diff options
Diffstat (limited to 'gnu/packages/cran.scm')
| -rw-r--r-- | gnu/packages/cran.scm | 39 |
1 files changed, 39 insertions, 0 deletions
diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index ae8e9c5a47..458b141f91 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -15097,3 +15097,42 @@ datasets, developed and maintained by the Macosko lab. It relies on integrative non-negative matrix factorization to identify shared and dataset-specific factors.") (license license:gpl3))) + +(define-public r-harmony + ;; There are no tagged commits + (let ((commit "4d1653870d4dd70fff1807c182882db1fbf9af5a") + (revision "1")) + (package + (name "r-harmony") + (version (git-version "1.0" revision commit)) + (source + (origin + (method git-fetch) + (uri (git-reference + (url "https://github.com/immunogenomics/harmony") + (commit commit))) + (file-name (git-file-name name version)) + (sha256 + (base32 + "1gasdldr4aalr9h2q9kmm3y4i7azkgnhdn4bmvsszs7lg9xacw85")))) + (build-system r-build-system) + (propagated-inputs + `(("r-cowplot" ,r-cowplot) + ("r-dplyr" ,r-dplyr) + ("r-ggplot2" ,r-ggplot2) + ("r-irlba" ,r-irlba) + ("r-matrix" ,r-matrix) + ("r-rcpp" ,r-rcpp) + ("r-rcpparmadillo" ,r-rcpparmadillo) + ("r-rcppprogress" ,r-rcppprogress) + ("r-rlang" ,r-rlang) + ("r-tibble" ,r-tibble) + ("r-tidyr" ,r-tidyr))) + (home-page "https://github.com/immunogenomics/harmony") + (synopsis "Integration of single cell sequencing data") + (description + "This package provides an implementation of the Harmony algorithm for +single cell integration, described in Korsunsky et al +@url{doi.org/10.1101/461954}. The package includes a standalone Harmony +function and interfaces to external frameworks.") + (license license:gpl3)))) |