diff options
Diffstat (limited to 'gnu/packages/cran.scm')
| -rw-r--r-- | gnu/packages/cran.scm | 116 |
1 files changed, 105 insertions, 11 deletions
diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index 9eb54c0358..11d30815cf 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -1,5 +1,6 @@ ;;; GNU Guix --- Functional package management for GNU ;;; Copyright © 2015, 2016, 2017 Ricardo Wurmus <rekado@elephly.net> +;;; Copyright © 2017 Roel Janssen <roel@gnu.org> ;;; ;;; This file is part of GNU Guix. ;;; @@ -25,6 +26,7 @@ #:use-module (gnu packages gcc) #:use-module (gnu packages machine-learning) #:use-module (gnu packages maths) + #:use-module (gnu packages mpi) #:use-module (gnu packages perl) #:use-module (gnu packages statistics) #:use-module (gnu packages web)) @@ -92,13 +94,13 @@ error stream.") (define-public r-rcpp (package (name "r-rcpp") - (version "0.12.13") + (version "0.12.14") (source (origin (method url-fetch) (uri (cran-uri "Rcpp" version)) (sha256 - (base32 "1bm84yc48475plgsnnbvzi6nzkixpnfw8ry86ax63f9g524asw55")))) + (base32 "0qvyxggddyg87lza45hjl0a2prabdyshkqzkz418vi777zygqa6s")))) (build-system r-build-system) (home-page "http://www.rcpp.org") (synopsis "Seamless R and C++ integration") @@ -242,14 +244,14 @@ validation and filtering on the values, making options invisible or private.") (define-public r-circlize (package (name "r-circlize") - (version "0.4.1") + (version "0.4.2") (source (origin (method url-fetch) (uri (cran-uri "circlize" version)) (sha256 (base32 - "1w7i3jgxgq510axglzmw54ma9kq7k4c86i9ccndz10mrwc51fji0")))) + "0py82f5v25mi0s4626zbl5br1frdrj3diz2dakar1rz5yn956mdi")))) (build-system r-build-system) (propagated-inputs `(("r-colorspace" ,r-colorspace) @@ -318,14 +320,14 @@ rows, dropping names) to see if the modified versions are identical.") (define-public r-dendextend (package (name "r-dendextend") - (version "1.5.2") + (version "1.6.0") (source (origin (method url-fetch) (uri (cran-uri "dendextend" version)) (sha256 (base32 - "04jz58apibfrkjcrdmw2hmsav6qpb5cs6qdai81k1v1iznfcya42")))) + "0pichh08zi12lpxzc061dmv4smj6lizygd1xymln8wfz18sf7923")))) (build-system r-build-system) (propagated-inputs `(("r-fpc" ,r-fpc) @@ -601,6 +603,29 @@ and other distributions related to the eigenvalues of large Wishart matrices.") (license license:bsd-3))) +(define-public r-rmpi + (package + (name "r-rmpi") + (version "0.6-6") + (source (origin + (method url-fetch) + (uri (cran-uri "Rmpi" version)) + (sha256 + (base32 + "0fm6z049aaq2c9xagm8n64d9560hg9d8hyb0m359fii672nhkz6q")))) + (properties `((upstream-name . "Rmpi"))) + (build-system r-build-system) + (arguments + `(#:configure-flags '("--configure-args=\"--with-Rmpi-type=OPENMPI\""))) + (inputs + `(("openmpi" ,openmpi))) + (home-page "http://www.stats.uwo.ca/faculty/yu/Rmpi") + (synopsis "R interface to message-passing interface (MPI)") + (description + "This package provides an interface (wrapper) to MPI APIs. It also +provides an interactive R manager and worker environment.") + (license license:gpl2+))) + (define-public r-lmoments (package (name "r-lmoments") @@ -1059,14 +1084,14 @@ methods.") (define-public r-timedate (package (name "r-timedate") - (version "3012.100") + (version "3042.101") (source (origin (method url-fetch) (uri (cran-uri "timeDate" version)) (sha256 (base32 - "0cn4h23y2y2bbg62qgm79xx4cvfla5xbpmi9hbdvkvpmm5yfyqk2")))) + "0vcckaw1gqz3j4v69r9jn41vlmk5a5c7572xam1nl75ki5v4r3bc")))) (properties `((upstream-name . "timeDate"))) (build-system r-build-system) (home-page "https://www.rmetrics.org") @@ -1183,26 +1208,95 @@ classification and bagging for classification, regression and survival problems as well as resampling based estimators of prediction error.") (license license:gpl2+))) +(define-public r-psych + (package + (name "r-psych") + (version "1.7.8") + (source + (origin + (method url-fetch) + (uri (cran-uri "psych" version)) + (sha256 + (base32 + "0daismb8pdk392vdy304hqx0m3jx62gx3a0hygjygc125rhfla7k")))) + (build-system r-build-system) + (propagated-inputs + `(("r-foreign" ,r-foreign) + ("r-lattice" ,r-lattice) + ("r-mnormt" ,r-mnormt) + ("r-nlme" ,r-nlme))) + (home-page "http://cran.r-project.org/web/packages/psych/") + (synopsis "Procedures for psychological, psychometric, and personality research") + (description + "This package provides a general purpose toolbox for personality, +psychometric theory and experimental psychology. Functions are primarily for +multivariate analysis and scale construction using factor analysis, principal +component analysis, cluster analysis and reliability analysis, although others +provide basic descriptive statistics. Item Response Theory is done using +factor analysis of tetrachoric and polychoric correlations. Functions for +analyzing data at multiple levels include within and between group statistics, +including correlations and factor analysis. Functions for simulating and +testing particular item and test structures are included. Several functions +serve as a useful front end for structural equation modeling. Graphical +displays of path diagrams, factor analysis and structural equation models are +created using basic graphics.") + (license license:gpl2+))) + +(define-public r-broom + (package + (name "r-broom") + (version "0.4.3") + (source + (origin + (method url-fetch) + (uri (cran-uri "broom" version)) + (sha256 + (base32 + "119pc2jnxvm13cvd77c7d14p3bn68f4jm310vj3yfck40101n9if")))) + (build-system r-build-system) + (propagated-inputs + `(("r-dplyr" ,r-dplyr) + ("r-nlme" ,r-nlme) + ("r-plyr" ,r-plyr) + ("r-psych" ,r-psych) + ("r-reshape2" ,r-reshape2) + ("r-stringr" ,r-stringr) + ("r-tidyr" ,r-tidyr))) + (home-page "http://github.com/tidyverse/broom") + (synopsis "Convert statistical analysis objects into tidy data frames") + (description + "This package provides tools to convert statistical analysis objects from +R into tidy data frames, so that they can more easily be combined, reshaped +and otherwise processed with tools like @code{dplyr}, @code{tidyr} and +@code{ggplot2}. The package provides three S3 generics: @code{tidy}, which +summarizes a model's statistical findings such as coefficients of a +regression; @code{augment}, which adds columns to the original data such as +predictions, residuals and cluster assignments; and @code{glance}, which +provides a one-row summary of model-level statistics.") + (license license:expat))) + (define-public r-recipes (package (name "r-recipes") - (version "0.1.0") + (version "0.1.1") (source (origin (method url-fetch) (uri (cran-uri "recipes" version)) (sha256 (base32 - "0rydk403qihxmcv3zz323r3ywk4g1v7ibvj452rxhm0z22sqk9kb")))) + "0id46c7iaf49miw4kxpidsbg3hdywav43n1lh2zd1vg5946bzg04")))) (build-system r-build-system) (propagated-inputs - `(("r-ddalpha" ,r-ddalpha) + `(("r-broom" ,r-broom) + ("r-ddalpha" ,r-ddalpha) ("r-dimred" ,r-dimred) ("r-dplyr" ,r-dplyr) ("r-gower" ,r-gower) ("r-ipred" ,r-ipred) ("r-lubridate" ,r-lubridate) ("r-magrittr" ,r-magrittr) + ("r-matrix" ,r-matrix) ("r-purrr" ,r-purrr) ("r-rcpproll" ,r-rcpproll) ("r-rlang" ,r-rlang) |