diff options
Diffstat (limited to 'gnu/packages/cran.scm')
| -rw-r--r-- | gnu/packages/cran.scm | 208 |
1 files changed, 162 insertions, 46 deletions
diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index 75e9afcac5..eed776e0c6 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -1157,22 +1157,20 @@ in R and Shiny via the D3 visualization library.") (define-public r-crosstalk (package (name "r-crosstalk") - (version "1.0.0") + (version "1.1.0.1") (source (origin (method url-fetch) (uri (cran-uri "crosstalk" version)) (sha256 (base32 - "0lfa89vhrzi7a1rghmygcjr8gzddw35sinb3jx6g49mc9jias7mk")))) + "03ihj7cimkklrbad9zic78xsrfcisygmgy859hqnx0hiph80p9rn")))) (build-system r-build-system) (propagated-inputs - `(("r-ggplot2" ,r-ggplot2) - ("r-htmltools" ,r-htmltools) + `(("r-htmltools" ,r-htmltools) ("r-jsonlite" ,r-jsonlite) ("r-lazyeval" ,r-lazyeval) - ("r-r6" ,r-r6) - ("r-shiny" ,r-shiny))) + ("r-r6" ,r-r6))) (home-page "https://rstudio.github.io/crosstalk/") (synopsis "Inter-widget interactivity for HTML widgets") (description @@ -1523,14 +1521,14 @@ colors are provided.") (define-public r-glue (package (name "r-glue") - (version "1.3.1") + (version "1.3.2") (source (origin (method url-fetch) (uri (cran-uri "glue" version)) (sha256 (base32 - "1a1ycg9r3gd91visp49q49rsrdgyf8kr9dxdy3hk99kikn4z5hag")))) + "0alklqcf68kmccssp4j7a7fv553pyqyy6mkkfslav83inppm4d3g")))) (build-system r-build-system) (home-page "https://github.com/tidyverse/glue") (synopsis "Interpreted string literals") @@ -1691,16 +1689,14 @@ you to rapidly iterate while developing a package.") (define-public r-rcpp (package (name "r-rcpp") - (version "1.0.3") + (version "1.0.4") (source (origin (method url-fetch) (uri (cran-uri "Rcpp" version)) (sha256 - (base32 "03h3zyjq948y0hrrs95lfk4zgx6wfrg64hjlrfrzf5na7bfh0d9b")))) + (base32 "1m80pdhzi2p82db5xkbwc2m3fzv6df59955yj03nlq40fj7zx4nr")))) (build-system r-build-system) - (native-inputs - `(("r-knitr" ,r-knitr))) ; for vignettes (home-page "http://www.rcpp.org") (synopsis "Seamless R and C++ integration") (description @@ -2014,14 +2010,14 @@ in main memory.") (define-public r-ffbase (package (name "r-ffbase") - (version "0.12.7") + (version "0.12.8") (source (origin (method url-fetch) (uri (cran-uri "ffbase" version)) (sha256 (base32 - "04kxx2f3f0743c5nvpb7x1x0pcd220dazpd5ag1pidxbz3xa85nw")))) + "0mjk7dkq1ginqqfvngzny747ggf9a8fd7kblq96n5ys1jrwjyqhq")))) (build-system r-build-system) (propagated-inputs `(("r-bit" ,r-bit) @@ -2800,14 +2796,14 @@ dimensioned arrays.") (define-public r-rmysql (package (name "r-rmysql") - (version "0.10.19") + (version "0.10.20") (source (origin (method url-fetch) (uri (cran-uri "RMySQL" version)) (sha256 (base32 - "0269pfq791qvax69lrwvvzgllyzm3cy3sdp9sakwxzvw5pxk2vhv")))) + "0lv9m6zpm8dgv7yixr6xhw379vbq45d7n7gkrmjrppdj8vcih77i")))) (properties `((upstream-name . "RMySQL"))) (build-system r-build-system) (inputs @@ -3102,14 +3098,14 @@ provides a one-row summary of model-level statistics.") (define-public r-recipes (package (name "r-recipes") - (version "0.1.9") + (version "0.1.10") (source (origin (method url-fetch) (uri (cran-uri "recipes" version)) (sha256 (base32 - "1fmnka583sqm6v5bhxbllb4cd5xfqbf268aij2xgxiwckv3c0ynm")))) + "11f96aanrzi2v6cn49fhvf9y4cmhra63wcy6nvpv6hcfaqqmwd2g")))) (build-system r-build-system) (propagated-inputs `(("r-dplyr" ,r-dplyr) @@ -3127,6 +3123,8 @@ provides a one-row summary of model-level statistics.") ("r-tidyselect" ,r-tidyselect) ("r-timedate" ,r-timedate) ("r-withr" ,r-withr))) + (native-inputs + `(("r-knitr" ,r-knitr))) (home-page "https://github.com/topepo/recipes") (synopsis "Preprocessing tools to create design matrices") (description @@ -5518,7 +5516,7 @@ simple method for converting between file types.") `(("r-foreign" ,r-foreign) ("r-lattice" ,r-lattice) ("r-sp" ,r-sp))) - (home-page "http://r-forge.r-project.org/projects/maptools/") + (home-page "https://r-forge.r-project.org/projects/maptools/") (synopsis "Tools for reading and handling spatial objects") (description "This package provides a set of tools for manipulating and reading @@ -6200,22 +6198,23 @@ references and Rd files.") (define-public r-officer (package (name "r-officer") - (version "0.3.7") + (version "0.3.8") (source (origin (method url-fetch) (uri (cran-uri "officer" version)) (sha256 (base32 - "1zyrcf0xxm67bskynjac8dhil2as7rb0mmqaq30zp9lrgfwiycpz")))) + "0xhx5n6qksyh2s9hvwhnc8y0hn362asc5y94ld06snad786hz0rw")))) (build-system r-build-system) (propagated-inputs - `(("r-digest" ,r-digest) - ("r-magrittr" ,r-magrittr) + `(("r-magrittr" ,r-magrittr) ("r-r6" ,r-r6) ("r-uuid" ,r-uuid) ("r-xml2" ,r-xml2) ("r-zip" ,r-zip))) + (native-inputs + `(("r-knitr" ,r-knitr))) (home-page "https://davidgohel.github.io/officer") (synopsis "Manipulation of Word and PowerPoint documents") (description @@ -8277,14 +8276,14 @@ comparisons of slopes.") (define-public r-pwr (package (name "r-pwr") - (version "1.2-2") + (version "1.3-0") (source (origin (method url-fetch) (uri (cran-uri "pwr" version)) (sha256 (base32 - "0r5g781lr677vp3zyhgmi7r68c87l8gd05l1s3ffnxgn5wf043sm")))) + "1kfzy73v3z6ipc3kdfkcjrp4b4p5k54nwk796gqi36srm93hgc2v")))) (build-system r-build-system) (native-inputs `(("r-knitr" ,r-knitr))) @@ -8450,14 +8449,14 @@ models.") (define-public r-glmmtmb (package (name "r-glmmtmb") - (version "1.0.0") + (version "1.0.1") (source (origin (method url-fetch) (uri (cran-uri "glmmTMB" version)) (sha256 (base32 - "1md4yw4kbng953rz1n9g1v2xffk3cxx1qmp0kvbdayg1s82l1rgx")))) + "0sdx1q7wc7895xh8747r4p0wkij0xjgn5ij62ipi9423zd0sr0mm")))) (properties `((upstream-name . "glmmTMB"))) (build-system r-build-system) (propagated-inputs @@ -8534,19 +8533,21 @@ effects models and Bayesian models.") (define-public r-ggeffects (package (name "r-ggeffects") - (version "0.14.1") + (version "0.14.2") (source (origin (method url-fetch) (uri (cran-uri "ggeffects" version)) (sha256 (base32 - "07pvs18vlybp96zz1wjr7cwiwi1cvjwkb9ahxzq0vd6adnd6ya59")))) + "1y3yfb07jrr6vkc8hk6rp52l70dj7042jvqgjzllslzy7hx2jhyw")))) (build-system r-build-system) (propagated-inputs `(("r-insight" ,r-insight) ("r-mass" ,r-mass) ("r-sjlabelled" ,r-sjlabelled))) + (native-inputs + `(("r-knitr" ,r-knitr))) (home-page "https://github.com/strengejacke/ggeffects") (synopsis "Create tidy data frames of marginal effects for ggplot") (description @@ -9755,14 +9756,14 @@ Processing.") (define-public r-waveslim (package (name "r-waveslim") - (version "1.7.5.2") + (version "1.8.2") (source (origin (method url-fetch) (uri (cran-uri "waveslim" version)) (sha256 (base32 - "166ai4q3mlh3v338si952z7fbgph80h0l4ws6bna8ig5jx81rnmz")))) + "0ibivnhz0l06sss5rrrcvyiwg3qpbyk3qn4vx4pp90kj09x4yg0k")))) (build-system r-build-system) (native-inputs `(("gfortran" ,gfortran))) @@ -12344,20 +12345,22 @@ latent growth curve models.") (define-public r-nonnest2 (package (name "r-nonnest2") - (version "0.5-2") + (version "0.5-3") (source (origin (method url-fetch) (uri (cran-uri "nonnest2" version)) (sha256 (base32 - "1bq44qqmm59j91m0sny4xnqmxqlga4cm48qdsw8xfs3x19xwmxk6")))) + "1mnv4pa583ir9s03h952hk40lwdywr3g88g76sk1zsa54rcmn82c")))) (build-system r-build-system) (propagated-inputs `(("r-compquadform" ,r-compquadform) ("r-lavaan" ,r-lavaan) ("r-mvtnorm" ,r-mvtnorm) ("r-sandwich" ,r-sandwich))) + (native-inputs + `(("r-knitr" ,r-knitr))) (home-page "https://cran.r-project.org/web/packages/nonnest2/") (synopsis "Tests of non-nested models") (description @@ -13014,19 +13017,21 @@ utilities for sequence data management under the ACNUC system.") (define-public r-units (package (name "r-units") - (version "0.6-5") + (version "0.6-6") (source (origin (method url-fetch) (uri (cran-uri "units" version)) (sha256 (base32 - "02nls8m0r1r7kljs4x35naz3szq62hyqyd5vracf1xwi1kz5kdsh")))) + "11x6xz1fbml28xmrhgn4sii9vfyj3gyfc1dfxahdg9cszdmcgdnh")))) (build-system r-build-system) (inputs `(("udunits" ,udunits))) (propagated-inputs `(("r-rcpp" ,r-rcpp))) + (native-inputs + `(("r-knitr" ,r-knitr))) (home-page "https://github.com/r-quantities/units/") (synopsis "Measurement Units for R Vectors") (description @@ -14279,14 +14284,14 @@ databases, including ENA, PDB or ChEMBL are also accessible.") (define-public r-ggraph (package (name "r-ggraph") - (version "2.0.1") + (version "2.0.2") (source (origin (method url-fetch) (uri (cran-uri "ggraph" version)) (sha256 (base32 - "0q2yqsb981a2arf9j530kqs61vw38ixyxbhb6yvv7skgbck02r6y")))) + "1ckq82hg52vr2wydkqv2wrppgjyvddd6bwqzrngqlm7j71xapjl0")))) (build-system r-build-system) (propagated-inputs `(("r-digest" ,r-digest) @@ -14303,6 +14308,8 @@ databases, including ENA, PDB or ChEMBL are also accessible.") ("r-scales" ,r-scales) ("r-tidygraph" ,r-tidygraph) ("r-viridis" ,r-viridis))) + (native-inputs + `(("r-knitr" ,r-knitr))) (home-page "https://cran.r-project.org/web/packages/ggraph/") (synopsis "Implementation of grammar of graphics for graphs and networks") (description @@ -15372,14 +15379,14 @@ in R, including a translation of the original algorithm into R.") (define-public r-uwot (package (name "r-uwot") - (version "0.1.5") + (version "0.1.8") (source (origin (method url-fetch) (uri (cran-uri "uwot" version)) (sha256 (base32 - "0pz9wa89xq4d119q86lskrznf979m0r1db8iaprcz7kxbi6b8lrj")))) + "1jzh8r1h6f7pw7pb1fr32vn6ai9g10s56ahkq0vi77iznihy1rpd")))) (build-system r-build-system) (propagated-inputs `(("r-dqrng" ,r-dqrng) @@ -15388,7 +15395,6 @@ in R, including a translation of the original algorithm into R.") ("r-matrix" ,r-matrix) ("r-rcpp" ,r-rcpp) ("r-rcppannoy" ,r-rcppannoy) - ("r-rcppparallel" ,r-rcppparallel) ("r-rcppprogress" ,r-rcppprogress) ("r-rspectra" ,r-rspectra))) (home-page "https://github.com/jlmelville/uwot") @@ -16690,14 +16696,14 @@ elicitation options based on Kass and Vaidyanathan (1992) (define-public r-accept (package (name "r-accept") - (version "0.7.0") + (version "0.7.1") (source (origin (method url-fetch) (uri (cran-uri "accept" version)) (sha256 (base32 - "1r4mhy9g4wjcjgdd0gwdarmr09292il3vdkmx0hz7vh9mffyr9kx")))) + "0pn8q0jsi0nb2mm2kv6sjczflflshhy55y7nqqnk70yx9f6wm83y")))) (properties `((upstream-name . "accept"))) (build-system r-build-system) (propagated-inputs @@ -19384,14 +19390,14 @@ and Euclidean distance is particularly fast.") (define-public r-isocodes (package (name "r-isocodes") - (version "2019.12.22") + (version "2020.03.16") (source (origin (method url-fetch) (uri (cran-uri "ISOcodes" version)) (sha256 (base32 - "1k2f2258bwzs0b3nxma9kcw395qkljvk514a7047rx4dn0iwd874")))) + "1hz1sj57qkkkrgn8slsz2n4jv1fkyp40503j9rg30lxy4gmb83hn")))) (properties `((upstream-name . "ISOcodes"))) (build-system r-build-system) (home-page "https://cran.r-project.org/package=ISOcodes") @@ -19473,14 +19479,14 @@ Norwegian, Portuguese, Romanian, Russian, Spanish, Swedish and Turkish.") (define-public r-quanteda (package (name "r-quanteda") - (version "2.0.0") + (version "2.0.1") (source (origin (method url-fetch) (uri (cran-uri "quanteda" version)) (sha256 (base32 - "0snr610vahbdqkmma0zy5mg5qbb6n1b8sgsclqb2sccn1gg38vyy")))) + "0pym6vdzqbkyj87m3pla229092xvvx4j830x67qflxzzdmc9dzhz")))) (properties `((upstream-name . "quanteda"))) (build-system r-build-system) (propagated-inputs @@ -19503,6 +19509,8 @@ Norwegian, Portuguese, Romanian, Russian, Spanish, Swedish and Turkish.") ("r-stringi" ,r-stringi) ("r-xml2" ,r-xml2) ("r-yaml" ,r-yaml))) + (native-inputs + `(("r-knitr" ,r-knitr))) (home-page "https://quanteda.io") (synopsis "Quantitative analysis of textual data") (description @@ -20794,3 +20802,111 @@ statistics and p-values of the correlation coefficients.") scales and utilities, including a spell check function for plot label fields and an overall emphasis on typography.") (license license:expat))) + +(define-public r-crochet + (package + (name "r-crochet") + (version "2.2.0") + (source + (origin + (method url-fetch) + (uri (cran-uri "crochet" version)) + (sha256 + (base32 + "1cbv79nyycxk6f8ldcsnn2pvgxqlnrj0qs19nhafnq2clxy863k6")))) + (build-system r-build-system) + (home-page "https://github.com/agrueneberg/crochet") + (synopsis "Implementation Helper for Matrix-Like Types") + (description + "Functions to help implement the extraction / subsetting / indexing +function @code{[} and replacement function @code{[<-} of custom matrix-like +types (based on S3, S4, etc.), modeled as closely to the base matrix class +as possible (with tests to prove it).") + (license license:expat))) + +(define-public r-boa + (package + (name "r-boa") + (version "1.1.8-2") + (source + (origin + (method url-fetch) + (uri (cran-uri "boa" version)) + (sha256 + (base32 + "04lhqk5qfvaz1jk90glr2yi5vq7cdy0w8m6g2lnzk359l9y41zhp")))) + (properties `((upstream-name . "boa"))) + (build-system r-build-system) + (home-page "http://www.jstatsoft.org/v21/i11") + (synopsis "Library for @dfn{Bayesian Output Analysis Program} (BOA) for MCMC") + (description + "This package provides a menu-driven program and library of functions for +carrying out convergence diagnostics and statistical and graphical analysis of +@dfn{Markov chain Monte Carlo} (MCMC) sampling output.") + (license license:gpl2+))) + +(define-public r-httpcode + (package + (name "r-httpcode") + (version "0.2.0") + (source (origin + (method url-fetch) + (uri (cran-uri "httpcode" version)) + (sha256 + (base32 + "06k853ihwzkcx4z3jzazpb03p91frqkwz18jy4fwr8j2nwyqbhgv")))) + (build-system r-build-system) + (home-page "https://github.com/sckott/httpcode") + (synopsis "HTTP status code helper") + (description "@code{httpcode} provides functionality for finding and +explaining the meaning of @code{HTTP} status codes. Functions are included for +searching for codes by full or partial number, by message, and to get +appropriate dog and cat images for many status codes.") + (license license:expat))) + +(define-public r-latex2exp + (package + (name "r-latex2exp") + (version "0.4.0") + (source (origin + (method url-fetch) + (uri (cran-uri "latex2exp" version)) + (sha256 + (base32 + "12nbcgfmv13k6sc6m326ras9bcvy380b7rxcxphn06r3cfkby0zw")))) + (build-system r-build-system) + (propagated-inputs + `(("r-stringr" ,r-stringr) + ("r-magrittr", r-magrittr))) + (home-page "https://github.com/stefano-meschiari/latex2exp/") + (synopsis "Use LaTeX expressions in plots") + (description "@code{latex2exp} parses and converts LaTeX math formulas to +R's plotmath expressions, used to enter mathematical formulas and symbols to be +rendered as text, axis labels, etc. throughout R's plotting system.") + (license license:expat))) + +(define-public r-oai + (package + (name "r-oai") + (version "0.3.0") + (source (origin + (method url-fetch) + (uri (cran-uri "oai" version)) + (sha256 + (base32 + "1ipw9bq3ra66d1ddj1rylyyd20mlcb2i7phzhywra53s1fdifq1g")))) + (build-system r-build-system) + (propagated-inputs + `(("r-xml2" ,r-xml2) + ("r-httr" ,r-httr) + ("r-plyr" ,r-plyr) + ("r-stringr" ,r-stringr) + ("r-tibble" ,r-tibble))) + (home-page "https://github.com/ropensci/oai/") + (synopsis "General purpose OAI-PMH services client") + (description "@code{oai} provides a general purpose client to work with +any @dfn{Open Archives Initiative Protocol for 'Metadata' Harvesting} (OAI-PMH) +service. Functions are provided to work with the OAI-PMH verbs: +@code{GetRecord}, @code{Identify}, @code{ListIdentifiers}, +@code{ListMetadataFormats}, @code{ListRecords}, and @code{ListSets}.") + (license license:expat))) |