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Diffstat (limited to 'gnu/packages/cran.scm')
| -rw-r--r-- | gnu/packages/cran.scm | 242 |
1 files changed, 242 insertions, 0 deletions
diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index f31187b5c3..5c2e623705 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -21162,3 +21162,245 @@ evaluated interactively.") Bayes factors, posterior model probabilities, and normalizing constants in general, via different versions of bridge sampling.") (license license:gpl2+))) + +(define-public r-tea + (package + (name "r-tea") + (version "1.1") + (source + (origin + (method url-fetch) + (uri (cran-uri "tea" version)) + (sha256 + (base32 + "0ql7lrxk0ihm49kqsvz79ig8i54rwiy9nxav4v9hy72j9kj5bgjn")))) + (properties + `((upstream-name . "tea"))) + (build-system r-build-system) + (propagated-inputs + `(("r-matrix" ,r-matrix))) + (home-page "https://cran.r-project.org/web/packages/tea/") + (synopsis "Threshold estimation approaches") + (description + "This package provides different approaches for selecting the threshold +in generalized Pareto distributions. Most of them are based on minimizing the +AMSE-criterion or atleast by reducing the bias of the assumed GPD-model. +Others are heuristically motivated by searching for stable sample paths, i.e. +a nearly constant region of the tail index estimator with respect to k, which +is the number of data in the tail. The third class is motivated by graphical +inspection. In addition, a sequential testing procedure for GPD-GoF-tests +is also implemented here.") + (license license:gpl3))) + +(define-public r-awsmethods + (package + (name "r-awsmethods") + (version "1.1-1") + (source + (origin + (method url-fetch) + (uri (cran-uri "awsMethods" version)) + (sha256 + (base32 + "0hbmrcpdyg15zg4rysscsmxpxlpy0dkxx2aa63qibq7l1k14v4sh")))) + (properties + `((upstream-name . "awsMethods"))) + (build-system r-build-system) + (home-page "http://www.wias-berlin.de/software/imaging/") + (synopsis "Class and methods definitions") + (description + "This package defines the generic method @code{extract} and provides +@code{openMP} support as needed in several packages like +@code{aws}, @code{adimpro}, @code{fmri}, and @code{dwi}.") + (license license:gpl2+))) + +(define-public r-aws + (package + (name "r-aws") + (version "2.4-2") + (source + (origin + (method url-fetch) + (uri (cran-uri "aws" version)) + (sha256 + (base32 + "1czlsy64nx6j7h1smgb561yyv3f98pwqwglk77yla4mx3fp14bvq")))) + (properties + `((upstream-name . "aws"))) + (build-system r-build-system) + (propagated-inputs + `(("r-awsmethods" ,r-awsmethods) + ("r-gsl" ,r-gsl))) + (native-inputs + `(("gfortran" ,gfortran))) + (home-page "https://cran.r-project.org/web/packages/aws/") + (synopsis "Adaptive weights smoothing") + (description + "This package provides a collection of R-functions implementing adaptive +smoothing procedures in 1D, 2D and 3D. This includes the +Propagation-Separation approach to adaptive smoothing, the @dfn{Intersecting +Confidence Intervals} (ICI), variational approaches, and a non-local means +filter.") + (license license:gpl2+))) + +(define-public r-sgloptim + (package + (name "r-sgloptim") + (version "1.3.8") + (source + (origin + (method url-fetch) + (uri (cran-uri "sglOptim" version)) + (sha256 + (base32 + "15bkkvgp9v9vsp65wps48g3c2fa0fj1025hbrziywq14j7wayyjr")))) + (properties + `((upstream-name . "sglOptim"))) + (build-system r-build-system) + (propagated-inputs + `(("r-bh" ,r-bh) + ("r-doparallel" ,r-doparallel) + ("r-foreach" ,r-foreach) + ("r-matrix" ,r-matrix) + ("r-rcpp" ,r-rcpp) + ("r-rcpparmadillo" ,r-rcpparmadillo) + ("r-rcppprogress" ,r-rcppprogress))) + (native-inputs + `(("r-knitr" ,r-knitr))) + (home-page "https://github.com/nielsrhansen/sglOptim") + (synopsis "Generic sparse group Lasso solver") + (description + "This package provides a fast generic solver for sparse group lasso +optimization problems. The loss (objective) function must be defined in a C++ +module. The optimization problem is solved using a coordinate gradient +descent algorithm. Convergence of the algorithm is established and the +algorithm is applicable to a broad class of loss functions. Use of parallel +computing for cross validation and subsampling is supported through the +@code{foreach} and @code{doParallel} packages.") + (license license:gpl2+))) + +(define-public r-grouped + (package + (name "r-grouped") + (version "0.6-0") + (source + (origin + (method url-fetch) + (uri (cran-uri "grouped" version)) + (sha256 + (base32 + "1glxgacpwk7yjbkwg5ci6bmb2il6hf5zhydwi5bbq6hc032m9976")))) + (properties + `((upstream-name . "grouped"))) + (build-system r-build-system) + (propagated-inputs + `(("r-mass" ,r-mass))) + (home-page "https://cran.r-project.org/web/packages/grouped/") + (synopsis "Regression analysis of grouped and coarse data") + (description + "This package provides regression models for grouped and coarse data, +under the coarsened at random assumption.") + (license license:gpl2+))) + +(define-public r-stam + (package + (name "r-stam") + (version "0.0-1") + (source + (origin + (method url-fetch) + (uri (cran-uri "stam" version)) + (sha256 + (base32 + "1x1j45fir64kffny0nssb2hwn4rcp8gd2cjv6fw4yy0l4d0xi5iv")))) + (properties + `((upstream-name . "stam"))) + (build-system r-build-system) + (propagated-inputs + `(("r-np" ,r-np) + ("r-sp" ,r-sp))) + (home-page "https://cran.r-project.org/web/packages/stam") + (synopsis "Spatio-temporal analysis and modelling") + (description + "This package provides various methods to conduct Spatio-Temporal +Analysis and Modelling, including Exploratory Spatio-Temporal Analysis and +Inferred Spatio-Temporal Modelling.") + (license license:gpl2+))) + +(define-public r-dcv + (package + (name "r-dcv") + (version "0.1.1") + (source + (origin + (method url-fetch) + (uri (cran-uri "dcv" version)) + (sha256 + (base32 + "12c716x8dnxnqksibpmyysqp2axggvy9dpd55s9bhnsvqvi6dshj")))) + (properties + `((upstream-name . "dcv"))) + (build-system r-build-system) + (propagated-inputs + `(("r-lmtest" ,r-lmtest))) + (home-page "https://cran.r-project.org/web/packages/dcv/") + (synopsis "Conventional cross-validation statistics for climate-growth model") + (description + "This package performs several conventional cross-validation statistical +methods for climate-growth model in the climate reconstruction from tree +rings, including Sign Test statistic, Reduction of Error statistic, Product +Mean Test, Durbin-Watson statistic etc.") + (license license:gpl2))) + +(define-public r-rcdd + (package + (name "r-rcdd") + (version "1.2-2") + (source + (origin + (method url-fetch) + (uri (cran-uri "rcdd" version)) + (sha256 + (base32 + "0pzpbqnlgzr240iici70278py5wnbbxkzlgn112f9wv5ga3riric")))) + (properties + `((upstream-name . "rcdd"))) + (build-system r-build-system) + (inputs + `(("gmp" ,gmp))) + (home-page "https://www.stat.umn.edu/geyer/rcdd/") + (synopsis "Computational geometry") + (description + "This package converts back and forth between two representations of a +convex polytope: as solution of a set of linear equalities and inequalities +and as convex hull of set of points and rays. Also does linear programming +and redundant generator elimination. All functions can use exact +infinite-precision rational arithmetic.") + (license license:gpl2))) + +(define-public r-rxnat + (package + (name "r-rxnat") + (version "1.0.8") + (source + (origin + (method url-fetch) + (uri (cran-uri "Rxnat" version)) + (sha256 + (base32 + "12xcs2l6vn50bwzfmv60j1qahjw2npfm1a3yjhffcxzh6p8chwbg")))) + (properties + `((upstream-name . "Rxnat"))) + (build-system r-build-system) + (propagated-inputs + `(("r-httr" ,r-httr) + ("r-rcurl" ,r-rcurl))) + (native-inputs + `(("r-knitr" ,r-knitr))) + (home-page "https://cran.r-project.org/web/packages/Rxnat/") + (synopsis "Queries and extracts images from neuroimaging datasets") + (description + "This package allows communication with the Extensible Neuroimaging +Archive Toolkit. Rxnat uses the XNAT REST API to perform data queries and +download images.") + (license license:gpl2))) |