diff options
Diffstat (limited to 'gnu/packages/cran.scm')
| -rw-r--r-- | gnu/packages/cran.scm | 1005 |
1 files changed, 997 insertions, 8 deletions
diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index e1fb1b6215..b7126518c1 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -2,6 +2,7 @@ ;;; Copyright © 2015, 2016, 2017, 2018 Ricardo Wurmus <rekado@elephly.net> ;;; Copyright © 2017 Roel Janssen <roel@gnu.org> ;;; Copyright © 2017 Tobias Geerinckx-Rice <me@tobias.gr> +;;; Copyright © 2017 Raoul Bonnal <ilpuccio.febo@gmail.com> ;;; ;;; This file is part of GNU Guix. ;;; @@ -32,6 +33,32 @@ #:use-module (gnu packages statistics) #:use-module (gnu packages web)) +(define-public r-ape + (package + (name "r-ape") + (version "5.0") + (source + (origin + (method url-fetch) + (uri (cran-uri "ape" version)) + (sha256 + (base32 + "0q59pmxawz498cb9mv5m49lhiwxib8ak94yyydz7qg8b6lpd4bn3")))) + (build-system r-build-system) + (propagated-inputs + `(("r-lattice" ,r-lattice) + ("r-nlme" ,r-nlme) + ("r-rcpp" ,r-rcpp))) + (home-page "http://ape-package.ird.fr/") + (synopsis "Analyses of phylogenetics and evolution") + (description + "This package provides functions for reading, writing, plotting, and +manipulating phylogenetic trees, analyses of comparative data in a +phylogenetic framework, ancestral character analyses, analyses of +diversification and macroevolution, computing distances from DNA sequences, +and several other tools.") + (license license:gpl2+))) + (define-public r-colorspace (package (name "r-colorspace") @@ -1472,14 +1499,14 @@ imputations.") (define-public r-truncnorm (package (name "r-truncnorm") - (version "1.0-7") + (version "1.0-8") (source (origin (method url-fetch) (uri (cran-uri "truncnorm" version)) (sha256 (base32 - "1qac05z50618y4bw1d7yznsli1bv82s0g8h37iacrjrdkv87bmy7")))) + "0zn88wdd58223kibk085rhsikl4yhlrwiyq109hzjg06hy6lwmj9")))) (build-system r-build-system) (home-page "https://cran.r-project.org/web/packages/truncnorm/") (synopsis "Truncated normal distribution") @@ -1637,21 +1664,21 @@ simplifying cross-class interoperability.") (define-public r-performanceanalytics (package (name "r-performanceanalytics") - (version "1.4.3541") + (version "1.5.2") (source (origin (method url-fetch) (uri (cran-uri "PerformanceAnalytics" version)) (sha256 (base32 - "1czchsccsbdfjw743j6rm101q2q01pggyl8zmlva213pwm86zb3v")))) + "01bgm57z079g6r505w3bj293zkbd49fwa8sg55z87vizwavipml6")))) (properties `((upstream-name . "PerformanceAnalytics"))) (build-system r-build-system) (propagated-inputs - `(("r-xts" ,r-xts) + `(("r-quadprog" ,r-quadprog) + ("r-xts" ,r-xts) ("r-zoo" ,r-zoo))) - (native-inputs `(("gfortran" ,gfortran))) (home-page "http://r-forge.r-project.org/projects/returnanalytics/") (synopsis "Econometric tools for performance and risk analysis") (description "This is a collection of econometric functions for @@ -2139,14 +2166,14 @@ display.") (define-public r-pillar (package (name "r-pillar") - (version "1.1.0") + (version "1.2.1") (source (origin (method url-fetch) (uri (cran-uri "pillar" version)) (sha256 (base32 - "1gh3j2pbbf5y4d5nyqnlr0x27jjyvjjspcccmw61airs1n6rx8jq")))) + "1ryd7m570y6q3w71wd5dz042b3d0dv24g2rbkw1kdx0n6jj9gsbd")))) (build-system r-build-system) (propagated-inputs `(("r-cli" ,r-cli) @@ -2225,3 +2252,965 @@ meta-analysis of significance values including the methods of Edgington, Fisher, Stouffer, Tippett, and Wilkinson; a number of data-sets to replicate published results; and a routine for graphical display.") (license license:gpl2))) + +(define-public r-network + (package + (name "r-network") + (version "1.13.0") + (source + (origin + (method url-fetch) + (uri (cran-uri "network" version)) + (sha256 + (base32 + "11sg330xb7gcnl3f6lwhhjdabz6mk43828i2np635pqw4s4yl13s")))) + (build-system r-build-system) + (home-page "http://statnet.org/") + (synopsis "Classes for relational data") + (description + "This package provides tools to create and modify network objects. The +@code{network} class can represent a range of relational data types, and +supports arbitrary vertex/edge/graph attributes.") + (license license:gpl2+))) + +(define-public r-statnet-common + (package + (name "r-statnet-common") + (version "4.0.0") + (source + (origin + (method url-fetch) + (uri (cran-uri "statnet.common" version)) + (sha256 + (base32 + "0yw6l5b4qv0jqlg4zyczas7m12a5pyqghs6ydxy2f6v6vxkijvi0")))) + (properties + `((upstream-name . "statnet.common"))) + (build-system r-build-system) + (home-page "http://www.statnet.org") + (synopsis "R scripts and utilities used by the Statnet software") + (description "This package provides non-statistical utilities used by the +software developed by the Statnet Project.") + (license license:gpl3))) + +(define-public r-sna + (package + (name "r-sna") + (version "2.4") + (source + (origin + (method url-fetch) + (uri (cran-uri "sna" version)) + (sha256 + (base32 + "1ks8819qvpdfansfqj9p32s1rhvl26frvbi78m4rx1wd1qcv74i2")))) + (build-system r-build-system) + (propagated-inputs + `(("r-network" ,r-network) + ("r-statnet-common" ,r-statnet-common))) + (home-page "http://www.statnet.org") + (synopsis "Tools for social network analysis") + (description + "This package provides a range of tools for social network analysis, +including node and graph-level indices, structural distance and covariance +methods, structural equivalence detection, network regression, random graph +generation, and 2D/3D network visualization.") + (license license:gpl2+))) + +(define-public r-ttr + (package + (name "r-ttr") + (version "0.23-3") + (source + (origin + (method url-fetch) + (uri (cran-uri "TTR" version)) + (sha256 + (base32 + "07r62ngyzjl4aszdxnr3n6bnbcgcap32yhd430jsilicg8n06di1")))) + (properties `((upstream-name . "TTR"))) + (build-system r-build-system) + (propagated-inputs + `(("r-curl" ,r-curl) + ("r-xts" ,r-xts) + ("r-zoo" ,r-zoo))) + (native-inputs `(("gfortran" ,gfortran))) + (home-page "https://github.com/joshuaulrich/TTR") + (synopsis "Technical trading rules") + (description + "This package provides functions and data to construct technical trading +rules with R.") + (license license:gpl2))) + +(define-public r-leaps + (package + (name "r-leaps") + (version "3.0") + (source + (origin + (method url-fetch) + (uri (cran-uri "leaps" version)) + (sha256 + (base32 + "11gjmn1azrjw5xlvdb4gknj9985kck9x8zb9np1rnk2smp6pka2m")))) + (build-system r-build-system) + (native-inputs `(("gfortran" ,gfortran))) + (home-page "http://cran.r-project.org/web/packages/leaps/") + (synopsis "Regression subset selection") + (description + "This package provides tools for regression subset selection, including +exhaustive search.") + (license license:gpl2+))) + +(define-public r-splus2r + (package + (name "r-splus2r") + (version "1.2-2") + (source + (origin + (method url-fetch) + (uri (cran-uri "splus2R" version)) + (sha256 + (base32 + "0xrbj8vxy0pc6hl7m8abv71d3hjw47cl51s7j7priadyqczkq6sz")))) + (properties `((upstream-name . "splus2R"))) + (build-system r-build-system) + (native-inputs `(("gfortran" ,gfortran))) + (home-page "http://cran.r-project.org/web/packages/splus2R/") + (synopsis "Supplemental S-PLUS functionality in R") + (description + "Currently there are many functions in S-PLUS that are missing in R. To +facilitate the conversion of S-PLUS packages to R packages, this package +provides some missing S-PLUS functionality in R.") + (license license:gpl2))) + +(define-public r-ifultools + (package + (name "r-ifultools") + (version "2.0-4") + (source + (origin + (method url-fetch) + (uri (cran-uri "ifultools" version)) + (sha256 + (base32 + "0pv2msaa1rmj8csxdclzi2jwg9pfdvh87blj9j3xa3myisglq092")))) + (build-system r-build-system) + (propagated-inputs + `(("r-mass" ,r-mass) + ("r-splus2r" ,r-splus2r))) + (home-page "http://cran.r-project.org/web/packages/ifultools/") + (synopsis "Insightful research tools") + (description "This package provides C code used by the wmtsa, fractal, and +sapa R packages.") + (license license:gpl2))) + +(define-public r-sapa + (package + (name "r-sapa") + (version "2.0-2") + (source + (origin + (method url-fetch) + (uri (cran-uri "sapa" version)) + (sha256 + (base32 + "056xlh14dnzq4x7sbp7ff2k61jxy7110a742b502vz549qfrr5ds")))) + (build-system r-build-system) + (propagated-inputs + `(("r-ifultools" ,r-ifultools) + ("r-splus2r" ,r-splus2r))) + (home-page "http://cran.r-project.org/web/packages/sapa/") + (synopsis "Spectral analysis for physical applications") + (description "This package provides software for the book Spectral +Analysis for Physical Applications, Donald B. Percival and Andrew T. Walden, +Cambridge University Press, 1993.") + (license license:gpl2))) + +(define-public r-quantmod + (package + (name "r-quantmod") + (version "0.4-12") + (source + (origin + (method url-fetch) + (uri (cran-uri "quantmod" version)) + (sha256 + (base32 + "0y7gh0k1s10vdsfch8777avbhf99mc9crikvx7ahqrw0j631vmhq")))) + (build-system r-build-system) + (propagated-inputs + `(("r-curl" ,r-curl) + ("r-ttr" ,r-ttr) + ("r-xts" ,r-xts) + ("r-zoo" ,r-zoo))) + (home-page "http://cran.r-project.org/web/packages/quantmod/") + (synopsis "Quantitative financial modelling framework") + (description "This package provides a quantitative financial modelling +framework to allow users to specify, build, trade, and analyse quantitative +financial trading strategies.") + (license license:gpl3))) + +(define-public r-tseries + (package + (name "r-tseries") + (version "0.10-43") + (source + (origin + (method url-fetch) + (uri (cran-uri "tseries" version)) + (sha256 + (base32 + "1yjxhj7l1p2przczl6frggfcr5iwda9lbcsmh0y75gbbbps14yf2")))) + (build-system r-build-system) + (propagated-inputs + `(("r-quadprog" ,r-quadprog) + ("r-quantmod" ,r-quantmod) + ("r-zoo" ,r-zoo))) + (native-inputs + `(("gfortran" ,gfortran))) + (home-page "http://cran.r-project.org/web/packages/tseries/") + (synopsis "Time series analysis and computational finance") + (description + "This package provides functions relating to time series analysis and +computational finance.") + (license license:gpl2))) + +(define-public r-wmtsa + (package + (name "r-wmtsa") + (version "2.0-3") + (source + (origin + (method url-fetch) + (uri (cran-uri "wmtsa" version)) + (sha256 + (base32 + "1q436krz5p1f4a7a7sya6a9rh9x9mi8zzcgq66gbk9w9w4hcqcj6")))) + (build-system r-build-system) + (propagated-inputs + `(("r-ifultools" ,r-ifultools) + ("r-mass" ,r-mass) + ("r-splus2r" ,r-splus2r))) + (home-page "http://cran.r-project.org/web/packages/wmtsa/") + (synopsis "Wavelet methods for time series analysis") + (description + "This package provides software to accompany the book \"Wavelet Methods +for Time Series Analysis\", Donald B. Percival and Andrew T. Walden, Cambridge +University Press, 2000.") + (license license:gpl2))) + +(define-public r-tsa + (package + (name "r-tsa") + (version "1.01") + (source + (origin + (method url-fetch) + (uri (cran-uri "TSA" version)) + (sha256 + (base32 + "0cm97hwxm6vfgy9mc3kgwq6dnmn86p8a4avnfjbai048qnwrn6hx")))) + (properties `((upstream-name . "TSA"))) + (build-system r-build-system) + (propagated-inputs + `(("r-leaps" ,r-leaps) + ("r-locfit" ,r-locfit) + ("r-mgcv" ,r-mgcv) + ("r-tseries" ,r-tseries))) + (home-page "http://www.stat.uiowa.edu/~kchan/TSA.htm") + (synopsis "Time series analysis") + (description + "This package contains R functions and datasets detailed in the book +\"Time Series Analysis with Applications in R (second edition)\" by Jonathan +Cryer and Kung-Sik Chan.") + (license license:gpl2+))) + +(define-public r-extradistr + (package + (name "r-extradistr") + (version "1.8.8") + (source + (origin + (method url-fetch) + (uri (cran-uri "extraDistr" version)) + (sha256 + (base32 + "0ywn4qwnamv36l1hw27l9y5kh3v6ha5781wsv2bz6szqjgg7kdb3")))) + (properties `((upstream-name . "extraDistr"))) + (build-system r-build-system) + (propagated-inputs + `(("r-rcpp" ,r-rcpp))) + (home-page "https://github.com/twolodzko/extraDistr") + (synopsis "Additional univariate and multivariate distributions") + (description + "This package implements density, distribution functions, quantile +functions and random generation functions for a large number of univariate and +multivariate distributions.") + (license license:gpl2))) + +(define-public r-fractal + (package + (name "r-fractal") + (version "2.0-4") + (source + (origin + (method url-fetch) + (uri (cran-uri "fractal" version)) + (sha256 + (base32 + "18lr9z0gslvfc3z8vyj3krqj3bfhg60zv1fzinrwwkc4cpk1w7mp")))) + (build-system r-build-system) + (propagated-inputs + `(("r-ifultools" ,r-ifultools) + ("r-mass" ,r-mass) + ("r-sapa" ,r-sapa) + ("r-scatterplot3d" ,r-scatterplot3d) + ("r-splus2r" ,r-splus2r) + ("r-wmtsa" ,r-wmtsa))) + (home-page "http://cran.r-project.org/web/packages/fractal/") + (synopsis "Fractal time series modeling and analysis") + (description + "This package provides tools for stochastic fractal and deterministic +chaotic time series analysis.") + (license license:gpl2))) + +(define-public r-urca + (package + (name "r-urca") + (version "1.3-0") + (source + (origin + (method url-fetch) + (uri (cran-uri "urca" version)) + (sha256 + (base32 + "1akaqwf3fvvvx4sgfn641fd4sj51s0701pvfl6s5hnz2k0iwh732")))) + (build-system r-build-system) + (propagated-inputs `(("r-nlme" ,r-nlme))) + (native-inputs `(("gfortran" ,gfortran))) + (home-page "http://cran.r-project.org/web/packages/urca/") + (synopsis "Unit root and cointegration tests for time series data") + (description + "This package provides unit root and cointegration tests encountered in +applied econometric analysis.") + (license license:gpl2+))) + +(define-public r-cubature + (package + (name "r-cubature") + (version "1.3-11") + (source + (origin + (method url-fetch) + (uri (cran-uri "cubature" version)) + (sha256 + (base32 + "06f6gsvbb732p80r6hxvzh4ik546icxfvx21dyh65ypmw3kgm64k")))) + (build-system r-build-system) + (propagated-inputs + `(("r-rcpp" ,r-rcpp))) + (home-page "https://github.com/bnaras/cubature") + (synopsis "Adaptive multivariate integration over hypercubes") + (description + "This package is an R wrapper around the cubature C library for adaptive +multivariate integration over hypercubes. This version provides both +@code{hcubature} and @code{pcubature} routines in addition to a vector +interface.") + ;; The included cubature C library is released under GPLv2+, but the + ;; wrapper declares the license to be GPLv3+. + (license (list license:gpl2+ license:gpl3+)))) + +(define-public r-trend + (package + (name "r-trend") + (version "1.1.0") + (source + (origin + (method url-fetch) + (uri (cran-uri "trend" version)) + (sha256 + (base32 + "06yifqbsvxbmk5gld4z2nnyhf59v8ks5xjwacmb25mv9r6bn388b")))) + (build-system r-build-system) + (propagated-inputs + `(("r-extradistr" ,r-extradistr))) + (native-inputs + `(("gfortran" ,gfortran))) + (home-page "http://cran.r-project.org/web/packages/trend/") + (synopsis "Non-parametric trend tests and change-point detection") + (description + "The analysis of environmental data often requires the detection of +trends and change-points. This package includes tests for trend +detection (Cox-Stuart Trend Test, Mann-Kendall Trend Test, (correlated) +Hirsch-Slack Test, partial Mann-Kendall Trend Test, multivariate (multisite) +Mann-Kendall Trend Test, (Seasonal) Sen's slope, partial Pearson and Spearman +correlation trend test), change-point detection (Lanzante's test procedures, +Pettitt's test, Buishand Range Test, Buishand U Test, Standard Normal +Homogeinity Test), detection of non-randomness (Wallis-Moore Phase Frequency +Test, Bartels rank von Neumann's ratio test, Wald-Wolfowitz Test) and the two +sample Robust Rank-Order Distributional Test.") + (license license:gpl3))) + +(define-public r-expm + (package + (name "r-expm") + (version "0.999-2") + (source + (origin + (method url-fetch) + (uri (cran-uri "expm" version)) + (sha256 + (base32 + "1mihl67kvv1xv0figp25jkmwfn4iwkcx15cng2348y8gm6zybw9q")))) + (build-system r-build-system) + (propagated-inputs `(("r-matrix" ,r-matrix))) + (native-inputs `(("gfortran" ,gfortran))) + (home-page "http://r-forge.r-project.org/projects/expm/") + (synopsis "Tools for matrix exponentials and related quantities") + (description + "This package provides tools for the computation of the matrix +exponential, logarithm, square root, and related quantities.") + (license license:gpl2+))) + +(define-public r-complexplus + (package + (name "r-complexplus") + (version "2.1") + (source + (origin + (method url-fetch) + (uri (cran-uri "complexplus" version)) + (sha256 + (base32 + "16w9v7d1ckavqmr86l34frr37pkvdn0iqnb17ssb8xaggns5lgqx")))) + (build-system r-build-system) + (propagated-inputs + `(("r-expm" ,r-expm) + ("r-matrix" ,r-matrix))) + (home-page "http://cran.r-project.org/web/packages/complexplus/") + (synopsis "Functions of complex or real variables") + (description + "This package extends several functions to the complex domain, including +the matrix exponential and logarithm, and the determinant.") + (license license:gpl2))) + +(define-public r-phontools + (package + (name "r-phontools") + (version "0.2-2.1") + (source + (origin + (method url-fetch) + (uri (cran-uri "phonTools" version)) + (sha256 + (base32 + "01i481mhswsys3gpasw9gn6nxkfmi7bz46g5c84m13pg0cv8hxc7")))) + (properties `((upstream-name . "phonTools"))) + (build-system r-build-system) + (home-page "http://www.santiagobarreda.com/rscripts.html") + (synopsis "Tools for phonetic and acoustic analyses") + (description + "This package contains tools for the organization, display, and analysis +of the sorts of data frequently encountered in phonetics research and +experimentation, including the easy creation of IPA vowel plots, and the +creation and manipulation of WAVE audio files.") + (license license:bsd-2))) + +(define-public r-np + (package + (name "r-np") + (version "0.60-6") + (source + (origin + (method url-fetch) + (uri (cran-uri "np" version)) + (sha256 + (base32 + "1y72x5j9j9mcgcy2xizk31gl843hfkngxdn8s4qw7yhw2qj79hsr")))) + (build-system r-build-system) + (propagated-inputs + `(("r-boot" ,r-boot) + ("r-cubature" ,r-cubature) + ("r-quantreg" ,r-quantreg))) + (home-page "https://github.com/JeffreyRacine/R-Package-np") + (synopsis "Non-parametric kernel smoothing methods for mixed data types") + (description "This package provides non-parametric (and semi-parametric) +kernel methods that seamlessly handle a mix of continuous, unordered, and +ordered factor data types.") + ;; Any version of the GPL. + (license license:gpl3+))) + +(define-public r-powerplus + (package + (name "r-powerplus") + (version "3.1") + (source + (origin + (method url-fetch) + (uri (cran-uri "powerplus" version)) + (sha256 + (base32 + "0ayp6x34hkzgris4j3zbbs0r23n81bhww3wgfyy630ri4sk6brrn")))) + (build-system r-build-system) + (propagated-inputs + `(("r-complexplus" ,r-complexplus) + ("r-expm" ,r-expm) + ("r-mass" ,r-mass) + ("r-matrix" ,r-matrix) + ("r-phontools" ,r-phontools))) + (home-page "http://cran.r-project.org/web/packages/powerplus/") + (synopsis "Exponentiation operations") + (description + "This package provides tools for the computation of matrix and scalar +exponentiation.") + (license license:gpl2))) + +(define-public r-heatmaply + (package + (name "r-heatmaply") + (version "0.14.1") + (source + (origin + (method url-fetch) + (uri (cran-uri "heatmaply" version)) + (sha256 + (base32 + "03p2caclhfgqgpx3wwck5h06jy3mxgs05gjmwkb7hmwghkjh41jc")))) + (build-system r-build-system) + (propagated-inputs + `(("r-assertthat" ,r-assertthat) + ("r-colorspace" ,r-colorspace) + ("r-dendextend" ,r-dendextend) + ("r-ggplot2" ,r-ggplot2) + ("r-gplots" ,r-gplots) + ("r-htmlwidgets" ,r-htmlwidgets) + ("r-magrittr" ,r-magrittr) + ("r-plotly" ,r-plotly) + ("r-rcolorbrewer" ,r-rcolorbrewer) + ("r-reshape2" ,r-reshape2) + ("r-scales" ,r-scales) + ("r-seriation" ,r-seriation) + ("r-viridis" ,r-viridis) + ("r-webshot" ,r-webshot))) + (home-page "https://cran.r-project.org/package=heatmaply") + (synopsis "Interactive cluster heat maps using plotly") + (description + "This package enables you to create interactive cluster heatmaps that can +be saved as a stand-alone HTML file, embedded in R Markdown documents or in a +Shiny app, and made available in the RStudio viewer pane. Hover the mouse +pointer over a cell to show details or drag a rectangle to zoom. A heatmap is +a popular graphical method for visualizing high-dimensional data, in which a +table of numbers is encoded as a grid of colored cells. The rows and columns +of the matrix are ordered to highlight patterns and are often accompanied by +dendrograms.") + ;; Either version of the license. + (license (list license:gpl2 license:gpl3)))) + +(define-public r-cgdsr + (package + (name "r-cgdsr") + (version "1.2.10") + (source + (origin + (method url-fetch) + (uri (cran-uri "cgdsr" version)) + (sha256 + (base32 + "1xyhw7mhmjichr1l6f9y1qvfj9wm87kfbm87ji7lcwf36gxh5g23")))) + (build-system r-build-system) + (propagated-inputs + `(("r-r-methodss3" ,r-r-methodss3) + ("r-r-oo" ,r-r-oo))) + (home-page "https://github.com/cBioPortal/cgdsr") + (synopsis "R-based API for accessing the MSKCC Cancer Genomics Data Server") + (description + "This package provides a basic set of R functions for querying the Cancer +Genomics Data Server (CGDS), hosted by the Computational Biology Center at +Memorial-Sloan-Kettering Cancer Center (MSKCC).") + (license license:lgpl3))) + +(define-public r-import + (package + (name "r-import") + (version "1.1.0") + (source + (origin + (method url-fetch) + (uri (cran-uri "import" version)) + (sha256 + (base32 + "0blf9539rbfwcmw8zsb4k58slb4pdnc075v34vmyjw752fznhcji")))) + (build-system r-build-system) + (home-page "https://github.com/smbache/import") + (synopsis "Import mechanism for R") + (description + "This is an alternative mechanism for importing objects from packages. +The syntax allows for importing multiple objects from a package with a single +command in an expressive way. The import package bridges some of the gap +between using @code{library} (or @code{require}) and direct (single-object) +imports. Furthermore the imported objects are not placed in the current +environment. It is also possible to import objects from stand-alone @code{.R} +files.") + (license license:expat))) + +(define-public r-shinyace + (package + (name "r-shinyace") + (version "0.2.1") + (source + (origin + (method url-fetch) + (uri (cran-uri "shinyAce" version)) + (sha256 + (base32 + "0ycka8rsw0178q9klfid97vdn5cbyx3r778nis5s3dqipdyazdm9")))) + (properties `((upstream-name . "shinyAce"))) + (build-system r-build-system) + (propagated-inputs + `(("r-shiny" ,r-shiny))) + (home-page "http://cran.r-project.org/web/packages/shinyAce") + (synopsis "Ace editor bindings for Shiny") + (description + "This package provides Ace editor bindings to enable a rich text editing +environment within Shiny.") + (license license:expat))) + +(define-public r-radiant-data + (package + (name "r-radiant-data") + (version "0.8.1") + (source + (origin + (method url-fetch) + (uri (cran-uri "radiant.data" version)) + (sha256 + (base32 + "1ylina1jlrmvjkj8pwg0ip5jv1038vnzyckmf542xl7g11x8rvw1")) + (modules '((guix build utils))) + (snippet + '(begin + ;; Delete files that are under CC-NC-SA. + (delete-file-recursively "inst/app/tools/help") + #t)))) + (properties `((upstream-name . "radiant.data"))) + (build-system r-build-system) + (propagated-inputs + `(("r-base64enc" ,r-base64enc) + ("r-broom" ,r-broom) + ("r-car" ,r-car) + ("r-curl" ,r-curl) + ("r-dplyr" ,r-dplyr) + ("r-dt" ,r-dt) + ("r-ggplot2" ,r-ggplot2) + ("r-gridextra" ,r-gridextra) + ("r-import" ,r-import) + ("r-jsonlite" ,r-jsonlite) + ("r-knitr" ,r-knitr) + ("r-lubridate" ,r-lubridate) + ("r-magrittr" ,r-magrittr) + ("r-markdown" ,r-markdown) + ("r-pryr" ,r-pryr) + ("r-psych" ,r-psych) + ("r-readr" ,r-readr) + ("r-rmarkdown" ,r-rmarkdown) + ("r-rstudioapi" ,r-rstudioapi) + ("r-scales" ,r-scales) + ("r-shiny" ,r-shiny) + ("r-shinyace" ,r-shinyace) + ("r-tibble" ,r-tibble) + ("r-tidyr" ,r-tidyr))) + (home-page "https://github.com/radiant-rstats/radiant.data") + (synopsis "Data menu for Radiant: business analytics using R and Shiny") + (description + "The Radiant Data menu includes interfaces for loading, saving, viewing, +visualizing, summarizing, transforming, and combining data. It also contains +functionality to generate reproducible reports of the analyses conducted in +the application.") + (license license:agpl3))) + +(define-public r-algdesign + (package + (name "r-algdesign") + (version "1.1-7.3") + (source + (origin + (method url-fetch) + (uri (cran-uri "AlgDesign" version)) + (sha256 + (base32 + "0bl7mx4dnmkgs2x1fj7cqnrp7jx18mqwxyga0rzlniq12h8mc3fz")))) + (properties `((upstream-name . "AlgDesign"))) + (build-system r-build-system) + (home-page "https://github.com/jvbraun/AlgDesign") + (synopsis "Algorithmic experimental design") + (description + "This package provides tools to calculate exact and approximate theory +experimental designs for D, A, and I criteria. Very large designs may be +created. Experimental designs may be blocked or blocked designs created from +a candidate list, using several criteria. The blocking can be done when whole +and within plot factors interact.") + (license license:gpl2+))) + +(define-public r-signal + (package + (name "r-signal") + (version "0.7-6") + (source + (origin + (method url-fetch) + (uri (cran-uri "signal" version)) + (sha256 + (base32 + "1vsxramz5qd9q9s3vlqzmfdpmwl2rhlb2n904zw6f0fg0xxjfq3b")))) + (build-system r-build-system) + (propagated-inputs `(("r-mass" ,r-mass))) + (native-inputs `(("gfortran" ,gfortran))) + (home-page "http://cran.r-project.org/web/packages/signal/") + (synopsis "Signal processing") + (description + "This package provides a set of signal processing functions originally +written for Matlab and GNU Octave. It includes filter generation utilities, +filtering functions, resampling routines, and visualization of filter models. +It also includes interpolation functions.") + (license license:gpl2))) + +(define-public r-psych + (package + (name "r-psych") + (version "1.7.8") + (source + (origin + (method url-fetch) + (uri (cran-uri "psych" version)) + (sha256 + (base32 + "0daismb8pdk392vdy304hqx0m3jx62gx3a0hygjygc125rhfla7k")))) + (build-system r-build-system) + (propagated-inputs + `(("r-foreign" ,r-foreign) + ("r-lattice" ,r-lattice) + ("r-mnormt" ,r-mnormt) + ("r-nlme" ,r-nlme))) + (home-page "http://cran.r-project.org/web/packages/psych") + (synopsis "Procedures for psychological, psychometric, and personality research") + (description + "This package provides a general purpose toolbox for personality, +psychometric theory and experimental psychology. The functions are primarily +for multivariate analysis and scale construction using factor analysis, +principal component analysis, cluster analysis and reliability analysis, +although others provide basic descriptive statistics. It provides functions +for analyzing data at multiple levels within and between group statistics, +including correlations and factor analysis; functions for simulating and +testing particular item and test structures are included. Several functions +serve as a useful front end for structural equation modeling.") + (license license:gpl2+))) + +(define-public r-gsubfn + (package + (name "r-gsubfn") + (version "0.6-6") + (source + (origin + (method url-fetch) + (uri (cran-uri "gsubfn" version)) + (sha256 + (base32 + "196x4c3ihf4q3i0v7b1xa6jm8jjld2rsx00qz03n90wfnjdx5idv")))) + (build-system r-build-system) + (propagated-inputs `(("r-proto" ,r-proto))) + (home-page "http://gsubfn.googlecode.com") + (synopsis "Utilities for strings and function arguments.") + (description + "This package provides @code{gsubfn} which is like @code{gsub} but can +take a replacement function or certain other objects instead of the +replacement string. Matches and back references are input to the replacement +function and replaced by the function output. @code{gsubfn} can be used to +split strings based on content rather than delimiters and for quasi-perl-style +string interpolation. The package also has facilities for translating +formulas to functions and allowing such formulas in function calls instead of +functions.") + (license license:gpl2+))) + +(define-public r-sqldf + (package + (name "r-sqldf") + (version "0.4-11") + (source + (origin + (method url-fetch) + (uri (cran-uri "sqldf" version)) + (sha256 + (base32 + "0q12vsb53p2wchgp8wfz5bk08wfnm0jxjrakclj4jyy6x3a7ksff")))) + (build-system r-build-system) + (propagated-inputs + `(("r-chron" ,r-chron) + ("r-dbi" ,r-dbi) + ("r-gsubfn" ,r-gsubfn) + ("r-proto" ,r-proto) + ("r-rsqlite" ,r-rsqlite))) + (home-page "https://github.com/ggrothendieck/sqldf") + (synopsis "Manipulate R data frames using SQL") + (description + "The @code{sqldf} function is typically passed a single argument which is +an SQL select statement where the table names are ordinary R data frame names. +@code{sqldf} transparently sets up a database, imports the data frames into +that database, performs the SQL statement and returns the result using a +heuristic to determine which class to assign to each column of the returned +data frame. The @code{sqldf} or @code{read.csv.sql} functions can also be +used to read filtered files into R even if the original files are larger than +R itself can handle.") + (license license:gpl2))) + +(define-public r-abind + (package + (name "r-abind") + (version "1.4-5") + (source + (origin + (method url-fetch) + (uri (cran-uri "abind" version)) + (sha256 + (base32 + "0b1zd8jbnl6l292cr9rb50m09fy3ylxvzkpgi5lfb1nbzddcwfis")))) + (build-system r-build-system) + (home-page "http://cran.r-project.org/web/packages/abind/") + (synopsis "Combine multidimensional arrays") + (description + "This package provides tools to combine multidimensional arrays into a +single array. This is a generalization of @code{cbind} and @code{rbind}. It +works with vectors, matrices, and higher-dimensional arrays. It also provides +the functions @code{adrop}, @code{asub}, and @code{afill} for manipulating, +extracting and replacing data in arrays.") + (license license:lgpl2.0+))) + +(define-public r-prroc + (package + (name "r-prroc") + (version "1.3") + (source + (origin + (method url-fetch) + (uri (cran-uri "PRROC" version)) + (sha256 + (base32 + "03hvh92lq4i4w4mla9bvwrwb4626f4hvlxgdn57hamp70960vjyc")))) + (properties `((upstream-name . "PRROC"))) + (build-system r-build-system) + (home-page "http://cran.r-project.org/web/packages/PRROC/") + (synopsis "Precision-Recall and ROC curves for weighted and unweighted data") + (description + "This package computes the areas under the @dfn{precision-recall} (PR) +and ROC curve for weighted (e.g. soft-labeled) and unweighted data. In +contrast to other implementations, the interpolation between points of the PR +curve is done by a non-linear piecewise function. In addition to the areas +under the curves, the curves themselves can also be computed and plotted by a +specific S3-method.") + (license license:gpl3))) + +(define-public r-vim + (package + (name "r-vim") + (version "4.7.0") + (source + (origin + (method url-fetch) + (uri (cran-uri "VIM" version)) + (sha256 + (base32 + "1vjcs5wvjv94ln01d94h9rs4j50d3ky4n26mm3prgh13raylrmnd")))) + (properties `((upstream-name . "VIM"))) + (build-system r-build-system) + (propagated-inputs + `(("r-car" ,r-car) + ("r-colorspace" ,r-colorspace) + ("r-data-table" ,r-data-table) + ("r-e1071" ,r-e1071) + ("r-laeken" ,r-laeken) + ("r-mass" ,r-mass) + ("r-nnet" ,r-nnet) + ("r-rcpp" ,r-rcpp) + ("r-robustbase" ,r-robustbase) + ("r-sp" ,r-sp) + ("r-vcd" ,r-vcd))) + (home-page "https://github.com/alexkowa/VIM") + (synopsis "Visualization and imputation of missing values") + (description + "This package provides tools for the visualization of missing and/or +imputed values are introduced, which can be used for exploring the data and +the structure of the missing and/or imputed values. Depending on this +structure of the missing values, the corresponding methods may help to +identify the mechanism generating the missing values and allows to explore the +data including missing values. In addition, the quality of imputation can be +visually explored using various univariate, bivariate, multiple and +multivariate plot methods.") + (license license:gpl2+))) + +(define-public r-fnn + (package + (name "r-fnn") + (version "1.1") + (source + (origin + (method url-fetch) + (uri (cran-uri "FNN" version)) + (sha256 + (base32 + "1kncmiaraq1mrykb9fj3fsxswabk3l71fnp1vks0x9aay5xfk8mj")))) + (properties `((upstream-name . "FNN"))) + (build-system r-build-system) + (home-page "https://cran.r-project.org/web/packages/FNN") + (synopsis "Fast nearest neighbor search algorithms and applications") + (description + "This package provides cover-tree and kd-tree fast k-nearest neighbor +search algorithms. Related applications including KNN classification, +regression and information measures are implemented.") + ;; The DESCRIPTION file erroneously states that GPL version 2.1 or + ;; later can be used. + (license license:gpl2+))) + +(define-public r-smoother + (package + (name "r-smoother") + (version "1.1") + (source + (origin + (method url-fetch) + (uri (cran-uri "smoother" version)) + (sha256 + (base32 + "0nqr1bvlr5bnasqg74zmknjjl4x28kla9h5cxpga3kq5z215pdci")))) + (build-system r-build-system) + (propagated-inputs + `(("r-ttr" ,r-ttr))) + (home-page "http://cran.r-project.org/web/packages/smoother") + (synopsis "Functions relating to the smoothing of numerical data") + (description + "This package provides a collection of methods for smoothing numerical +data, commencing with a port of the Matlab gaussian window smoothing function. +In addition, several functions typically used in smoothing of financial data +are included.") + (license license:gpl2))) + +(define-public r-riverplot + (package + (name "r-riverplot") + (version "0.6") + (source + (origin + (method url-fetch) + (uri (cran-uri "riverplot" version)) + (sha256 + (base32 + "0q1icpny8nkxyjhawyjzwrw8qlz0ayn2xyrsqrm4vkxyv6c9xk8z")))) + (build-system r-build-system) + (home-page "https://logfc.wordpress.com") + (synopsis "Sankey or ribbon plots") + (description + "Sankey plots are a type of diagram that is convenient to illustrate how +flow of information, resources etc. separates and joins, much like observing +how rivers split and merge. For example, they can be used to compare +different clusterings. This package provides an implementation of Sankey +plots for R.") + (license license:gpl2+))) |