diff options
Diffstat (limited to 'gnu/packages/cran.scm')
| -rw-r--r-- | gnu/packages/cran.scm | 277 |
1 files changed, 240 insertions, 37 deletions
diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index fccf0002a7..7a17f995db 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -17,7 +17,7 @@ ;;; Copyright © 2018 Marius Bakke <mbakke@fastmail.com> ;;; Copyright © 2018, 2019 Brett Gilio <brettg@gnu.org> ;;; Copyright © 2019 Nicolò Balzarotti <anothersms@gmail.com> -;;; Copyright © 2019, 2020, 2021 Wiktor Żelazny <wzelazny@vurv.cz> +;;; Copyright © 2019, 2020, 2021, 2022 Wiktor Żelazny <wzelazny@vurv.cz> ;;; Copyright © 2019 Arne Babenhauserheide <arne_bab@web.de> ;;; Copyright © 2019, 2020 Efraim Flashner <efraim@flashner.co.il> ;;; Copyright © 2020 Todor Kondić <tk.code@protonmail.com> @@ -1124,6 +1124,61 @@ isolated functions, also called crates, print to the console with their total size and can be easily tested locally before being sent to a remote.") (license license:gpl3))) +(define-public r-climaemet + (package + (name "r-climaemet") + (version "1.0.2") + (source (origin + (method url-fetch) + (uri (cran-uri "climaemet" version)) + (sha256 + (base32 + "1z0i8iz7f32kns8j1yb3sp2m0zhl4pgp4bf52aiqykjp9i791dqm")))) + (properties `((upstream-name . "climaemet"))) + (build-system r-build-system) + (propagated-inputs + (list r-dplyr + r-ggplot2 + r-httr + r-jsonlite + r-rappdirs + r-readr + r-rlang + r-tibble + r-tidyr)) + (native-inputs (list r-knitr)) + (home-page "https://ropenspain.github.io/climaemet/") + (synopsis "Climate AEMET Tools") + (description + "This package provides tools to download the climatic data of the Spanish +Meteorological Agency (AEMET) directly from R using their API and create +scientific graphs (climate charts, trend analysis of climate time series, +temperature and precipitation anomalies maps, warming stripes graphics, +climatograms, etc.).") + (license license:gpl3))) + +(define-public r-climatol + (package + (name "r-climatol") + (version "3.1.2") + (source (origin + (method url-fetch) + (uri (cran-uri "climatol" version)) + (sha256 + (base32 + "0p3nk4n7izj0cmmqd9apa1gix5lfdzp08ydy0n7rkl5kbkmrkb6n")))) + (properties `((upstream-name . "climatol"))) + (build-system r-build-system) + (propagated-inputs (list r-mapdata r-maps)) + (home-page "http://www.climatol.eu/") + (synopsis "Climate tools") + (description + "This package provides functions for the quality control, homogenization +and missing data infilling of climatological series, and to obtain +climatological summaries and grids from the results. Also functions to draw +wind-roses and Walter&Lieth climate diagrams are included.") + (license license:gpl2+))) + (define-public r-clipr (package (name "r-clipr") @@ -4015,6 +4070,26 @@ work well on small screens.") data store designed for maximum speed.") (license license:asl2.0))) +(define-public r-mapdata + (package + (name "r-mapdata") + (version "2.3.1") + (source (origin + (method url-fetch) + (uri (cran-uri "mapdata" version)) + (sha256 + (base32 + "1m2r4c8f7fp900g3sdjbfxxnxjla86hn75jd8hi96ms188p0j8b0")))) + (properties `((upstream-name . "mapdata"))) + (build-system r-build-system) + (propagated-inputs (list r-maps)) + (home-page "https://cran.r-project.org/package=mapdata") + (synopsis "Extra map databases") + (description + "This is a supplement to the @code{maps} package providing the larger +and/or higher-resolution databases.") + (license license:gpl2))) + (define-public r-maps (package (name "r-maps") @@ -4645,13 +4720,13 @@ and Francois (2011, JSS), and the book by Eddelbuettel (2013, Springer); see (define-public r-rcppde (package (name "r-rcppde") - (version "0.1.6") + (version "0.1.7") (source (origin (method url-fetch) (uri (cran-uri "RcppDE" version)) (sha256 (base32 - "1i9jj595nqpb16y22z2b8fcf0gq1fg0pbiisbd837p1cyw4nff69")))) + "1846pl9gxikycdvwfgy1gw41z0fx4ycjp5p4295v8k2pgvlqw8sa")))) (properties `((upstream-name . "RcppDE"))) (build-system r-build-system) (propagated-inputs @@ -5776,14 +5851,14 @@ data). Weighted versions of MLE, MME and QME are available.") (define-public r-energy (package (name "r-energy") - (version "1.7-10") + (version "1.7-11") (source (origin (method url-fetch) (uri (cran-uri "energy" version)) (sha256 (base32 - "19xyw5bkyzfk22gly2ca2nsznqnrhaq4a77727kr1k26bj3y8gal")))) + "04b55ckmaqbnlpifg4w7smvly03kqycklvbg9x8d4yf902q8z7y2")))) (build-system r-build-system) (propagated-inputs (list r-boot r-gsl r-rcpp)) @@ -6181,6 +6256,38 @@ to access PostgreSQL database systems.") ;; under the PostgreSQL license. (license license:gpl2))) +(define-public r-rpostgres + (package + (name "r-rpostgres") + (version "1.4.4") + (source + (origin + (method url-fetch) + (uri (cran-uri "RPostgres" version)) + (sha256 + (base32 + "1z6diaq4kwinl97d1v9cb96j8mrkj2s2v4ml1vykgy1jqi40dk69")))) + (properties `((upstream-name . "RPostgres"))) + (build-system r-build-system) + (inputs (list postgresql)) + (propagated-inputs + (list r-bit64 + r-blob + r-dbi + r-hms + r-lubridate + r-plogr + r-rcpp + r-withr)) + (native-inputs + (list pkg-config r-knitr)) + (home-page "https://rpostgres.r-dbi.org") + (synopsis "Rcpp Interface to PostgreSQL") + (description + "This package provides a fully @code{DBI}-compliant @code{Rcpp}-backed +interface to @code{PostgreSQL}, a relational database.") + (license license:gpl3))) + (define-public r-linprog (package (name "r-linprog") @@ -6269,14 +6376,14 @@ multivariate and 5 functional classification problems are included.") (define-public r-gower (package (name "r-gower") - (version "1.0.0") + (version "1.0.1") (source (origin (method url-fetch) (uri (cran-uri "gower" version)) (sha256 (base32 - "0p9qx9aafkdm7wibfwk59jzw6vspsff6zwp84bc40lg0myxbf737")))) + "1z0mhfp8xp7rk9i820pkvspm6mwih24g6b5rqs63m37sbs79ssi9")))) (build-system r-build-system) (home-page "https://github.com/markvanderloo/gower") (synopsis "Gower's distance") @@ -7367,14 +7474,14 @@ multivariate function estimation using smoothing splines.") (define-public r-cli (package (name "r-cli") - (version "3.4.1") + (version "3.5.0") (source (origin (method url-fetch) (uri (cran-uri "cli" version)) (sha256 (base32 - "0kklv5zy9rhly8fr7fdl3dlm3hr81yvbqd5cdz38b1lbzpxmwn0w")))) + "1p3gzq30f7hpr3v2s555z18r0y57zq2h03kijv7rl48lqzbnrjwc")))) (build-system r-build-system) (home-page "https://github.com/r-lib/cli#readme") (synopsis "Helpers for developing command line interfaces") @@ -7641,13 +7748,13 @@ iVAT).") (define-public r-xfun (package (name "r-xfun") - (version "0.35") + (version "0.36") (source (origin (method url-fetch) (uri (cran-uri "xfun" version)) (sha256 - (base32 "04x6y7f3f105fzxn2kzmvfz0zqf2v28g8aqnsln6q9n4lm74vz45")))) + (base32 "1vk930bn7rp2qp8yvmd9d3lgi10rgf20n62jr3lfwi6hf7jhs5x8")))) (build-system r-build-system) ;; knitr itself depends on xfun #; @@ -7813,6 +7920,28 @@ annotation file. This package is intended to be used as example data for packages that work with genomic data.") (license license:gpl2+))) +(define-public r-piton + (package + (name "r-piton") + (version "1.0.0") + (source + (origin + (method url-fetch) + (uri (cran-uri "piton" version)) + (sha256 + (base32 "1krf6zi238m275nxjlpyayv8y2drbgs2kg19dpkqm0lmlz5y5ar8")))) + (properties `((upstream-name . "piton"))) + (build-system r-build-system) + (propagated-inputs (list r-rcpp)) + (home-page "https://github.com/Ironholds/piton") + (synopsis "Parsing expression grammars in Rcpp") + (description + "This package provides a wrapper around the Parsing Expression Grammar +Template Library, a C++11 library for generating parsing expression grammars, +that makes it accessible within Rcpp. With this, developers can implement +their own grammars and easily expose them in R packages.") + (license license:expat))) + (define-public r-uuid (package (name "r-uuid") @@ -10928,14 +11057,14 @@ references and Rd files.") (define-public r-officer (package (name "r-officer") - (version "0.4.4") + (version "0.5.0") (source (origin (method url-fetch) (uri (cran-uri "officer" version)) (sha256 (base32 - "1h6fcqw4bg644lwr5jggphyxp2d0ycya9q869z8099a50gc6h03f")))) + "19kms5pjgb5mjqyqzgnpykd5divbkrs5apz8z27ivgw78iizsqh6")))) (build-system r-build-system) (propagated-inputs (list r-r6 r-uuid r-xml2 r-zip)) @@ -17380,6 +17509,33 @@ library.") profiling R code.") (license license:gpl3))) +(define-public r-prospectr + (package + (name "r-prospectr") + (version "0.2.6") + (source (origin + (method url-fetch) + (uri (cran-uri "prospectr" version)) + (sha256 + (base32 + "1p53hcgcs2p09zhc2n7byjzrgvcgz6w7q00mlsn4kmnz7l4p7rrm")))) + (properties `((upstream-name . "prospectr"))) + (build-system r-build-system) + (propagated-inputs + (list r-foreach + r-iterators + r-lifecycle + r-mathjaxr + r-rcpp + r-rcpparmadillo)) + (home-page "https://github.com/l-ramirez-lopez/prospectr") + (synopsis "Functions for processing and sample selection of spectroscopic data") + (description + "@code{prospectr} provides miscellaneous functions to preprocess +spectroscopic data and conduct representative sample selection, or calibration +sampling.") + (license license:expat))) + (define-public r-protviz (package (name "r-protviz") @@ -18961,6 +19117,26 @@ methods.") ;; Any version of the GPL (license license:gpl2+))) +(define-public r-unglue + (package + (name "r-unglue") + (version "0.1.0") + (source + (origin + (method url-fetch) + (uri (cran-uri "unglue" version)) + (sha256 + (base32 "0w8ld4xllx0lj1jz8i2sj92f8136hlwri1d8ldpg1ymxj7aw93vg")))) + (properties `((upstream-name . "unglue"))) + (build-system r-build-system) + (home-page "https://cran.r-project.org/package=unglue") + (synopsis "Extract matched substrings using a pattern") + (description + "This package lets you use syntax inspired by the package @code{glue} to +extract matched substrings in a more intuitive and compact way than by using +standard regular expressions.") + (license license:gpl3))) + (define-public r-untb (package (name "r-untb") @@ -20286,14 +20462,14 @@ package.") (define-public r-yulab-utils (package (name "r-yulab-utils") - (version "0.0.5") + (version "0.0.6") (source (origin (method url-fetch) (uri (cran-uri "yulab.utils" version)) (sha256 (base32 - "0sq5wc0mp84h6fs4wa2smvf7dcn0p0xarzb2ljvqc3p4vb2lvkbf")))) + "09bvj97xz9gishyhi1dzpjfl70v7xag8952fqfp60h18s6w52flp")))) (properties `((upstream-name . "yulab.utils"))) (build-system r-build-system) (home-page "https://cran.r-project.org/package=yulab.utils") @@ -24732,6 +24908,34 @@ dissimilarity useful for clustering mixed data, and, optionally, perform the clustering.") (license license:gpl2+))) +(define-public r-treemap + (package + (name "r-treemap") + (version "2.4-3") + (source + (origin + (method url-fetch) + (uri (cran-uri "treemap" version)) + (sha256 + (base32 "1fg8gygw38x7msn32barx2irvcv8flm6wqvipnbj1qkh9w89y3q4")))) + (properties `((upstream-name . "treemap"))) + (build-system r-build-system) + (propagated-inputs + (list r-colorspace + r-data-table + r-ggplot2 + r-gridbase + r-igraph + r-rcolorbrewer + r-shiny)) + (native-inputs (list r-knitr)) + (home-page "https://cran.r-project.org/package=treemap") + (synopsis "Treemap visualization") + (description + "A treemap is a space-filling visualization of hierarchical structures. +This package offers great flexibility to draw treemaps.") + (license license:gpl3+))) + (define-public r-acrosstic (package (name "r-acrosstic") @@ -27330,14 +27534,14 @@ output in R.") (define-public r-bdgraph (package (name "r-bdgraph") - (version "2.71") + (version "2.72") (source (origin (method url-fetch) (uri (cran-uri "BDgraph" version)) (sha256 (base32 - "1lihsbliq7f91ywdq5cabzd5fbyhb10h62ss3n2l7i2fdglb77d1")))) + "1kc3icd7glivbjlhl9fbmxqza5w2x000w0w8ii8np9gjrhdwrybw")))) (properties `((upstream-name . "BDgraph"))) (build-system r-build-system) (propagated-inputs @@ -28174,14 +28378,14 @@ Encyclopedia of Integer Sequences} (OEIS) in the function help page.") (define-public r-isoband (package (name "r-isoband") - (version "0.2.6") + (version "0.2.7") (source (origin (method url-fetch) (uri (cran-uri "isoband" version)) (sha256 (base32 - "18s3mdzl9y8v5fpvdy6iyqp3j57kw8bwhgan94373xjkaya61r17")))) + "0qfzkkvh4a97qlifhdqjgdnzmnph93qqyqsv5gg8cnxl8crj54vn")))) (properties `((upstream-name . "isoband"))) (build-system r-build-system) (native-inputs @@ -29935,14 +30139,14 @@ formal inference.") (define-public r-gaston (package (name "r-gaston") - (version "1.5.8") + (version "1.5.9") (source (origin (method url-fetch) (uri (cran-uri "gaston" version)) (sha256 (base32 - "1pv37csq3gvkld7hfxgbq72n35gx1wg3bvrcvzzzf0qsfb6g42cc")))) + "1f4pr5s4p4rw1smvsh2gwjxp7hh43j1fpadl286ma9i62kirpyq7")))) (properties `((upstream-name . "gaston"))) (build-system r-build-system) (inputs (list zlib)) @@ -30278,14 +30482,14 @@ censored data.") (define-public r-flexsurv (package (name "r-flexsurv") - (version "2.2") + (version "2.2.1") (source (origin (method url-fetch) (uri (cran-uri "flexsurv" version)) (sha256 (base32 - "0244amsyf2izih6008n2535r3ddksgdnys8pyslrcb1c09spmjrw")))) + "1xqsihvrb8b5mzkr3mhg0ydm8kkcw1k0kgp6ndyavw8yahl059as")))) (properties `((upstream-name . "flexsurv"))) (build-system r-build-system) (propagated-inputs @@ -31233,14 +31437,14 @@ thinking for the fun stuff.") (define-public r-tokenizers (package (name "r-tokenizers") - (version "0.2.3") + (version "0.3.0") (source (origin (method url-fetch) (uri (cran-uri "tokenizers" version)) (sha256 (base32 - "01s2bx35r8kc7c68jnhcbrk963v2mhd21gmf630w7i4xnx46nvb2")))) + "0a8wm4cff3hrll991h2rimw79kpf2jsn78y7yksdk8m18931wmr4")))) (properties `((upstream-name . "tokenizers"))) (build-system r-build-system) (propagated-inputs @@ -31297,20 +31501,20 @@ vignettes in all common formats.") (define-public r-tidytext (package (name "r-tidytext") - (version "0.3.4") + (version "0.4.0") (source (origin (method url-fetch) (uri (cran-uri "tidytext" version)) (sha256 (base32 - "0mk75wdiy4mixj1xlksw9ns4ajlj8ak90sgchjcg1zb90qp7gg56")))) + "1ywx4zhx1a0r1lyd11w3cbz33silpx5m1sk9rd3kvj21wvfdramk")))) (properties `((upstream-name . "tidytext"))) (build-system r-build-system) (propagated-inputs - (list r-dplyr + (list r-cli + r-dplyr r-generics - r-hunspell r-janeaustenr r-lifecycle r-matrix @@ -32499,13 +32703,13 @@ annealing.") (define-public r-mlr3tuning (package (name "r-mlr3tuning") - (version "0.17.1") + (version "0.17.2") (source (origin (method url-fetch) (uri (cran-uri "mlr3tuning" version)) (sha256 (base32 - "03habi7dm5xgwfb4zjn9nhvyym46qcljy31jz32fxalsap1mk9jb")))) + "1w08bwk843nfs3d810lnfh3wmd7gkq9141m7lcn9ail2x4ib91bb")))) (build-system r-build-system) (propagated-inputs (list r-bbotk @@ -34394,14 +34598,14 @@ Tensorflow graphs.") (define-public r-tensorflow (package (name "r-tensorflow") - (version "2.9.0") + (version "2.11.0") (source (origin (method url-fetch) (uri (cran-uri "tensorflow" version)) (sha256 (base32 - "12c6ndxx4g6fqjakpzp9pgl29ghswhqyr6q9jahpk0cawizh2znj")))) + "1nqb3vgsw1xrpi1skw6yqwgdri3i8d9np0jylzfj7plizx63z64b")))) (properties `((upstream-name . "tensorflow"))) (build-system r-build-system) (inputs (list tensorflow)) @@ -34425,19 +34629,18 @@ between them.") (define-public r-keras (package (name "r-keras") - (version "2.9.0") + (version "2.11.0") (source (origin (method url-fetch) (uri (cran-uri "keras" version)) (sha256 (base32 - "06513d1fp7cxk4v03xm9lhgj6xmp9dqqvw3lnzwbzjwdkfj948yc")))) + "19r11mlxpdl09f7sfwzflnjhx2a6jgm57hjzg81pk8kprk4w7lvp")))) (properties `((upstream-name . "keras"))) (build-system r-build-system) (propagated-inputs - (list r-ellipsis - r-generics + (list r-generics r-glue r-magrittr r-r6 |