (package (name "r-glmmtmb") - (version "1.1.2") + (version "1.1.2.3") (source (origin (method url-fetch) (uri (cran-uri "glmmTMB" version)) (sha256 (base32 - "1mivh385j1601668n3dg72lws9720kzm7709z509w3a71wcikmz7")))) + "1yfwwz2dhd34vgagg8hi7irkqw8padavbc7337jdiwgk3w01wqsm")))) (properties `((upstream-name . "glmmTMB"))) (build-system r-build-system) (propagated-inputs @@ -11272,14 +11377,14 @@ differentiation.") (define-public r-bayestestr (package (name "r-bayestestr") - (version "0.10.5") + (version "0.11.0") (source (origin (method url-fetch) (uri (cran-uri "bayestestR" version)) (sha256 (base32 - "0qnjl8b41d8sv9fs7633sbdq8phra62z7vqdn5mxfnqwdkvfzcgl")))) + "0bwfw1lh4yp8y77sfmxzqqqy5aw59q1lqhfcssa46ph6d4hyxwic")))) (properties `((upstream-name . "bayestestR"))) (build-system r-build-system) (propagated-inputs @@ -11587,14 +11692,14 @@ user credentials.") (define-public r-gert (package (name "r-gert") - (version "1.3.2") + (version "1.4.1") (source (origin (method url-fetch) (uri (cran-uri "gert" version)) (sha256 (base32 - "0pqrv58hqbf6cifwi9zxgnkql6a2j9i8wknnd5ng8z3d94zs12bz")))) + "1y3318whcifdng87wyngfjq18601zrlj4d8sx40v2c2m5kqmhfv2")))) (properties `((upstream-name . "gert"))) (build-system r-build-system) (inputs @@ -12590,14 +12695,14 @@ parametrizations of Nolan.") (define-public r-gsl (package (name "r-gsl") - (version "2.1-6") + (version "2.1-7") (source (origin (method url-fetch) (uri (cran-uri "gsl" version)) (sha256 (base32 - "0p4rh7npp6qbfc5sxjq86xjn7c9ivf3pd60qf1hldwckjqin7m7m")))) + "05rvky8sh3jrlz0xbd6nss8h8ykfg1v10dymhlmcykl6v5csz1hs")))) (build-system r-build-system) (inputs `(("gsl" ,gsl))) @@ -12858,13 +12963,13 @@ maps.") (define-public r-tidytree (package (name "r-tidytree") - (version "0.3.4") + (version "0.3.5") (source (origin (method url-fetch) (uri (cran-uri "tidytree" version)) (sha256 - (base32 "0bqsb0zplkqkx2mp8kpanadkds4kwwvdrc07lp0qzwqqzaxq5xa3")))) + (base32 "0zk46n3nh577k2jy34isdw845hk0blkvqk7rg5nmix5b65qsp762")))) (build-system r-build-system) (propagated-inputs `(("r-ape" ,r-ape) @@ -12872,7 +12977,9 @@ maps.") ("r-lazyeval" ,r-lazyeval) ("r-magrittr" ,r-magrittr) ("r-rlang" ,r-rlang) - ("r-tibble" ,r-tibble))) + ("r-tibble" ,r-tibble) + ("r-tidyr" ,r-tidyr) + ("r-tidyselect" ,r-tidyselect))) (native-inputs `(("r-knitr" ,r-knitr))) (home-page "https://github.com/GuangchuangYu/tidytree") @@ -12887,17 +12994,17 @@ manipulate tree data.") (define-public r-rvcheck (package (name "r-rvcheck") - (version "0.1.8") + (version "0.2.0") (source (origin (method url-fetch) (uri (cran-uri "rvcheck" version)) (sha256 - (base32 "0627bc8qmhxmd63yh6f90qni3qw1zwdpxjln2qbychzmzd4am9ac")))) + (base32 "09gx29q882vh4q1qbb8z8lc3pgmpn7bk8skzcm85mrf3x3vgvkpa")))) (build-system r-build-system) (propagated-inputs `(("r-biocmanager" ,r-biocmanager) - ("r-rlang" ,r-rlang))) + ("r-yulab-utils" ,r-yulab-utils))) (home-page "https://cran.r-project.org/web/packages/rvcheck") (synopsis "R package version check") (description @@ -13078,14 +13185,14 @@ structure of any data type.") (define-public r-corpcor (package (name "r-corpcor") - (version "1.6.9") + (version "1.6.10") (source (origin (method url-fetch) (uri (cran-uri "corpcor" version)) (sha256 (base32 - "1hi3i9d3841snppq1ks5pd8cliq1b4rm4dpsczmfqvwksg8snkrf")))) + "028fw61n61i79fhnaqx7gmdifdpbvp3yiaq9vvfrbv4k7i84r83i")))) (build-system r-build-system) (home-page "http://strimmerlab.org/software/corpcor/") (synopsis "Efficient estimation of covariance and (partial) correlation") @@ -14540,14 +14647,14 @@ library.") (define-public r-protviz (package (name "r-protviz") - (version "0.6.8") + (version "0.7.0") (source (origin (method url-fetch) (uri (cran-uri "protViz" version)) (sha256 (base32 - "0rn8fjg7791a4j2k1kk1jwx40xz20bfaavvflmhyzpl398vmmy3a")))) + "0l1pmfr9kmc90rl5s9b0141451rxrjmiiasp3lsvl2x3ps0smqaj")))) (properties `((upstream-name . "protViz"))) (build-system r-build-system) (propagated-inputs `(("r-rcpp" ,r-rcpp))) @@ -14805,14 +14912,14 @@ them in distributed compute environments.") (define-public r-parallelly (package (name "r-parallelly") - (version "1.27.0") + (version "1.28.1") (source (origin (method url-fetch) (uri (cran-uri "parallelly" version)) (sha256 (base32 - "1xxy9wcfs5s7s4926dlxmdy6mxdh7dlj2siwcbqk8hl9614dqmb3")))) + "0qy6gj1xybiziks5gvw5px81n3klgr16kvb1qn1xp6j030xqibpl")))) (properties `((upstream-name . "parallelly"))) (build-system r-build-system) (home-page "https://github.com/HenrikBengtsson/parallelly") @@ -14833,14 +14940,14 @@ port-forwarding to your local computer.") (define-public r-future (package (name "r-future") - (version "1.21.0") + (version "1.22.1") (source (origin (method url-fetch) (uri (cran-uri "future" version)) (sha256 (base32 - "0bfiy17n5rghxw0702k0vgpjkk13268lniifdlx59flf0q16d7lh")))) + "1kgdpfipnwi15wz2xvlfg3bmq424hhjzja5bks01v3phra2lmcl7")))) (build-system r-build-system) (arguments `(#:phases @@ -15011,14 +15118,14 @@ chosen parallel environment and associated foreach backend.") (define-public r-blockmodeling (package (name "r-blockmodeling") - (version "1.0.0") + (version "1.0.5") (source (origin (method url-fetch) (uri (cran-uri "blockmodeling" version)) (sha256 (base32 - "1z4w2kq0id0gb5d0lqcdaw3clplhzywarkpvvx3drivdypzl237i")))) + "1vc8gy4slsywcwxq532373i0dq73fhs5cac9mr6zz2pjaaxjghhq")))) (build-system r-build-system) (propagated-inputs `(("r-matrix" ,r-matrix))) @@ -15399,7 +15506,7 @@ to easily call your own custom JavaScript functions from R.") (format #t "Processing ~a --> ~a~%" source target) (delete-file target) - (let ((minified (open-pipe* OPEN_READ "uglify-js" source))) + (let ((minified (open-pipe* OPEN_READ "uglifyjs" source))) (call-with-output-file target (lambda (port) (dump-port minified port))))) @@ -15415,7 +15522,7 @@ to easily call your own custom JavaScript functions from R.") ("r-shinyjs" ,r-shinyjs))) (native-inputs `(("r-knitr" ,r-knitr) - ("uglify-js" ,uglify-js) + ("uglifyjs" ,node-uglify-js) ("js-jquery" ,(origin (method url-fetch) @@ -16513,13 +16620,13 @@ datum transformations.") (define-public r-spdep (package (name "r-spdep") - (version "1.1-8") + (version "1.1-11") (source (origin (method url-fetch) (uri (cran-uri "spdep" version)) (sha256 (base32 - "1k82vx58kpn0fwgcpxq2jc3qfffl8wzbgr4cdkxihrfk28kkqh7l")) + "1ym523dzpiji6c8ypa3gvw8va36gl1gnzcsvdg9drly3mlq42rpr")) (snippet '(for-each delete-file '("inst/doc/nb_igraph.html" "inst/doc/nb_igraph.R" @@ -16538,15 +16645,18 @@ datum transformations.") `(("r-boot" ,r-boot) ("r-coda" ,r-coda) ("r-deldir" ,r-deldir) + ("r-e1071" ,r-e1071) ("r-expm" ,r-expm) ("r-gmodels" ,r-gmodels) ("r-learnbayes" ,r-learnbayes) ("r-mass" ,r-mass) ("r-matrix" ,r-matrix) ("r-nlme" ,r-nlme) + ("r-s2" ,r-s2) ("r-sf" ,r-sf) ("r-sp" ,r-sp) - ("r-spdata" ,r-spdata))) + ("r-spdata" ,r-spdata) + ("r-units" ,r-units))) (native-inputs `(("r-knitr" ,r-knitr))) (home-page "https://github.com/r-spatial/spdep/") @@ -16813,14 +16923,14 @@ include (define-public r-haplo-stats (package (name "r-haplo-stats") - (version "1.8.6") + (version "1.8.7") (source (origin (method url-fetch) (uri (cran-uri "haplo.stats" version)) (sha256 (base32 - "1imz4gs0n57vixwwbirrihpgvn2pyj5da4rgjcjk14n2xkk0nay7")))) + "1q2zn72j92bwhcdswk4qqfgzch56p9pcy2xhkd3safvqp3l9rzpw")))) (properties `((upstream-name . "haplo.stats"))) (build-system r-build-system) (propagated-inputs @@ -16842,14 +16952,14 @@ examples in the vignette.") (define-public r-bqtl (package (name "r-bqtl") - (version "1.0-32") + (version "1.0-33") (source (origin (method url-fetch) (uri (cran-uri "bqtl" version)) (sha256 (base32 - "0jjqgsm9fmvz5nkgz608xfljjpmaf4rs4f7kxvpqn4b1l9s5lhci")))) + "1sbzpi9z94f010lw2y1gmifjrvpmiqs4m26za7vr1xz72azrqvs9")))) (build-system r-build-system) (native-inputs `(("gfortran" ,gfortran))) (home-page "http://famprevmed.ucsd.edu/faculty/cberry/bqtl/") @@ -16862,14 +16972,14 @@ lines. It includes maximum likelihood and Bayesian tools.") (define-public r-ibdreg (package (name "r-ibdreg") - (version "0.3.1") + (version "0.3.6") (source (origin (method url-fetch) (uri (cran-uri "ibdreg" version)) (sha256 (base32 - "0kgx9iavgm6d6njhki7bm82d6lw2c7kcch2pryd339js2hm0l5gq")))) + "1x8z0vr2cmdks12hxfm0wwxskb0cr669w5j5rpa2ln8q704yy41g")))) (build-system r-build-system) (home-page "https://www.mayo.edu/research/labs/\ statistical-genetics-genetic-epidemiology/software") @@ -16980,13 +17090,13 @@ SELECT or UPDATE queries to an end-point.") (define-public r-bookdown (package (name "r-bookdown") - (version "0.23") + (version "0.24") (source (origin (method url-fetch) (uri (cran-uri "bookdown" version)) (sha256 (base32 - "1q0n3pjhgpsin4z7bdf0hixkfxvbbn1wc23040yl11wzc5x2f1ap")))) + "1qqvvfbpbd6sin8vpvr3zzlhlyx1i6b98yp77xj5zl220nid5slb")))) (build-system r-build-system) (propagated-inputs `(("r-htmltools" ,r-htmltools) @@ -17154,14 +17264,14 @@ the corresponding outputs (tables and graphs).") (define-public r-rjava (package (name "r-rjava") - (version "1.0-4") + (version "1.0-5") (source (origin (method url-fetch) (uri (cran-uri "rJava" version)) (sha256 (base32 - "1rd9hcwp4464icy22mmis94jb9w5gk90h97j79cy6fixdxwq4ihx")))) + "1pkgndppk498by44sai440l3i7vzndknbngn1q748cv39xvsbnrg")))) (properties `((upstream-name . "rJava"))) (build-system r-build-system) (arguments @@ -17480,14 +17590,14 @@ package.") (define-public r-ggplotify (package (name "r-ggplotify") - (version "0.0.9") + (version "0.1.0") (source (origin (method url-fetch) (uri (cran-uri "ggplotify" version)) (sha256 (base32 - "1irm8pmf20bfl2djr591jfs7g8l7vw2673ri76pimz3285l74bp0")))) + "12mk3fa8fdjxj7xxz21jkr7h91w5wdgwjqhszcz1qffwsgb773qp")))) (build-system r-build-system) (propagated-inputs `(("r-ggplot2" ,r-ggplot2) @@ -17642,14 +17752,14 @@ that fills this gap.") (define-public r-europepmc (package (name "r-europepmc") - (version "0.4") + (version "0.4.1") (source (origin (method url-fetch) (uri (cran-uri "europepmc" version)) (sha256 (base32 - "174nnyc2mbgqxb5kgqabn1vf71c2mps7ig2bclq4is0f7nb64pym")))) + "16japbndid34shqg8n0bmjrxn84xmhrylvz832zclcllm6i93fn1")))) (build-system r-build-system) (propagated-inputs `(("r-dplyr" ,r-dplyr) @@ -17905,7 +18015,7 @@ and Learning to Rank measures (LambdaMart).") (format #t "Processing ~a --> ~a~%" source target) (delete-file target) - (let ((minified (open-pipe* OPEN_READ "uglify-js" source))) + (let ((minified (open-pipe* OPEN_READ "uglifyjs" source))) (call-with-output-file target (lambda (port) (dump-port minified port))))) @@ -17917,7 +18027,7 @@ and Learning to Rank measures (LambdaMart).") ("r-htmlwidgets" ,r-htmlwidgets) ("r-igraph" ,r-igraph))) (native-inputs - `(("uglify-js" ,uglify-js) + `(("uglifyjs" ,node-uglify-js) ("js-jquery" ,(origin (method url-fetch) @@ -18033,14 +18143,14 @@ function for computing a matrix of correlation p-values.") (define-public r-ggfun (package (name "r-ggfun") - (version "0.0.3") + (version "0.0.4") (source (origin (method url-fetch) (uri (cran-uri "ggfun" version)) (sha256 (base32 - "0bf8pl3scy5fx15h1fx0799cb9sg9spjapqif9gcz27pmmgdc0n9")))) + "07njcjcj212zxanq8x3nkh7mgvqmym08rx5s41rz9flhk9gkc9jr")))) (properties `((upstream-name . "ggfun"))) (build-system r-build-system) (propagated-inputs @@ -18177,7 +18287,7 @@ etc.). Text boxes with automatic word wrap are also supported.") (for-each (lambda (source target) (format #t "Processing ~a --> ~a~%" source target) - (let ((minified (open-pipe* OPEN_READ "uglify-js" source))) + (let ((minified (open-pipe* OPEN_READ "uglifyjs" source))) (call-with-output-file target (lambda (port) (dump-port minified port))))) @@ -18191,7 +18301,7 @@ etc.). Text boxes with automatic word wrap are also supported.") ("r-rmarkdown" ,r-rmarkdown) ("r-shiny" ,r-shiny))) (native-inputs - `(("uglify-js" ,uglify-js) + `(("uglifyjs" ,node-uglify-js) ("js-raphael" ,(origin (method url-fetch) @@ -18330,20 +18440,23 @@ external dependencies. This package has is implemented purely in R.") (define-public r-aplot (package (name "r-aplot") - (version "0.0.6") + (version "0.1.1") (source (origin (method url-fetch) (uri (cran-uri "aplot" version)) (sha256 (base32 - "08kqrm9r57l8zgij897wpp428l4i50qfhp7y78r3pk5pjz37bsan")))) + "067yzy35spvs6jbccqpmvnjilglxzda6qqlqhjv311kfvnppzsyf")))) (properties `((upstream-name . "aplot"))) (build-system r-build-system) (propagated-inputs - `(("r-ggplot2" ,r-ggplot2) + `(("r-ggfun" ,r-ggfun) + ("r-ggplot2" ,r-ggplot2) + ("r-ggplotify" ,r-ggplotify) ("r-magrittr" ,r-magrittr) - ("r-patchwork" ,r-patchwork))) + ("r-patchwork" ,r-patchwork) + ("r-yulab-utils" ,r-yulab-utils))) (home-page "https://github.com/YuLab-SMU/aplot") (synopsis "Decorate a ggplot with associated information") (description @@ -18403,14 +18516,14 @@ colored by the number of neighboring points. This is useful to visualize the (define-public r-arrow (package (name "r-arrow") - (version "5.0.0") + (version "5.0.0.2") (source (origin (method url-fetch) (uri (cran-uri "arrow" version)) (sha256 (base32 - "1x9z7jr7rnsqi04vfs54qidhn8hi0j533lm7ka074jp4xdv1gxjx")))) + "1ajkcmasj22j5k15ms7iyd1rg9qpdj5jya6nmhzh8z4iiv7gy13j")))) (properties `((upstream-name . "arrow"))) (build-system r-build-system) (inputs @@ -18419,7 +18532,6 @@ colored by the number of neighboring points. This is useful to visualize the (propagated-inputs `(("r-assertthat" ,r-assertthat) ("r-bit64" ,r-bit64) - ("r-cpp11" ,r-cpp11) ("r-purrr" ,r-purrr) ("r-r6" ,r-r6) ("r-rlang" ,r-rlang) @@ -18493,14 +18605,14 @@ industry for machine learning tasks.") (define-public r-float (package (name "r-float") - (version "0.2-4") + (version "0.2-6") (source (origin (method url-fetch) (uri (cran-uri "float" version)) (sha256 (base32 - "1wf1dfybgbhvh9sa5z41xkh8liwp5n9gyydfq2mpg6bag0r457z1")))) + "1bx5yxkb123001v31jjk7h7f0qissmjydvbil5cj3jvmqkayq1a1")))) (properties `((upstream-name . "float"))) (build-system r-build-system) (native-inputs @@ -18735,18 +18847,24 @@ batch correction, and data correction.") (define-public r-styler (package (name "r-styler") - (version "1.5.1") + (version "1.6.2") (source (origin (method url-fetch) (uri (cran-uri "styler" version)) (sha256 (base32 - "11vskz58mxkiq74bdz72nyzr2jrpyq4h7g47aai7rc5r3fzl6clc")))) + "0p7p2mh4f469drfn5z4wc4xrg06mpnm9wkw76fghclf8m9vcqbx6")))) (build-system r-build-system) + (arguments + `(#:phases + (modify-phases %standard-phases + (add-after 'unpack 'set-HOME + (lambda _ (setenv "HOME" "/tmp")))))) (propagated-inputs `(("r-backports" ,r-backports) ("r-cli" ,r-cli) + ("r-glue" ,r-glue) ("r-magrittr" ,r-magrittr) ("r-purrr" ,r-purrr) ("r-r-cache" ,r-r-cache) @@ -19013,14 +19131,14 @@ classification and regression models.") (define-public r-dae (package (name "r-dae") - (version "3.2-10") + (version "3.2-11") (source (origin (method url-fetch) (uri (cran-uri "dae" version)) (sha256 (base32 - "1z5vxxzzpqfl78c2c60109jdr003j48qjisj3mrhsxa89wdv9hs9")))) + "0jrdfaw6aqv7k323yscsfpdkb3c4vi5ibncl6m96b9820pvycsz8")))) (build-system r-build-system) (propagated-inputs `(("r-ggplot2" ,r-ggplot2) @@ -19378,14 +19496,14 @@ path of values for the regularization parameter.") (define-public r-rhpcblasctl (package (name "r-rhpcblasctl") - (version "0.20-137") + (version "0.21-247") (source (origin (method url-fetch) (uri (cran-uri "RhpcBLASctl" version)) (sha256 (base32 - "0vv144sgjhf7fazk633i16fc06g9k43syyxj1g34pi9gsgdcn0nv")))) + "09276fpkj6xa0zpzzdckclj923b0xr0rhfjiiwfli3kyqi2m37v2")))) (properties `((upstream-name . "RhpcBLASctl"))) (build-system r-build-system) (home-page "https://prs.ism.ac.jp/~nakama/Rhpc/") @@ -19863,13 +19981,13 @@ effect size.") (define-public r-rgdal (package (name "r-rgdal") - (version "1.5-23") + (version "1.5-27") (source (origin (method url-fetch) (uri (cran-uri "rgdal" version)) (sha256 - (base32 "0vnb7kw762y349pda4aq1hx0smafylmn3635l963qykfji5p99cw")))) + (base32 "0mjpxs2dvbngbchlb0kfs0jcac7v88slwxmka81ds92lggnmb9b2")))) (properties `((upstream-name . "rgdal"))) (build-system r-build-system) (inputs @@ -19919,14 +20037,14 @@ atmospheric physics.") (define-public r-lifecycle (package (name "r-lifecycle") - (version "1.0.0") + (version "1.0.1") (source (origin (method url-fetch) (uri (cran-uri "lifecycle" version)) (sha256 (base32 - "13hgxk93q9387s8dnqpm8dfx610y0pr76khqksj4kbgj2fr4lcq3")))) + "183v1z1h037pvsgrj6vakpwhnhsr29hsw8p16k59dgpi00f6x9qx")))) (properties `((upstream-name . "lifecycle"))) (build-system r-build-system) (propagated-inputs @@ -19998,13 +20116,13 @@ programming problems.") (define-public r-desolve (package (name "r-desolve") - (version "1.28") + (version "1.29") (source (origin (method url-fetch) (uri (cran-uri "deSolve" version)) (sha256 - (base32 "0jasvdzig0pzhzspmy20089az19r91xjfb9q6h8gj7c4mr6fymac")))) + (base32 "02hrd31ky9id7q2bwkj436j4fj4xbs3j9sfmyi1nl7hml5dy2vr6")))) (properties `((upstream-name . "deSolve"))) (build-system r-build-system) (native-inputs @@ -20189,14 +20307,14 @@ tools for help in data interpretation.") (for-each (lambda (source target) (format #t "Processing ~a --> ~a~%" source target) - (let ((minified (open-pipe* OPEN_READ "uglify-js" source))) + (let ((minified (open-pipe* OPEN_READ "uglifyjs" source))) (call-with-output-file target (lambda (port) (dump-port minified port))))) sources targets)))) #t))))) (native-inputs - `(("uglify-js" ,uglify-js) + `(("uglifyjs" ,node-uglify-js) ;; NOTE: Make sure that this version of d3 is still valid when ;; upgrading the package. ("d3.v4.js" @@ -21067,14 +21185,14 @@ See e.g. Gentle (2003) @url{doi:10.1007/b97336}.") (define-public r-lhs (package (name "r-lhs") - (version "1.1.1") + (version "1.1.3") (source (origin (method url-fetch) (uri (cran-uri "lhs" version)) (sha256 (base32 - "1p4h03qlijs2a59wfd4rlvdlb9i87pw2zm8xsjd6yzz8vlm9yglh")))) + "1l861h76q5w0nbnbybhgg7hiw7fks677jakyd49n1whwvd48sfz4")))) (properties `((upstream-name . "lhs"))) (build-system r-build-system) (propagated-inputs `(("r-rcpp" ,r-rcpp))) @@ -21314,8 +21432,7 @@ the appropriate system call provided by the underlying operating system.") ;; These inputs are needed for vignettes (native-inputs `(("r-knitr" ,r-knitr) - ("r-rmarkdown" ,r-rmarkdown) - ("pandoc-citeproc" ,pandoc-citeproc))) + ("r-rmarkdown" ,r-rmarkdown))) (home-page "https://github.com/andreyshabalin/filematrix") (synopsis "File-backed matrix class with convenient read and write access") (description @@ -21419,6 +21536,11 @@ the @code{aroma.affymetrix} package.") "08xv8b3c81nf54viyr3w912al18483k5gfnjpg7bxbdfk70dfzbh")))) (properties `((upstream-name . "R.filesets"))) (build-system r-build-system) + (arguments + '(#:phases + (modify-phases %standard-phases + (add-after 'unpack 'set-HOME + (lambda _ (setenv "HOME" "/tmp")))))) (propagated-inputs `(("r-digest" ,r-digest) ("r-r-cache" ,r-r-cache) @@ -23198,14 +23320,14 @@ PDF or PostScript.") (define-public r-influencer (package (name "r-influencer") - (version "0.1.0") + (version "0.1.0.1") (source (origin (method url-fetch) (uri (cran-uri "influenceR" version)) (sha256 (base32 - "12p9362hkndlnz1rd8j2rykg57kbm6l7ks60by3rd25xg50k5jag")))) + "0rj7rm236vn3v8302nwl12s0kvpv6xpdbm3q3gxk7vgwfl8nzi33")))) (properties `((upstream-name . "influenceR"))) (build-system r-build-system) (propagated-inputs @@ -23552,14 +23674,14 @@ programming} (OOP) using R Reference Class.") (define-public r-proxyc (package (name "r-proxyc") - (version "0.2.0") + (version "0.2.1") (source (origin (method url-fetch) (uri (cran-uri "proxyC" version)) (sha256 (base32 - "08h79wzk8hp5yn3sxy1jcd1yljj25s7fac96l2jqavwd026y6j3l")))) + "1j8zsxdnpi8bywd7hhm47icgl1jhfyd8myj78bqgk7warai6m3iq")))) (properties `((upstream-name . "proxyC"))) (build-system r-build-system) (propagated-inputs @@ -24048,14 +24170,14 @@ Complete access to optimized C functions is made available with (define-public r-openmx (package (name "r-openmx") - (version "2.19.6") + (version "2.19.8") (source (origin (method url-fetch) (uri (cran-uri "OpenMx" version)) (sha256 (base32 - "0iv8fidmj074qbzvf0f6vj0h4i37x1d40ci9hkgyqvbnglwcnccy")))) + "0q37mwxqhgdi05rwdfwfapgazfp541xsvw3yskf21lv11y2yjjyb")))) (properties `((upstream-name . "OpenMx"))) (build-system r-build-system) (propagated-inputs @@ -24542,14 +24664,14 @@ documents, Shiny applications, Plumber APIs, plots, and static web content.") (for-each (lambda (source target) (format #t "Processing ~a --> ~a~%" source target) - (let ((minified (open-pipe* OPEN_READ "uglify-js" source))) + (let ((minified (open-pipe* OPEN_READ "uglifyjs" source))) (call-with-output-file target (lambda (port) (dump-port minified port))))) sources targets)))) #t))))) (native-inputs - `(("uglify-js" ,uglify-js) + `(("uglifyjs" ,node-uglify-js) ;; They actually use version 1.11.1, but this more recent version ;; should be just fine. ("js-jquery" @@ -24668,8 +24790,7 @@ recommendations for developers.") (properties `((upstream-name . "loo"))) (build-system r-build-system) (inputs - `(("pandoc" ,pandoc) - ("pandoc-citeproc" ,pandoc-citeproc))) + `(("pandoc" ,pandoc))) (propagated-inputs `(("r-checkmate" ,r-checkmate) ("r-matrixstats" ,r-matrixstats))) @@ -24757,8 +24878,7 @@ need to derive the partial derivatives.") (properties `((upstream-name . "rstanarm"))) (build-system r-build-system) (inputs - `(("pandoc" ,pandoc) - ("pandoc-citeproc" ,pandoc-citeproc))) + `(("pandoc" ,pandoc))) (propagated-inputs `(("r-bayesplot" ,r-bayesplot) ("r-bh" ,r-bh) @@ -25752,20 +25872,21 @@ including means, variances, intervals, and highest density regions.") (define-public r-posterior (package (name "r-posterior") - (version "1.0.1") + (version "1.1.0") (source (origin (method url-fetch) (uri (cran-uri "posterior" version)) (sha256 (base32 - "000k2sih7r89nmw3nwndx5jljcvkyr61b96mdkqrw83rs74lnh6f")))) + "1lpldkkkxv94dr30q5wb5qr61qrgp9shqnskgwriigy1phnjdxpg")))) (properties `((upstream-name . "posterior"))) (build-system r-build-system) (propagated-inputs `(("r-abind" ,r-abind) ("r-checkmate" ,r-checkmate) ("r-distributional" ,r-distributional) + ("r-matrixstats" ,r-matrixstats) ("r-pillar" ,r-pillar) ("r-rlang" ,r-rlang) ("r-tensora" ,r-tensora) @@ -25798,14 +25919,14 @@ inference diagnostics. (define-public r-brms (package (name "r-brms") - (version "2.16.0") + (version "2.16.1") (source (origin (method url-fetch) (uri (cran-uri "brms" version)) (sha256 (base32 - "14ykj7h0pzyzsyd1c46ybapsz3aqnffjih5hm7khfa5jk05wbs7a")))) + "1i0vkkfziac29vncw4igja5m7a6rhw9rqwifrw3y47q6zgczp7kl")))) (properties `((upstream-name . "brms"))) (build-system r-build-system) (propagated-inputs @@ -26719,14 +26840,14 @@ for linear mixed models (AIREML).") (define-public r-cpp11 (package (name "r-cpp11") - (version "0.3.1") + (version "0.4.0") (source (origin (method url-fetch) (uri (cran-uri "cpp11" version)) (sha256 (base32 - "1w2s057xbiasa1c3563gbznazs3lqk71zbdjmwnh5jy50wdl53a7")))) + "11qyliiw2qrac56mq5h9v7gy3dvwjj1i26pvygwbpprhvh3zss0p")))) (properties `((upstream-name . "cpp11"))) (build-system r-build-system) (native-inputs `(("r-knitr" ,r-knitr))) @@ -27001,14 +27122,14 @@ censored data.") (define-public r-flexsurv (package (name "r-flexsurv") - (version "2.0") + (version "2.1") (source (origin (method url-fetch) (uri (cran-uri "flexsurv" version)) (sha256 (base32 - "0vshsijqlzsz0xh426vsswpai1v5c990ggyniqqzsjbg3mn8dbl9")))) + "0kwij9nkdvnsn1kn12fj3hjkd2qpgw7bdda4qad7basq5p6divlp")))) (properties `((upstream-name . "flexsurv"))) (build-system r-build-system) (propagated-inputs @@ -27615,14 +27736,14 @@ Design} (SFD) and to test their quality.") (define-public r-dials (package (name "r-dials") - (version "0.0.9") + (version "0.0.10") (source (origin (method url-fetch) (uri (cran-uri "dials" version)) (sha256 (base32 - "0g9wj2py4wz703rh4p7hk8qxqnkm7zyrypv4qz4vaqziazjsmxks")))) + "1vhqcfwgic01pkw0i3000fvqq9yxfzsv26c0psfjhxkkdcz8h2px")))) (properties `((upstream-name . "dials"))) (build-system r-build-system) (propagated-inputs @@ -28082,8 +28203,7 @@ use.") (native-inputs `(("r-knitr" ,r-knitr) ("r-rmarkdown" ,r-rmarkdown) - ("pandoc" ,pandoc) - ("pandoc-citeproc" ,pandoc-citeproc))) ; for vignettes + ("pandoc" ,pandoc))) (home-page "https://github.com/tidymodels/tidymodels") (synopsis "Tidy collection for modeling and statistical analysis") (description @@ -28695,13 +28815,13 @@ Services (AWS) Simple Storage Service (S3) REST API.") (define-public r-lgr (package (name "r-lgr") - (version "0.4.2") + (version "0.4.3") (source (origin (method url-fetch) (uri (cran-uri "lgr" version)) (sha256 (base32 - "0k4kacjk7swm3gmdpha1rg44xb29vzvhvx48jhpb78glj5c9phyr")))) + "18s92qyakhvp336kk2777ydypwfrfwfz6a1gqkq812zy3kcb4mcc")))) (build-system r-build-system) (propagated-inputs `(("r-r6" ,r-r6))) @@ -28719,13 +28839,13 @@ well as email and push notifications.") (define-public r-mlr3measures (package (name "r-mlr3measures") - (version "0.3.1") + (version "0.4.0") (source (origin (method url-fetch) (uri (cran-uri "mlr3measures" version)) (sha256 (base32 - "18jk4kdj9771r16smz7xhmmiilcdg1qlavln5hrpvkx780zh3hj6")))) + "1qlqfan5akz42zwkcz3ncln6rd9c302dy4cyp7nx0jcafr5i459f")))) (build-system r-build-system) (propagated-inputs `(("r-checkmate" ,r-checkmate) @@ -28742,13 +28862,13 @@ are.") (define-public r-mlr3misc (package (name "r-mlr3misc") - (version "0.9.3") + (version "0.9.4") (source (origin (method url-fetch) (uri (cran-uri "mlr3misc" version)) (sha256 (base32 - "0i3pngdqasajlwl9cmpqhrx0l6l1gi94kpiz61bm4c9dwkzjwn04")))) + "14lcpvxrrl68l3khmy5r266b7yjjlg97pz4xvha0ypx8hlpbqik2")))) (build-system r-build-system) (propagated-inputs `(("r-backports" ,r-backports) @@ -28856,14 +28976,14 @@ vector machines, and gradient boosting.") (define-public r-bbotk (package (name "r-bbotk") - (version "0.3.2") + (version "0.4.0") (source (origin (method url-fetch) (uri (cran-uri "bbotk" version)) (sha256 (base32 - "0bd9nxfgsj4ixpgky1mj6knb8l8nivvxpqpyw8vgpkj0za7gp4gr")))) + "09cw6z397laszsg5wsgpjh7jda74amqrcl2p25bgjg33ina2nvg7")))) (properties `((upstream-name . "bbotk"))) (build-system r-build-system) (propagated-inputs @@ -28886,18 +29006,19 @@ annealing.") (define-public r-mlr3tuning (package (name "r-mlr3tuning") - (version "0.8.0") + (version "0.9.0") (source (origin (method url-fetch) (uri (cran-uri "mlr3tuning" version)) (sha256 (base32 - "16rvsf0jf06yvalydbs7zzn2994hvvyfw975ydiyv3wy1qzgr8bv")))) + "0i428kdbak81j1wlwmdf9y40hqi63azhyny802ms2z04wl8lwnvs")))) (build-system r-build-system) (propagated-inputs `(("r-bbotk" ,r-bbotk) ("r-checkmate" ,r-checkmate) ("r-data-table" ,r-data-table) + ("r-digest" ,r-digest) ("r-lgr" ,r-lgr) ("r-mlr3" ,r-mlr3) ("r-mlr3misc" ,r-mlr3misc) @@ -29550,14 +29671,14 @@ text but not always easily handled by analysis algorithms. The (define-public r-striprtf (package (name "r-striprtf") - (version "0.5.2") + (version "0.5.3") (source (origin (method url-fetch) (uri (cran-uri "striprtf" version)) (sha256 (base32 - "1ra6aalalig6drsj26z9s24lmb10zssagqrvgqqi4358zbm8gwcd")))) + "0dqcsh3fb8j0mmmxvxjl77rryhmrjm7a3scqvk2xkgxk4xq6q316")))) (properties `((upstream-name . "striprtf"))) (build-system r-build-system) (propagated-inputs @@ -30109,14 +30230,14 @@ variability than the Poisson, but less than the negative binomial.") (define-public r-rjsonio (package (name "r-rjsonio") - (version "1.3-1.5") + (version "1.3-1.6") (source (origin (method url-fetch) (uri (cran-uri "RJSONIO" version)) (sha256 (base32 - "1dp9kdf0ca27br1wsq9pj7d55n601achpbzdzxhykzz531xhmjrl")))) + "17x0ayk7daprbc8w2hvb2jl9mfnw4dic9yc3sr5adcjqfzmcklc2")))) (properties `((upstream-name . "RJSONIO"))) (build-system r-build-system) (home-page "https://cran.r-project.org/package=RJSONIO") @@ -30405,14 +30526,14 @@ time zone manipulations.") (define-public r-vroom (package (name "r-vroom") - (version "1.5.4") + (version "1.5.5") (source (origin (method url-fetch) (uri (cran-uri "vroom" version)) (sha256 (base32 - "15gbr35pmbnxjy0la2h20c0vf64q69gk7k996gn8b5wn3klxvg7n")))) + "1zk5nk9y64lspwhsasb7d2yg8i6ihyg2slys1qqa6qpi1266hi8x")))) (properties `((upstream-name . "vroom"))) (build-system r-build-system) (propagated-inputs @@ -30566,14 +30687,14 @@ Apache2.") (define-public r-exactextractr (package (name "r-exactextractr") - (version "0.6.1") + (version "0.7.0") (source (origin (method url-fetch) (uri (cran-uri "exactextractr" version)) (sha256 (base32 - "1xnccadbj03h7m81ix5qn0hx918xc9hbxnzgv5lr3hf8b26i9wni")))) + "1fwbl0rn0990cs2rvvwjbflp9mall6hjkindpjmdcy6qafiviid6")))) (properties `((upstream-name . "exactextractr"))) (build-system r-build-system) (inputs `(("geos" ,geos))) @@ -30672,14 +30793,14 @@ object to and from disk.") (define-public r-rgeos (package (name "r-rgeos") - (version "0.5-5") + (version "0.5-8") (source (origin (method url-fetch) (uri (cran-uri "rgeos" version)) (sha256 (base32 - "086l0qk3p4jq23bs91c4a65x4qz99z0hy0vsnvfqfvppdzz0vajb")))) + "05539shf38slvq38pf92h9q57vmzn2vfqbirl3pbbvvc2j957cqd")))) (properties `((upstream-name . "rgeos"))) (build-system r-build-system) (inputs @@ -30730,19 +30851,20 @@ runs.") (define-public r-tfautograph (package (name "r-tfautograph") - (version "0.3.1") + (version "0.3.2") (source (origin (method url-fetch) (uri (cran-uri "tfautograph" version)) (sha256 (base32 - "1fgpvv330g61ghzhkwnzx04gd9l3d6x1vxd1xqslb05h5acagwqn")))) + "0fmaq1ggjyxgf2ss7qb8jk74sfwc3s1vc123pd5glclxcy1ib0j2")))) (properties `((upstream-name . "tfautograph"))) (build-system r-build-system) (inputs `(("tensorflow" ,tensorflow))) (propagated-inputs - `(("r-reticulate" ,r-reticulate))) + `(("r-backports" ,r-backports) + ("r-reticulate" ,r-reticulate))) (home-page "https://t-kalinowski.github.io/tfautograph/") (synopsis "Autograph R for Tensorflow") (description @@ -31137,6 +31259,50 @@ management services, including cost and usage reports, budgets, pricing, and more.") (license license:asl2.0))) +(define-public r-paws-developer-tools + (package + (name "r-paws-developer-tools") + (version "0.1.12") + (source + (origin + (method url-fetch) + (uri (cran-uri "paws.developer.tools" version)) + (sha256 + (base32 "16gb8g8s67al7qdd95fbigxqkih9a9p7slkyf3cga42wb6miiby2")))) + (properties `((upstream-name . "paws.developer.tools"))) + (build-system r-build-system) + (propagated-inputs + `(("r-paws-common" ,r-paws-common))) + (home-page "https://github.com/paws-r/paws") + (synopsis "Amazon Web Services developer tools services") + (description + "This package provides an interface to Amazon Web Services developer +tools services, including version control, continuous integration and +deployment, and more.") + (license license:asl2.0))) + +(define-public r-paws-end-user-computing + (package + (name "r-paws-end-user-computing") + (version "0.1.12") + (source + (origin + (method url-fetch) + (uri (cran-uri "paws.end.user.computing" version)) + (sha256 + (base32 "1xxsz86nx128sizym9np8vldzkbym0p3i6vcy94kq1y0cylaicv3")))) + (properties `((upstream-name . "paws.end.user.computing"))) + (build-system r-build-system) + (propagated-inputs + `(("r-paws-common" ,r-paws-common))) + (home-page "https://github.com/paws-r/paws") + (synopsis "Amazon Web Services end user computing services") + (description + "This package provides an interface to Amazon Web Services end user +computing services, including collaborative document editing, mobile intranet, +and more.") + (license license:asl2.0))) + (define-public r-paws-application-integration (package (name "r-paws-application-integration") @@ -31354,14 +31520,14 @@ functions-as-a-service, containers, batch processing, and more.") (define-public r-paws (package (name "r-paws") - (version "0.1.11") + (version "0.1.12") (source (origin (method url-fetch) (uri (cran-uri "paws" version)) (sha256 (base32 - "1pkwjdrziyh6bhpilx29zsv2nmv60z6fqxgx2kvjqvl8z36yqfhw")))) + "0kn1z045r106fwqcaz52hb02bhrcblh479cajfjiq480s1iljcw6")))) (properties `((upstream-name . "paws"))) (build-system r-build-system) (propagated-inputs @@ -31371,6 +31537,8 @@ functions-as-a-service, containers, batch processing, and more.") ("r-paws-cost-management" ,r-paws-cost-management) ("r-paws-customer-engagement" ,r-paws-customer-engagement) ("r-paws-database" ,r-paws-database) + ("r-paws-developer-tools" ,r-paws-developer-tools) + ("r-paws-end-user-computing" ,r-paws-end-user-computing) ("r-paws-machine-learning" ,r-paws-machine-learning) ("r-paws-management" ,r-paws-management) ("r-paws-networking" ,r-paws-networking) @@ -31442,14 +31610,14 @@ zoom/navigate any plot when called with any active plot.") (define-public r-zoolog (package (name "r-zoolog") - (version "0.4.0") + (version "0.4.1") (source (origin (method url-fetch) (uri (cran-uri "zoolog" version)) (sha256 (base32 - "1lgdr4hbpdh1b468i3l9msbj8wcd20m323lv5an9y6dnfb9pm986")))) + "1wxxxscw4ji4p4599vdw6vcrkqm0g75x1gh13m4758lb51wav9ks")))) (properties `((upstream-name . "zoolog"))) (build-system r-build-system) (propagated-inputs @@ -31843,3 +32011,55 @@ deleting and uploading forecast data, and downloading scores.") regression and obtain Bayesian inference of the model via the Markov Chain Monte Carlo approach implemented in JAGS.") (license license:gpl3+))) + +(define-public r-logger + (package + (name "r-logger") + (version "0.2.1") + (source + (origin + (method url-fetch) + (uri (cran-uri "logger" version)) + (sha256 + (base32 "0p607da2rdrfj9sbrrq9hpqp26nyj3imd1590c13bxskqfhv0sz8")))) + (properties `((upstream-name . "logger"))) + (build-system r-build-system) + (native-inputs `(("r-knitr" ,r-knitr))) + (home-page "https://daroczig.github.io/logger/") + (synopsis "Lightweight and flexible logging utility") + (description + "Inspired by the the @code{futile.logger} R package and @code{logging} +Python module, this utility provides a flexible and extensible way of +formatting and delivering log messages with low overhead.") + (license license:agpl3+))) + +(define-public r-ggh4x + (package + (name "r-ggh4x") + (version "0.2.0") + (source + (origin + (method url-fetch) + (uri (cran-uri "ggh4x" version)) + (sha256 + (base32 + "0gv9ckkdqbcjknzsv8h3955wnikawdfypr279v74hvwyq86af29r")))) + (properties `((upstream-name . "ggh4x"))) + (build-system r-build-system) + (propagated-inputs + `(("r-ggplot2" ,r-ggplot2) + ("r-gtable" ,r-gtable) + ("r-rlang" ,r-rlang) + ("r-scales" ,r-scales) + ("r-vctrs" ,r-vctrs))) + (native-inputs + `(("r-knitr" ,r-knitr))) + (home-page "https://github.com/teunbrand/ggh4x") + (synopsis "Extension for ggplot2") + (description "This package is a @code{ggplot2} extension. It provides some +utility functions that do not entirely fit within the grammar of graphics +concept. The package extends @code{ggpplots} facets through customisation, by +setting individual scales per panel, resizing panels and providing nested +facets. It also allows multiple colour, fill scales per plot and hosts a +smaller collection of stats, geoms and axis guides.") + (license license:expat))) |