diff options
Diffstat (limited to 'gnu/packages/cran.scm')
| -rw-r--r-- | gnu/packages/cran.scm | 117 |
1 files changed, 70 insertions, 47 deletions
diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index ecfc053017..e8b635ac16 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -1559,15 +1559,20 @@ colors are provided.") (define-public r-glue (package (name "r-glue") - (version "1.3.2") + (version "1.4.0") (source (origin (method url-fetch) (uri (cran-uri "glue" version)) (sha256 (base32 - "0alklqcf68kmccssp4j7a7fv553pyqyy6mkkfslav83inppm4d3g")))) + "1hb9j2519jv9zgkgjb25hnqi22i7zxnaksqd16m4nxa1f6gl0v7a")))) (build-system r-build-system) + ;; knitr depends on glue, so we can't add knitr here to build the + ;; vignettes. + #; + (native-inputs + `(("r-knitr" ,r-knitr))) (home-page "https://github.com/tidyverse/glue") (synopsis "Interpreted string literals") (description @@ -1727,13 +1732,13 @@ you to rapidly iterate while developing a package.") (define-public r-rcpp (package (name "r-rcpp") - (version "1.0.4") + (version "1.0.4.6") (source (origin (method url-fetch) (uri (cran-uri "Rcpp" version)) (sha256 - (base32 "1m80pdhzi2p82db5xkbwc2m3fzv6df59955yj03nlq40fj7zx4nr")))) + (base32 "00mk23zmrqn1c4mk9d6csjcbnl12wd7yicjk2ikmw5dyvdfngbs5")))) (build-system r-build-system) (home-page "http://www.rcpp.org") (synopsis "Seamless R and C++ integration") @@ -4042,14 +4047,18 @@ iVAT).") (define-public r-xfun (package (name "r-xfun") - (version "0.12") + (version "0.13") (source (origin (method url-fetch) (uri (cran-uri "xfun" version)) (sha256 - (base32 "0sgh8kafi9x1glmmcp1ly827pm8q7fsfngbplr41fbb4nc9363df")))) + (base32 "03iyqgx9mmdbd3qih70qzijjqcdg7k7ps5r1y6q8praanx9qvnm3")))) (build-system r-build-system) + ;; knitr itself depends on xfun + #; + (native-inputs + `(("r-knitr" ,r-knitr))) (home-page "https://github.com/yihui/xfun") (synopsis "Miscellaneous functions") (description @@ -5387,14 +5396,14 @@ evaluated by the @dfn{Akaike Information Criterion} (AIC).") (define-public r-arules (package (name "r-arules") - (version "1.6-4") + (version "1.6-5") (source (origin (method url-fetch) (uri (cran-uri "arules" version)) (sha256 (base32 - "003c5cd3xzq39h7c19px077ygm0n1v7k83icy5zzrnkagyds2p8n")))) + "0bcvfn8lvcv74vv9z3kgg7yq5hm7wjqhmzadi55cbm8zxd76g84v")))) (build-system r-build-system) (propagated-inputs `(("r-matrix" ,r-matrix))) @@ -6500,14 +6509,14 @@ vice versa), or to deal with multiple declared missing values.") (define-public r-sjmisc (package (name "r-sjmisc") - (version "2.8.3") + (version "2.8.4") (source (origin (method url-fetch) (uri (cran-uri "sjmisc" version)) (sha256 (base32 - "0w8l9grmp4q775jrf4q6rxx36ld5daz9b0gdxyyh42xfihk6m62h")))) + "1ad7ca71w0v9ja4wb47aygczc987zz1lnjljhh2n497nzrpzzv64")))) (build-system r-build-system) (propagated-inputs `(("r-dplyr" ,r-dplyr) @@ -6517,6 +6526,8 @@ vice versa), or to deal with multiple declared missing values.") ("r-rlang" ,r-rlang) ("r-sjlabelled" ,r-sjlabelled) ("r-tidyselect" ,r-tidyselect))) + (native-inputs + `(("r-knitr" ,r-knitr))) (home-page "https://github.com/strengejacke/sjmisc") (synopsis "Data and variable transformation functions") (description @@ -7905,14 +7916,14 @@ console, resulting in an interactive editing environment.") (define-public r-survey (package (name "r-survey") - (version "3.37") + (version "4.0") (source (origin (method url-fetch) (uri (cran-uri "survey" version)) (sha256 (base32 - "1f31dvh48gzzan13pdrwh84ls35x9116095i7mdrcbrhz809r8dy")))) + "1q9x0s86s72gl43zj49gypg6jj2b78xjvxr4lmy5147s9h7z8lxh")))) (build-system r-build-system) (propagated-inputs `(("r-lattice" ,r-lattice) @@ -8285,14 +8296,14 @@ packages maintained by Torsten Hothorn.") (define-public r-multcomp (package (name "r-multcomp") - (version "1.4-12") + (version "1.4-13") (source (origin (method url-fetch) (uri (cran-uri "multcomp" version)) (sha256 (base32 - "14c2f10rz546w7ly5f4r6wnd07yj5gic38an17gxny1vf2nsff0b")))) + "1nszi22rcc551yc75h9cdfkdqsxw1rz30vadazmpyzihp1bh63yk")))) (build-system r-build-system) (propagated-inputs `(("r-codetools" ,r-codetools) @@ -8630,20 +8641,22 @@ results using @code{ggplot2}.") (define-public r-effectsize (package (name "r-effectsize") - (version "0.2.0") + (version "0.3.0") (source (origin (method url-fetch) (uri (cran-uri "effectsize" version)) (sha256 (base32 - "1liix8rf8xq3hzi7684bl0s20iflsq6g5mxr5k59wp2qwn1i6aww")))) + "0kijp4wamkidaxysc11dd4vhvnm4wnbi87871wcbwn27k5b6i5dg")))) (properties `((upstream-name . "effectsize"))) (build-system r-build-system) (propagated-inputs `(("r-bayestestr" ,r-bayestestr) ("r-insight" ,r-insight) ("r-parameters" ,r-parameters))) + (native-inputs + `(("r-knitr" ,r-knitr))) (home-page "https://github.com/easystats/effectsize") (synopsis "Indices of effect size and standardized parameters") (description @@ -8744,14 +8757,14 @@ back to file after modifications.") (define-public r-fs (package (name "r-fs") - (version "1.4.0") + (version "1.4.1") (source (origin (method url-fetch) (uri (cran-uri "fs" version)) (sha256 (base32 - "1ishdxrxy88w1lrn657a573wdra5v7xf1yfa1c4kss07rlynwrj7")))) + "0kksig9pk8aid9l6r250na8z8j9919jvs20lj0s6m9bcybgh74df")))) (build-system r-build-system) (native-inputs `(("pkg-config" ,pkg-config) @@ -8786,18 +8799,18 @@ terminals that do not support Unicode.") (define-public r-usethis (package (name "r-usethis") - (version "1.5.1") + (version "1.6.0") (source (origin (method url-fetch) (uri (cran-uri "usethis" version)) (sha256 (base32 - "07an5wbikilg7cb3q6x5aykw8dfqnjrc3wpfb7gjmy0d9fh20fcy")))) + "12iyimqyza752anj29wpfisl8nz5r25kfcqbssybg24nb4wyy146")))) (build-system r-build-system) (propagated-inputs - `(("r-clipr" ,r-clipr) - ("r-clisymbols" ,r-clisymbols) + `(("r-cli" ,r-cli) + ("r-clipr" ,r-clipr) ("r-crayon" ,r-crayon) ("r-curl" ,r-curl) ("r-desc" ,r-desc) @@ -8806,6 +8819,7 @@ terminals that do not support Unicode.") ("r-git2r" ,r-git2r) ("r-glue" ,r-glue) ("r-purrr" ,r-purrr) + ("r-rematch2" ,r-rematch2) ("r-rlang" ,r-rlang) ("r-rprojroot" ,r-rprojroot) ("r-rstudioapi" ,r-rstudioapi) @@ -9175,14 +9189,14 @@ experiments using ANOVA or mixed models.") (define-public r-lmertest (package (name "r-lmertest") - (version "3.1-1") + (version "3.1-2") (source (origin (method url-fetch) (uri (cran-uri "lmerTest" version)) (sha256 (base32 - "0r2vvs3nl6p8xla3gd943khb4ixp0alvspqpnz2y6n3wk8zgh3jj")))) + "1qkdxx5sri65zgpb9gw4nkfkdam51kgy4hxclk5c40yk7y3p0n1q")))) (properties `((upstream-name . "lmerTest"))) (build-system r-build-system) (propagated-inputs @@ -12067,14 +12081,14 @@ users of rARPACK are advised to switch to the RSpectra package.") (define-public r-compositions (package (name "r-compositions") - (version "1.40-4") + (version "1.40-5") (source (origin (method url-fetch) (uri (cran-uri "compositions" version)) (sha256 (base32 - "0z40llyij3cc80ac1vzzrpykk6ysp89bn6dyyh40fbnc4anwx69a")))) + "0l9ayz2nb2wqhl7v9hkfl7pd950ba0h6hma8zqncbcxh6xh2k7l7")))) (build-system r-build-system) (propagated-inputs `(("r-bayesm" ,r-bayesm) @@ -12817,14 +12831,14 @@ can be used with function approximation, eligibility traces (Singh & Sutton, (define-public r-lemon (package (name "r-lemon") - (version "0.4.3") + (version "0.4.4") (source (origin (method url-fetch) (uri (cran-uri "lemon" version)) (sha256 (base32 - "0wsn5bfg10wq4dnrgpyraz2bzx9p19c7hf1pwj3h4zmpqfgsdbpw")))) + "0m9hqwi709j9iwsxn8jh63741jiyr7ppwgqaw2zkv285p3m5wvd5")))) (build-system r-build-system) (propagated-inputs `(("r-ggplot2" ,r-ggplot2) @@ -12833,6 +12847,7 @@ can be used with function approximation, eligibility traces (Singh & Sutton, ("r-knitr" ,r-knitr) ("r-lattice" ,r-lattice) ("r-plyr" ,r-plyr) + ("r-rlang" ,r-rlang) ("r-scales" ,r-scales))) (home-page "https://github.com/stefanedwards/lemon") (synopsis "Freshen up your ggplot2 plots") @@ -13113,21 +13128,23 @@ classes.") (define-public r-classint (package (name "r-classint") - (version "0.4-2") + (version "0.4-3") (source (origin (method url-fetch) (uri (cran-uri "classInt" version)) (sha256 (base32 - "0w980hrw8sgfdfyd5dsimalq7gwhvqm7507abk7k363pvgks23dv")))) + "1b1lqhpzxm6b8pza8l3s0cxy74mm9y45lcd3354i2v3bg8m7mply")))) (properties `((upstream-name . "classInt"))) (build-system r-build-system) (propagated-inputs `(("r-class" ,r-class) ("r-e1071" ,r-e1071) ("r-kernsmooth" ,r-kernsmooth))) - (native-inputs `(("gfortran" ,gfortran))) + (native-inputs + `(("gfortran" ,gfortran) + ("r-knitr" ,r-knitr))) (home-page "https://github.com/r-spatial/classInt/") (synopsis "Choose univariate class intervals") (description @@ -13138,14 +13155,14 @@ univariate class intervals for mapping or other graphics purposes.") (define-public r-spdata (package (name "r-spdata") - (version "0.3.3") + (version "0.3.5") (source (origin (method url-fetch) (uri (cran-uri "spData" version)) (sha256 (base32 - "1v66qkvsx77hvv5c78v760yp0hknf7xzcjir2ri3ha456mz79yl5")))) + "09l9j1vjbfyc8mikb8kliqmdjkg4xigq3zhdx98mv51flh5q87lh")))) (properties `((upstream-name . "spData"))) (build-system r-build-system) (propagated-inputs @@ -13215,14 +13232,14 @@ tessellation.") (define-public r-sf (package (name "r-sf") - (version "0.9-0") + (version "0.9-1") (source (origin (method url-fetch) (uri (cran-uri "sf" version)) (sha256 (base32 - "117r9l3v7nkdj9bfy6qr0yz0gd5bv0pwnkc9vk2gv3xqj0h1fpf6")))) + "1qghrskqwwlwxmmvkv7knhlr1a32ngyimycasy5gfazgviljsfn4")))) (build-system r-build-system) (inputs `(("gdal" ,gdal) @@ -15960,14 +15977,14 @@ in pipelines.") (define-public r-parameters (package (name "r-parameters") - (version "0.6.0") + (version "0.6.1") (source (origin (method url-fetch) (uri (cran-uri "parameters" version)) (sha256 (base32 - "0zin3ikc013hc713n5zs0dbhc3m4nfw1vhc3924z0mrww8r241xn")))) + "0mylxkf1y6mk4kf6c57x102sf4c800pfasjcfbf1hnsh6ya0m6dy")))) (properties `((upstream-name . "parameters"))) (build-system r-build-system) (propagated-inputs @@ -16191,14 +16208,14 @@ are noisy or are discontinuous at the solution.") (define-public r-txtplot (package (name "r-txtplot") - (version "1.0-3") + (version "1.0-4") (source (origin (method url-fetch) (uri (cran-uri "txtplot" version)) (sha256 (base32 - "1949ab1bzvysdb79g8x1gaknj0ih3d6g63pv9512h5m5l3a6c31h")))) + "00sriml48y70j18jz235dsfm5x3a81bnzskfp3hnv6cbjwwsmca4")))) (build-system r-build-system) (home-page "https://cran.r-project.org/web/packages/txtplot/") (synopsis "Text-based plotting") @@ -17112,17 +17129,19 @@ See e.g. Gentle (2003) @url{doi:10.1007/b97336}.") (define-public r-lhs (package (name "r-lhs") - (version "1.0.1") + (version "1.0.2") (source (origin (method url-fetch) (uri (cran-uri "lhs" version)) (sha256 (base32 - "0lzaqr7xi3ckln5nglv5xf5njm359slpz1jc6s02hpsqdw6armd4")))) + "0n0i1hr9gmc0hfcs2cvpjvdfgm6k26rhcq3q22r8ic0gfj953572")))) (properties `((upstream-name . "lhs"))) (build-system r-build-system) (propagated-inputs `(("r-rcpp" ,r-rcpp))) + (native-inputs + `(("r-knitr" ,r-knitr))) (home-page "https://github.com/bertcarnell/lhs") (synopsis "Latin Hypercube Samples") (description @@ -18790,14 +18809,14 @@ Edition), John Wiley and Sons.") (define-public r-anthropometry (package (name "r-anthropometry") - (version "1.13") + (version "1.14") (source (origin (method url-fetch) (uri (cran-uri "Anthropometry" version)) (sha256 (base32 - "1f568ri1s6psaby8y737vrkarbjg64v89d4jyw23hy17apdmszr8")))) + "0y52g15pcgs4b68sfczn6nnpdqsialsb4mq3wb9a2gba7qdcf76y")))) (properties `((upstream-name . "Anthropometry"))) (build-system r-build-system) (propagated-inputs @@ -18810,6 +18829,8 @@ Edition), John Wiley and Sons.") ("r-nnls" ,r-nnls) ("r-rgl" ,r-rgl) ("r-shapes" ,r-shapes))) + (native-inputs + `(("r-knitr" ,r-knitr))) (home-page "https://cran.r-project.org/web/packages/Anthropometry/") (synopsis "Statistical methods for anthropometric data") (description @@ -20804,19 +20825,21 @@ Encyclopedia of Integer Sequences} (OEIS) in the function help page.") (define-public r-isoband (package (name "r-isoband") - (version "0.2.0") + (version "0.2.1") (source (origin (method url-fetch) (uri (cran-uri "isoband" version)) (sha256 (base32 - "1r023s73qypnvpx18znr9ymylr022m90v65mz2jasn0a1kjrfcbq")))) + "1ndlnv4g9pbd02y50sx4ffg2ccwqbi7fm2v1lh22wdd8pq33d20q")))) (properties `((upstream-name . "isoband"))) (build-system r-build-system) (propagated-inputs `(("r-rcpp" ,r-rcpp) ("r-testthat" ,r-testthat))) + (native-inputs + `(("r-knitr" ,r-knitr))) (home-page "https://github.com/wilkelab/isoband") (synopsis "Generate isolines and isobands from regularly spaced elevation grids") (description @@ -20924,13 +20947,13 @@ carrying out convergence diagnostics and statistical and graphical analysis of (define-public r-httpcode (package (name "r-httpcode") - (version "0.2.0") + (version "0.3.0") (source (origin (method url-fetch) (uri (cran-uri "httpcode" version)) (sha256 (base32 - "06k853ihwzkcx4z3jzazpb03p91frqkwz18jy4fwr8j2nwyqbhgv")))) + "0xig0rvc81hg7mw0iq9s0an1nw24fg0kfs2p2n6dzhwl9w506fjr")))) (build-system r-build-system) (home-page "https://github.com/sckott/httpcode") (synopsis "HTTP status code helper") |