diff options
Diffstat (limited to 'gnu/packages/cran.scm')
| -rw-r--r-- | gnu/packages/cran.scm | 511 |
1 files changed, 254 insertions, 257 deletions
diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index 0280a51be5..4c4530deb9 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -188,14 +188,14 @@ etc.") (define-public r-datawizard (package (name "r-datawizard") - (version "0.2.0.1") + (version "0.2.1") (source (origin (method url-fetch) (uri (cran-uri "datawizard" version)) (sha256 (base32 - "15q491qix4a9b10wkb5bm9jnnr62smjw4qdrw4bd51i1kgvd6kl5")))) + "062phzfcvn79npn4s58gz1m5ignyvr4q2zlqnyxla4p7l760djl9")))) (properties `((upstream-name . "datawizard"))) (build-system r-build-system) (propagated-inputs @@ -213,14 +213,14 @@ wrangling backend for the packages in the @code{easystats} ecosystem.") (define-public r-diffobj (package (name "r-diffobj") - (version "0.3.4") + (version "0.3.5") (source (origin (method url-fetch) (uri (cran-uri "diffobj" version)) (sha256 (base32 - "1z4yhfasjpi9rxl1lh9bny7yvs947a6hhc768azc1wwad748mk9q")))) + "0q6gwd9pqh41f6j5p9jl92aji4p8kx9inffpha93d7jc3ndsfq6q")))) (properties `((upstream-name . "diffobj"))) (build-system r-build-system) (propagated-inputs `(("r-crayon" ,r-crayon))) @@ -1233,13 +1233,13 @@ single step.") (define-public r-rvest (package (name "r-rvest") - (version "1.0.1") + (version "1.0.2") (source (origin (method url-fetch) (uri (cran-uri "rvest" version)) (sha256 - (base32 "1v99bpp2077s4y5phvkzpgjyr8cs9axifm1c3npw6jmh8x9j91h8")))) + (base32 "1905vxgnj3q09l1wf6rwxpbpydznp06nbkrclnc05j2415z4gfw9")))) (build-system r-build-system) (propagated-inputs `(("r-httr" ,r-httr) @@ -1686,13 +1686,13 @@ applications.") (define-public r-htmltable (package (name "r-htmltable") - (version "2.2.1") + (version "2.3.0") (source (origin (method url-fetch) (uri (cran-uri "htmlTable" version)) (sha256 - (base32 "05zy9acx4s80dr880q69i4rcjqgmbz18gn7pyazda9gsnm981j96")))) + (base32 "0xx5fza40six81mkfjsja6a8j6cg1mlzg0cxfgv084riyq79l387")))) (properties `((upstream-name . "htmlTable"))) (build-system r-build-system) (propagated-inputs @@ -1973,14 +1973,14 @@ language, which is stable, powerful, and CSS compatible.") (define-public r-bslib (package (name "r-bslib") - (version "0.3.0") + (version "0.3.1") (source (origin (method url-fetch) (uri (cran-uri "bslib" version)) (sha256 (base32 - "0zfjavz5jw4lfbrmc3rgsivcrxq2ia9jwmfbcrdxnxlmyri8qinr")) + "0jcqklry1nkibz0sydsz5xdsnb4wnrrhvmyr9ji3k45bbipbap2z")) (snippet '(for-each delete-file '("inst/lib/bs-a11y-p/plugins/js/bootstrap-accessibility.min.js" @@ -2263,36 +2263,35 @@ supports interactive trees, to enable rich, editable trees in Shiny.") (define-public r-shinydashboard (package (name "r-shinydashboard") - (version "0.7.1") + (version "0.7.2") (source (origin (method url-fetch) (uri (cran-uri "shinydashboard" version)) (sha256 (base32 - "0khac8b27q3swdw07kl609hm0fjfjsjv591b388q99mqqr2rk92i")))) + "0hrqkwlpb8rnmp5j74p134g4c4cl16icmwc2ip6k1634fa2y8vm5")))) (build-system r-build-system) ;; The directory inst/AdminLTE/ contains a minified JavaScript file. ;; Regenerate it from the included sources. (arguments - `(#:modules ((guix build utils) - (guix build r-build-system) - (ice-9 popen)) - #:phases + `(#:phases (modify-phases %standard-phases (add-after 'unpack 'generate-minified-javascript (lambda _ (with-directory-excursion "inst/AdminLTE" - (delete-file "app.min.js") - (let ((minified (open-pipe* OPEN_READ "uglifyjs" "app.js"))) - (call-with-output-file "app.min.js" - (lambda (port) - (dump-port minified port)))))))))) + (let ((target "app.min.js") + (source "app.js")) + (format #t "Processing ~a --> ~a~%" + source target) + (delete-file target) + (invoke "esbuild" source "--minify" + (string-append "--outfile=" target))))))))) (propagated-inputs `(("r-htmltools" ,r-htmltools) ("r-promises" ,r-promises) ("r-shiny" ,r-shiny))) (native-inputs - `(("uglifyjs" ,node-uglify-js))) + `(("esbuild" ,esbuild))) (home-page "https://rstudio.github.io/shinydashboard/") (synopsis "Create dashboards with shiny") (description "This package provides an extension to the Shiny web @@ -2798,14 +2797,14 @@ coordinates.") (define-public r-geosphere (package (name "r-geosphere") - (version "1.5-10") + (version "1.5-14") (source (origin (method url-fetch) (uri (cran-uri "geosphere" version)) (sha256 (base32 - "15xlgsmn0vwky1l13n6acdz6jn2b2na3gf6x367y3qh1f5w4zkan")))) + "0bg4vfmrw140j2ax0p6bflvb77w03ir39wa87l96rj473jpa9hzj")))) (build-system r-build-system) (propagated-inputs `(("r-sp" ,r-sp))) (home-page "https://cran.r-project.org/web/packages/geosphere") @@ -3213,14 +3212,14 @@ is configured appropriately so R can use them.") (define-public r-pkgload (package (name "r-pkgload") - (version "1.2.2") + (version "1.2.3") (source (origin (method url-fetch) (uri (cran-uri "pkgload" version)) (sha256 (base32 - "0yxvik8kij0mqlki46hf6xnbfvmxwk0r2a3zwjpg0fwcd2s835a8")))) + "0jdkaj5cl0viy0i0hkcm4n2wlg1mfv3camr7f385njfararfanhh")))) (build-system r-build-system) (propagated-inputs `(("r-cli" ,r-cli) @@ -4249,14 +4248,14 @@ functions from LINPACK.") (define-public r-fitdistrplus (package (name "r-fitdistrplus") - (version "1.1-5") + (version "1.1-6") (source (origin (method url-fetch) (uri (cran-uri "fitdistrplus" version)) (sha256 (base32 - "1p9rvvh05zqb9vzhcyzdh7i8lbmb53nj8nyn0gqcmp7wafg9cd1f")))) + "1glnbcm1gghzgvzpxcfsmn7dp2f9jqyx39n3ydwp9fx38409khhp")))) (build-system r-build-system) (propagated-inputs `(("r-mass" ,r-mass) @@ -4611,14 +4610,14 @@ the RMariaDB package.") (define-public r-rpostgresql (package (name "r-rpostgresql") - (version "0.7") + (version "0.7-3") (source (origin (method url-fetch) (uri (cran-uri "RPostgreSQL" version)) (sha256 (base32 - "1bqfdbs09f65ssc6bx4z3kkmia8ja6qbnijxizw63p0fbcakq2q4")))) + "1fbixmnjp1kh6yiv8zhg8zi5ryvdf5j2jxv4agq5gcxf541s3g5x")))) (properties `((upstream-name . "RPostgreSQL"))) (build-system r-build-system) (inputs @@ -4890,14 +4889,14 @@ provides a one-row summary of model-level statistics.") (define-public r-recipes (package (name "r-recipes") - (version "0.1.16") + (version "0.1.17") (source (origin (method url-fetch) (uri (cran-uri "recipes" version)) (sha256 (base32 - "1mayfdbn6q775d4gbdjrrhdbmpsxga57kwh0h7bwv8rk0vmvik23")))) + "0gbdc5kvbn14s5zrf4vrdjvkfajs00p7vvb433ii0lqnl07bl87d")))) (build-system r-build-system) (propagated-inputs `(("r-dplyr" ,r-dplyr) @@ -4916,6 +4915,7 @@ provides a one-row summary of model-level statistics.") ("r-tidyr" ,r-tidyr) ("r-tidyselect" ,r-tidyselect) ("r-timedate" ,r-timedate) + ("r-vctrs" ,r-vctrs) ("r-withr" ,r-withr))) (native-inputs `(("r-knitr" ,r-knitr))) @@ -5160,14 +5160,14 @@ clustered data.") (define-public r-mitml (package (name "r-mitml") - (version "0.4-2") + (version "0.4-3") (source (origin (method url-fetch) (uri (cran-uri "mitml" version)) (sha256 (base32 - "0zrmchsk012linw3m5rda6hj8xpxpwzbf4alq0nc1pzvl99aa558")))) + "00i18nnvrdrg91crgcp2a431xs71cawaip3xkqk2myv0iav3xga9")))) (build-system r-build-system) (propagated-inputs `(("r-haven" ,r-haven) @@ -5446,14 +5446,14 @@ where possible.") (define-public r-laeken (package (name "r-laeken") - (version "0.5.1") + (version "0.5.2") (source (origin (method url-fetch) (uri (cran-uri "laeken" version)) (sha256 (base32 - "199rjkhjjygpr6cjzab87as46acb5npi44m4yycvk7lnd0blma8s")))) + "1p3ccbaydlr52p8qmgmm2l6kryvq6jjjx7mqn2vv0gpjaxqhyy92")))) (build-system r-build-system) (propagated-inputs `(("r-boot" ,r-boot) @@ -5468,14 +5468,14 @@ modeling for empirical income distributions.") (define-public r-vcd (package (name "r-vcd") - (version "1.4-8") + (version "1.4-9") (source (origin (method url-fetch) (uri (cran-uri "vcd" version)) (sha256 (base32 - "030yyhpzsj4ivwrla7p9kgvmyjh6b8fr7czf678ykxjj64ccnvr3")))) + "13sn77qdcyll9lz7nab0bxzfvpgj8f5rl2cq5ylpz8pibynj1d55")))) (build-system r-build-system) (propagated-inputs `(("r-colorspace" ,r-colorspace) @@ -5754,14 +5754,14 @@ timeout. It can also poll several processes at once.") (define-public r-tsp (package (name "r-tsp") - (version "1.1-10") + (version "1.1-11") (source (origin (method url-fetch) (uri (cran-uri "TSP" version)) (sha256 (base32 - "0z1v6m0vqjzxc4az3zyjaayygx0jr3mdmc56jjd421iqh0b9z5s4")))) + "0gdwxbj2gria7jhsswmfvc32r43sdd63z3lyy21gbvmfcakvb8j9")))) (properties `((upstream-name . "TSP"))) (build-system r-build-system) (propagated-inputs `(("r-foreach" ,r-foreach))) @@ -5841,14 +5841,14 @@ Markdown documents.") (define-public r-seriation (package (name "r-seriation") - (version "1.3.0") + (version "1.3.1") (source (origin (method url-fetch) (uri (cran-uri "seriation" version)) (sha256 (base32 - "1vl0zfdvxdccvda8lwkjhg5rivj2q5gjm4qvkqwny6asm06x80ny")))) + "08c37n3xxc4n4vbkw38k3l3hdlmck8drqpl6z274vkgi2sqv8qyf")))) (build-system r-build-system) (propagated-inputs `(("r-cluster" ,r-cluster) @@ -5873,13 +5873,13 @@ iVAT).") (define-public r-xfun (package (name "r-xfun") - (version "0.26") + (version "0.27") (source (origin (method url-fetch) (uri (cran-uri "xfun" version)) (sha256 - (base32 "1997s00dzkyj15xk9w1r2h6i49srpgqzvhhyvd5pk1kwkd4809ly")))) + (base32 "11alh3kasiizfar0f667m5sj3s5443fggjv0541ghmxwlqrvyxf7")))) (build-system r-build-system) ;; knitr itself depends on xfun #; @@ -5977,14 +5977,14 @@ to variables on the left-hand side of the assignment.") (define-public r-pillar (package (name "r-pillar") - (version "1.6.3") + (version "1.6.4") (source (origin (method url-fetch) (uri (cran-uri "pillar" version)) (sha256 (base32 - "1ica4zjr3kmcpqh2668nmsv5dbvm4yri5952vcxja4djsgfnry3j")))) + "17m13rzgwdddwa0n3gpmax6wmfaphbg71l13ffhw5vnxf6i94fh3")))) (build-system r-build-system) (propagated-inputs `(("r-cli" ,r-cli) @@ -6046,14 +6046,14 @@ packages that work with genomic data.") (define-public r-tinytex (package (name "r-tinytex") - (version "0.33") + (version "0.34") (source (origin (method url-fetch) (uri (cran-uri "tinytex" version)) (sha256 (base32 - "10lqn704dqv5k5v6y964l8c77rwy4ilrc1hcb99j4vxpx3p4nd43")))) + "16z6v06pmvg02rbxkqyiidasg1dryy759zabnqjw6y85nybr618x")))) (build-system r-build-system) (propagated-inputs `(("r-xfun" ,r-xfun))) @@ -6340,14 +6340,14 @@ provides some missing S-PLUS functionality in R.") (define-public r-ifultools (package (name "r-ifultools") - (version "2.0-22") + (version "2.0-23") (source (origin (method url-fetch) (uri (cran-uri "ifultools" version)) (sha256 (base32 - "0f95vqc47dgssqngznk0rclr72ndbyxc7gdq2cmbksvq7qpn3gg1")))) + "16a7rbvlym3bnfm93ikr5kl0l86ppk0s41fva6idvcx765g3fqkk")))) (build-system r-build-system) (propagated-inputs `(("r-mass" ,r-mass) @@ -6796,14 +6796,14 @@ powerful and convenient features.") (define-public r-heatmaply (package (name "r-heatmaply") - (version "1.2.1") + (version "1.3.0") (source (origin (method url-fetch) (uri (cran-uri "heatmaply" version)) (sha256 (base32 - "0hspfkninwy62sf8gkdcsvwnvl66bbnjs2dpah9rr95a3rsgdp9d")))) + "1w8yyzb68laxd4zxycvgmpqj5wnyidjgv1vbzbxndp9p92f2cp8a")))) (build-system r-build-system) (propagated-inputs `(("r-assertthat" ,r-assertthat) @@ -7920,14 +7920,14 @@ Python's @url{https://github.com/ActiveState/appdirs,Appdirs} to R.") (define-public r-rastervis (package (name "r-rastervis") - (version "0.50.3") + (version "0.51.0") (source (origin (method url-fetch) (uri (cran-uri "rasterVis" version)) (sha256 (base32 - "10njks2kwyh5rp2b6sf2hffxzzwwhskb8m98l73p8yrvsdri1gyj")))) + "1gkn5na7cspnh3qpmi4k5n65crmp8c2s106g8hh51lsdvm5369aj")))) (properties `((upstream-name . "rasterVis"))) (build-system r-build-system) (propagated-inputs @@ -8549,14 +8549,14 @@ functions.") (define-public r-rjags (package (name "r-rjags") - (version "4-11") + (version "4-12") (source (origin (method url-fetch) (uri (cran-uri "rjags" version)) (sha256 (base32 - "0vs86jji4h26y8aczy8r08jiq7ax0idlrm87mmvaa5sxlqmqa705")))) + "041y4zfr50y96g0kl857jcba0a3gpdpk8qfn9fj8zxzbz71k87xr")))) (build-system r-build-system) (propagated-inputs `(("r-coda" ,r-coda))) @@ -8575,14 +8575,14 @@ hierarchical models using Markov Chain Monte Carlo (MCMC) simulation.") (define-public r-rbibutils (package (name "r-rbibutils") - (version "2.2.3") + (version "2.2.4") (source (origin (method url-fetch) (uri (cran-uri "rbibutils" version)) (sha256 (base32 - "1rzc2icik26qlnrbq58c24lc9m0grl83p0hyr70whallqfipa174")))) + "15yyihk0dgz3yyqz28r5nc6m99zcywpabnabf18phbs7rb87p7mv")))) (properties `((upstream-name . "rbibutils"))) (build-system r-build-system) (home-page "https://geobosh.github.io/rbibutils/") @@ -8709,14 +8709,14 @@ reduced-bias estimates.") (define-public r-entropy (package (name "r-entropy") - (version "1.3.0") + (version "1.3.1") (source (origin (method url-fetch) (uri (cran-uri "entropy" version)) (sha256 (base32 - "0fhhsy8ci9c73xwr2b167dfix0b7kqsk6kf46qqv1lmvbv11vxqa")))) + "1f0j8jsn6pzf4gi5g0akixx6x5vc69ci5f4m2vnwp40frvsqjnkg")))) (properties `((upstream-name . "entropy"))) (build-system r-build-system) (home-page "https://www.strimmerlab.org/software/entropy/") @@ -8849,14 +8849,14 @@ other add-on packages.") (define-public r-insight (package (name "r-insight") - (version "0.14.4") + (version "0.14.5") (source (origin (method url-fetch) (uri (cran-uri "insight" version)) (sha256 (base32 - "0h63nr337zbczbj9izyb7g5dlzwail5w70hbbn45paq6vybkqks3")))) + "10kc72g2hfsiipba4kalda1wxsb01nq2ax2yim386bkk0vjszwfx")))) (build-system r-build-system) (native-inputs `(("r-knitr" ,r-knitr))) @@ -8985,14 +8985,14 @@ functions.") (define-public r-flextable (package (name "r-flextable") - (version "0.6.8") + (version "0.6.9") (source (origin (method url-fetch) (uri (cran-uri "flextable" version)) (sha256 (base32 - "1b4hyrarxbk4d1ma5gy162b13nm5r5ysi049bxgcfim50rh40igs")))) + "15lba98wnci2nsndj86gx3k94q9lfxhp5nr5xlhgcnycyj1c9zjx")))) (build-system r-build-system) (propagated-inputs `(("r-base64enc" ,r-base64enc) @@ -9137,14 +9137,14 @@ matches version and feature constraints.") (define-public r-argparse (package (name "r-argparse") - (version "2.1.1") + (version "2.1.2") (source (origin (method url-fetch) (uri (cran-uri "argparse" version)) (sha256 (base32 - "1k6v35g3bppcr896h4v39zh1sxxia1bxxh29xv0mhad1nvmv25j9")))) + "1cz5qlxw3v8smd5vb00wlzy02mx5i0infm5hnq55hnakffd3b5wr")))) (build-system r-build-system) (inputs `(("python" ,python))) (propagated-inputs @@ -9370,14 +9370,14 @@ bootstrap. Confidence intervals can be computed for (p)AUC or ROC curves.") (define-public r-rootsolve (package (name "r-rootsolve") - (version "1.8.2.2") + (version "1.8.2.3") (source (origin (method url-fetch) (uri (cran-uri "rootSolve" version)) (sha256 (base32 - "1p7nh09g2815vqpvi6c5vvjshkwjn00nx5d3gdyjs304q5312q0a")))) + "182bb727sgqi5f3pzmw8jnn328wdjrgj9lfvg49gv8s22rjd3cxm")))) (properties `((upstream-name . "rootSolve"))) (build-system r-build-system) (native-inputs `(("gfortran" ,gfortran))) @@ -9446,13 +9446,13 @@ based on index arrays and simple triplet representations, respectively.") (define-public r-manipulatewidget (package (name "r-manipulatewidget") - (version "0.11.0") + (version "0.11.1") (source (origin (method url-fetch) (uri (cran-uri "manipulateWidget" version)) (sha256 - (base32 "0iysgl6ab8fvg1xxdx6hr3swqwbkfqzjkk4x5sbvmawbl2a395gj")))) + (base32 "1dpgzmiv08afm57yxr017b014lfn9h3pa4w65prk5k3dgn6p4wsv")))) (properties `((upstream-name . "manipulateWidget"))) (build-system r-build-system) @@ -9549,14 +9549,14 @@ from the @code{stats} package (plus some extra parameters).") (define-public r-cmplot (package (name "r-cmplot") - (version "3.6.2") + (version "3.7.0") (source (origin (method url-fetch) (uri (cran-uri "CMplot" version)) (sha256 (base32 - "13y05j5gsdc712fn7yvcz5nx2pbcdvl201hfb6jzpvl86qx2l0j1")))) + "0d6ww8pdrawdg5acbhiyi2jpmapf2ghixy9mi4kmsq8yg36pksfh")))) (properties `((upstream-name . "CMplot"))) (build-system r-build-system) (home-page "https://github.com/YinLiLin/CMplot") @@ -9981,14 +9981,14 @@ data with multiple data types.") (define-public r-qualv (package (name "r-qualv") - (version "0.3-3") + (version "0.3-4") (source (origin (method url-fetch) (uri (cran-uri "qualV" version)) (sha256 (base32 - "1yyqk223ydcc0125gsn33a4mcdp8bd76fpn8kj9bfz9g78b8dqmx")))) + "0rkjzva2h158d5c631jmjjh7qjibbyisl0503san80rk9fgxl45b")))) (properties `((upstream-name . "qualV"))) (build-system r-build-system) (propagated-inputs @@ -10121,18 +10121,19 @@ used to teach mathematics, statistics, computation and modeling.") (define-public r-raster (package (name "r-raster") - (version "3.4-13") + (version "3.5-2") (source (origin (method url-fetch) (uri (cran-uri "raster" version)) (sha256 (base32 - "120k4bkgwddrx8ijgdhsgjz8g8dxcwp9bx3kfzrhw00q1b289hir")))) + "0wixw1ixnmcmkwczpj8m90c76727zira2rl4ighashggydkm2mlr")))) (build-system r-build-system) (propagated-inputs `(("r-rcpp" ,r-rcpp) - ("r-sp" ,r-sp))) + ("r-sp" ,r-sp) + ("r-terra" ,r-terra))) (home-page "https://www.rspatial.org/") (synopsis "Geographic data analysis and modeling") (description @@ -11013,13 +11014,13 @@ series.") (define-public r-acceptancesampling (package (name "r-acceptancesampling") - (version "1.0-6") + (version "1.0-7") (source (origin (method url-fetch) (uri (cran-uri "AcceptanceSampling" version)) (sha256 - (base32 "1z3rmln63ki2kik9kinbwr9qhr32ggbmh4mm3xqy6di119n47ca9")))) + (base32 "13k3zczjycw24n5yp0qmrm233id5j8h6fvra57f1n6js7ljxiiq2")))) (properties `((upstream-name . "AcceptanceSampling"))) (build-system r-build-system) @@ -11111,19 +11112,21 @@ cross-sectional, time series, clustered, panel, and longitudinal data.") (define-public r-th-data (package (name "r-th-data") - (version "1.0-10") + (version "1.1-0") (source (origin (method url-fetch) (uri (cran-uri "TH.data" version)) (sha256 (base32 - "0mgz7aj2d9abbmdr65zgmg1ddp3fdbs3mfj83r5xadh5ldkir2k1")))) + "0ghihfpk5d8gsdlzf6phw7dwwz3adx64pxk82vlmlqx53ljpxcr1")))) (properties `((upstream-name . "TH.data"))) (build-system r-build-system) (propagated-inputs `(("r-mass" ,r-mass) ("r-survival" ,r-survival))) + (native-inputs + `(("r-knitr" ,r-knitr))) (home-page "https://cran.r-project.org/web/packages/TH.data/") (synopsis "Shared data sets") (description @@ -11162,20 +11165,19 @@ Hothorn, Westfall, 2010, CRC Press).") (define-public r-emmeans (package (name "r-emmeans") - (version "1.6.3") + (version "1.7.0") (source (origin (method url-fetch) (uri (cran-uri "emmeans" version)) (sha256 (base32 - "1mwcq3hvpx04qnn5k0bv1mikjgm9mk6m83i8hj350s1c1a0mi40n")))) + "1ig94mjifhhygznv2xv1gl8hdvk618w5fcmkaj1xmpwpc64m9dnl")))) (build-system r-build-system) (propagated-inputs `(("r-estimability" ,r-estimability) ("r-mvtnorm" ,r-mvtnorm) ("r-numderiv" ,r-numderiv) - ("r-plyr" ,r-plyr) ("r-xtable" ,r-xtable))) (native-inputs `(("r-knitr" ,r-knitr))) @@ -11213,13 +11215,13 @@ Cohen (1988).") (define-public r-libcoin (package (name "r-libcoin") - (version "1.0-8") + (version "1.0-9") (source (origin (method url-fetch) (uri (cran-uri "libcoin" version)) (sha256 - (base32 "0izgnr4zdrbz3a05b0s28xfly4izp2zslgh282l9ads4skrmj3hl")))) + (base32 "1syrcdj5qg5m3zd3dlxgpfklswbalfg42w058dr09hnzqsvx0z9d")))) (build-system r-build-system) (propagated-inputs `(("r-mvtnorm" ,r-mvtnorm))) (home-page "https://cran.r-project.org/web/packages/libcoin") @@ -11232,14 +11234,14 @@ and permutation inference in the framework of Strasser and Weber (1999).") (define-public r-coin (package (name "r-coin") - (version "1.4-1") + (version "1.4-2") (source (origin (method url-fetch) (uri (cran-uri "coin" version)) (sha256 (base32 - "15xvhnbyg34aacn6jfz4bsa1f7wq2ci0hslj8mgymql90k50x1qi")))) + "1cpv7jx840inzg98bkhrb5yscx0gpag6br237r5qpnc2gbrd2ikm")))) (build-system r-build-system) (propagated-inputs `(("r-libcoin" ,r-libcoin) @@ -11294,14 +11296,14 @@ Bayesian modeling.") (define-public r-tmb (package (name "r-tmb") - (version "1.7.21") + (version "1.7.22") (source (origin (method url-fetch) (uri (cran-uri "TMB" version)) (sha256 (base32 - "1lf9vf28l48xhw2irxfxl4vsqzj7skzblydw32p18zddzpapl0z9")))) + "116k7ffgadhkqq4lckfd4403qvybcls1hcs1ap1b7lkylghjahf2")))) (properties `((upstream-name . "TMB"))) (build-system r-build-system) (propagated-inputs @@ -11426,14 +11428,14 @@ ROPE percentage and pd).") (define-public r-performance (package (name "r-performance") - (version "0.7.3") + (version "0.8.0") (source (origin (method url-fetch) (uri (cran-uri "performance" version)) (sha256 (base32 - "03qdsdl4x3hwqlbs7hlqb73xypd13p5zj519y0zcydqkf25391sp")))) + "1xjjnhqmwfflm5yfgjhycjn0fj0manvsvkk2ppifn0373bajp5n2")))) (build-system r-build-system) (propagated-inputs `(("r-bayestestr" ,r-bayestestr) @@ -11484,20 +11486,22 @@ results using @code{ggplot2}.") (define-public r-effectsize (package (name "r-effectsize") - (version "0.4.5") + (version "0.5") (source (origin (method url-fetch) (uri (cran-uri "effectsize" version)) (sha256 (base32 - "0rp0r75p8q467lmrsr1gl9wjpib9jz7ksx5rm6c7q2lfg9b9zrjf")))) + "0w7m3hzmwral9cycpvknrkbdvgk230b3vg5sxbm84x72mw534hnh")))) (properties `((upstream-name . "effectsize"))) (build-system r-build-system) (propagated-inputs `(("r-bayestestr" ,r-bayestestr) + ("r-datawizard" ,r-datawizard) ("r-insight" ,r-insight) - ("r-parameters" ,r-parameters))) + ("r-parameters" ,r-parameters) + ("r-performance" ,r-performance))) (native-inputs `(("r-knitr" ,r-knitr))) (home-page "https://github.com/easystats/effectsize") @@ -11749,14 +11753,14 @@ User credentials are shared with command line git through the (define-public r-usethis (package (name "r-usethis") - (version "2.0.1") + (version "2.1.0") (source (origin (method url-fetch) (uri (cran-uri "usethis" version)) (sha256 (base32 - "1j6nzzrm2m6vi1gq0d5kxnnr9d8cy88wpmgigz3inych65x9w9pg")))) + "1s40rbr2z9bilsldp8pv5abrr7n0ixyxi2qqbf4hfhs14rhigncy")))) (build-system r-build-system) (propagated-inputs `(("r-cli" ,r-cli) @@ -11764,6 +11768,7 @@ User credentials are shared with command line git through the ("r-crayon" ,r-crayon) ("r-curl" ,r-curl) ("r-desc" ,r-desc) + ("r-ellipsis" ,r-ellipsis) ("r-fs" ,r-fs) ("r-gert" ,r-gert) ("r-gh" ,r-gh) @@ -11813,14 +11818,14 @@ more information about packages, and where they were installed from.") (define-public r-remotes (package (name "r-remotes") - (version "2.4.0") + (version "2.4.1") (source (origin (method url-fetch) (uri (cran-uri "remotes" version)) (sha256 (base32 - "048lihmwksl72fg4fdmhihblj9ipxl22x9wfpgwsbsv79zjc7rfd")))) + "0xij8x4ga0r7rp2lxx9hw1zlzv48mfg56v8nf03gsw0dw6r7gmym")))) (build-system r-build-system) (native-inputs `(("r-knitr" ,r-knitr))) @@ -11857,19 +11862,19 @@ directories or URLs with their associated programs.") (define-public r-rcmdcheck (package (name "r-rcmdcheck") - (version "1.3.3") + (version "1.4.0") (source (origin (method url-fetch) (uri (cran-uri "rcmdcheck" version)) (sha256 (base32 - "1d4kzgfqy72r6b7bn1j4znyksrycgypx1jjvpv9lrmvn37mpkdhs")))) + "1l696byn3kjq2xvz4wxybzaj6ink85h4lz3a35v2132ba5yyzm5v")))) (build-system r-build-system) (propagated-inputs `(("r-callr" ,r-callr) ("r-cli" ,r-cli) - ("r-crayon" ,r-crayon) + ("r-curl" ,r-curl) ("r-desc" ,r-desc) ("r-digest" ,r-digest) ("r-pkgbuild" ,r-pkgbuild) @@ -12066,13 +12071,13 @@ and related methods.") (define-public r-rcppgsl (package (name "r-rcppgsl") - (version "0.3.9") + (version "0.3.10") (source (origin (method url-fetch) (uri (cran-uri "RcppGSL" version)) (sha256 - (base32 "0zhfkn3w5q2k2ggizrikz9an8hm90g6mr60paq0z8xgp5hpkrlk6")))) + (base32 "0lalz51q31qqy0cr227vc3msi0h47p111lzy4zs93drgl1yhh4l6")))) (properties `((upstream-name . "RcppGSL"))) (build-system r-build-system) (propagated-inputs @@ -12497,14 +12502,14 @@ to colexicographical order.") (define-public r-misc3d (package (name "r-misc3d") - (version "0.9-0") + (version "0.9-1") (source (origin (method url-fetch) (uri (cran-uri "misc3d" version)) (sha256 (base32 - "10jf5r1x588vi54bzaqgi9mgcqlkiga2c3jvmqmk3lavc8fjksd1")))) + "0r9x57s63kx9f6dgam2nhbziq8nrs9wd8pk7g76hds2kw46vnyx0")))) (build-system r-build-system) (home-page "https://cran.r-project.org/web/packages/misc3d/") (synopsis "Miscellaneous 3D Plots") @@ -12576,19 +12581,18 @@ features (e.g. local modes).") (define-public r-arm (package (name "r-arm") - (version "1.11-2") + (version "1.12-2") (source (origin (method url-fetch) (uri (cran-uri "arm" version)) (sha256 (base32 - "1grb27vayr2vhyalzfqbhx6p278r7c3l4pzi5nrz3dmnyqrbx1c3")))) + "0pagrc1vkaz460d0lvrgb4xj6gcd920f4mrc8zpzw07c3v1s2sw1")))) (build-system r-build-system) (propagated-inputs `(("r-abind" ,r-abind) ("r-coda" ,r-coda) - ("r-hmisc" ,r-hmisc) ("r-lme4" ,r-lme4) ("r-mass" ,r-mass) ("r-matrix" ,r-matrix) @@ -12759,14 +12763,14 @@ Anderson-Darling Distribution\".") (define-public r-sodium (package (name "r-sodium") - (version "1.1") + (version "1.2.0") (source (origin (method url-fetch) (uri (cran-uri "sodium" version)) (sha256 (base32 - "1zxzi8xvxnhgcd5qrylf08nz1cdq3aslrswjas440qg63ypmbf6w")))) + "0x4jb3cf1nv1spz1jc9xp8hly2b4a7nj48xr4s33jnfcpdjkmn5q")))) (properties `((upstream-name . "sodium"))) (build-system r-build-system) (inputs @@ -13015,13 +13019,13 @@ manipulate tree data.") (define-public r-rvcheck (package (name "r-rvcheck") - (version "0.2.0") + (version "0.2.1") (source (origin (method url-fetch) (uri (cran-uri "rvcheck" version)) (sha256 - (base32 "09gx29q882vh4q1qbb8z8lc3pgmpn7bk8skzcm85mrf3x3vgvkpa")))) + (base32 "09khjklvzbafd7r55496by01a9g3y291d87hpy43w44dmz9fzn9a")))) (build-system r-build-system) (propagated-inputs `(("r-biocmanager" ,r-biocmanager) @@ -13502,13 +13506,13 @@ creating color scales and calculating color distances.") (define-public r-ore (package (name "r-ore") - (version "1.6.3") + (version "1.7.0") (source (origin (method url-fetch) (uri (cran-uri "ore" version)) (sha256 - (base32 "1vh6w3arrhgkfjjjw7ci91xmz4wpfr3cmwd5zkqch89dgn07skkv")))) + (base32 "0qhbv7bynisr0prv7h0yxsxff7qdxfqza7i06xi4vn360kxx6w9g")))) (build-system r-build-system) (home-page "https://github.com/jonclayden/ore") (synopsis "R interface to the Onigmo regular expression library") @@ -13573,14 +13577,14 @@ handling.") (define-public r-grimport (package (name "r-grimport") - (version "0.9-3") + (version "0.9-4") (source (origin (method url-fetch) (uri (cran-uri "grImport" version)) (sha256 (base32 - "109mrdvq06xq3zgn9ngz0c7zzgqkv5zbpvsb2i636vmlk6y4dpkd")))) + "0y9lsvfp1350das5v5d5pkv10z0n1crc7k4zn9inr94f9s4kjjr5")))) (properties `((upstream-name . "grImport"))) (build-system r-build-system) (inputs @@ -13935,14 +13939,14 @@ limitations\" using the GNU Multiple Precision library.") (define-public r-rmpfr (package (name "r-rmpfr") - (version "0.8-4") + (version "0.8-5") (source (origin (method url-fetch) (uri (cran-uri "Rmpfr" version)) (sha256 (base32 - "0xaqbgkpnjg53zcp56c59cz5dh3jvvwqnzvyxqzy77c6yvkwy3hx")))) + "1a37zaahcyccb5kgad98z4dh9n75vffmiziv4al8axvihxqs5hjn")))) (properties `((upstream-name . "Rmpfr"))) (build-system r-build-system) (inputs @@ -15494,45 +15498,36 @@ to easily call your own custom JavaScript functions from R.") (define-public r-colourpicker (package (name "r-colourpicker") - (version "1.1.0") + (version "1.1.1") (source (origin (method url-fetch) (uri (cran-uri "colourpicker" version)) (sha256 (base32 - "1qjispj7i12m02js5cm5xlgn5lyff0kc5ybz6lbknz8q5lkbdyrd")))) + "1q1wi3g403fbzp4ys3gsjbwdc86x770cx323qgi47ca8n219kl50")))) (build-system r-build-system) (arguments - `(#:modules ((guix build utils) - (guix build r-build-system) - (srfi srfi-1) - (ice-9 popen)) - #:phases + `(#:phases (modify-phases %standard-phases (add-after 'unpack 'process-javascript (lambda* (#:key inputs #:allow-other-keys) (with-directory-excursion "inst" - (call-with-values - (lambda () - (unzip2 + (let ((mapping `((,(assoc-ref inputs "js-salvattore") - "examples/colourInput/www/salvattore.min.js") + . "examples/colourInput/www/salvattore.min.js") (,(assoc-ref inputs "js-jquery") - "htmlwidgets/lib/jquery/jquery.min.js") + . "htmlwidgets/lib/jquery/jquery.min.js") ("www/shared/colourpicker/js/colourpicker.js" - "www/shared/colourpicker/js/colourpicker.min.js")))) - (lambda (sources targets) - (for-each (lambda (source target) - (format #t "Processing ~a --> ~a~%" - source target) - (delete-file target) - (let ((minified (open-pipe* OPEN_READ "uglifyjs" source))) - (call-with-output-file target - (lambda (port) - (dump-port minified port))))) - sources targets)))) - #t))))) + . "www/shared/colourpicker/js/colourpicker.min.js")))) + (for-each (lambda (source target) + (format #true "Processing ~a --> ~a~%" + source target) + (delete-file target) + (invoke "esbuild" source "--minify" + (string-append "--outfile=" target))) + (map car mapping) + (map cdr mapping))))))))) (propagated-inputs `(("r-ggplot2" ,r-ggplot2) ("r-htmltools" ,r-htmltools) @@ -15542,15 +15537,14 @@ to easily call your own custom JavaScript functions from R.") ("r-shiny" ,r-shiny) ("r-shinyjs" ,r-shinyjs))) (native-inputs - `(("r-knitr" ,r-knitr) - ("uglifyjs" ,node-uglify-js) + `(("esbuild" ,esbuild) ("js-jquery" ,(origin (method url-fetch) - (uri "https://code.jquery.com/jquery-3.3.1.js") + (uri "https://code.jquery.com/jquery-1.11.3.js") (sha256 (base32 - "1b8zxrp6xwzpw25apn8j4qws0f6sr7qr7h2va5h1mjyfqvn29anq")))) + "1v956yf5spw0156rni5z77hzqwmby7ajwdcd6mkhb6zvl36awr90")))) ("js-salvattore" ,(origin (method url-fetch) @@ -16207,14 +16201,14 @@ additional utilities for genomic regions processing.") (define-public r-sets (package (name "r-sets") - (version "1.0-18") + (version "1.0-19") (source (origin (method url-fetch) (uri (cran-uri "sets" version)) (sha256 (base32 - "16v7650p47khqrbbw0z98llmwmmhswqmhri0n7nrfhdqwmby1lbl")))) + "18185rm458nlifzrp73fjrjvksmm5dvn5ygs949kdzdln1myb4xf")))) (properties `((upstream-name . "sets"))) (build-system r-build-system) (home-page "https://cran.r-project.org/web/packages/sets") @@ -16469,14 +16463,14 @@ univariate class intervals for mapping or other graphics purposes.") (define-public r-spdata (package (name "r-spdata") - (version "0.3.10") + (version "2.0.1") (source (origin (method url-fetch) (uri (cran-uri "spData" version)) (sha256 (base32 - "0c3kg2daz65znnmcaf5l108c88anzlfrsjlnmv2kxqr1lx8z9zl5")))) + "1z4hp5ivwzyvl8mkp98j2ng1cl1xksqbjxv85vdlqfqjwpia6df6")))) (properties `((upstream-name . "spData"))) (build-system r-build-system) (propagated-inputs @@ -16522,14 +16516,14 @@ sampling.") (define-public r-deldir (package (name "r-deldir") - (version "0.2-10") + (version "1.0-6") (source (origin (method url-fetch) (uri (cran-uri "deldir" version)) (sha256 (base32 - "08ij6zb6id71zk6gzs9z779y49y41c2gpi7p7mljnlw7py92g8k5")))) + "1igq0l2knsbhizncgydcsidgkvvlwwlkrifbcdyhnzk0bhrdixkd")))) (build-system r-build-system) (native-inputs `(("gfortran" ,gfortran))) (home-page "https://cran.r-project.org/web/packages/deldir") @@ -16572,14 +16566,14 @@ high-performance functions are provided here.") (define-public r-s2 (package (name "r-s2") - (version "1.0.6") + (version "1.0.7") (source (origin (method url-fetch) (uri (cran-uri "s2" version)) (sha256 (base32 - "1xd42bpbm090dqlldavbn6c1h1mfwhlws9536avan00w3szlxk56")))) + "0gwydn6wdl675ydkcckrci6ylcx30qn8nfhmrp4qx4r9mv3c2410")))) (properties `((upstream-name . "s2"))) (build-system r-build-system) (propagated-inputs @@ -16603,14 +16597,14 @@ information about geometries.") (define-public r-sf (package (name "r-sf") - (version "1.0-2") + (version "1.0-3") (source (origin (method url-fetch) (uri (cran-uri "sf" version)) (sha256 (base32 - "0hh54krf4gjwrzxj2r3p5q7amdf8kblv8nm7hmbwmfv1rs30i1gc")))) + "1y1im0wxqx0vqas6ggmi6p1dyp98l895jy3asxky4vq5wpjfrqrf")))) (build-system r-build-system) (inputs `(("gdal" ,gdal) @@ -16693,14 +16687,14 @@ spanning tree.") (define-public r-adegenet (package (name "r-adegenet") - (version "2.1.4") + (version "2.1.5") (source (origin (method url-fetch) (uri (cran-uri "adegenet" version)) (sha256 (base32 - "0sxbw5l92xmkazndxbqaa2cxmgk8bqzzbk77q9li850s2i1fdssp")))) + "1wjp31634n6z6wglf4z3ydrhhn5jmpwwckmp3n2b0v5f3p2fivp4")))) (build-system r-build-system) (propagated-inputs `(("r-ade4" ,r-ade4) @@ -16713,7 +16707,6 @@ spanning tree.") ("r-reshape2" ,r-reshape2) ("r-seqinr" ,r-seqinr) ("r-shiny" ,r-shiny) - ("r-spdep" ,r-spdep) ("r-vegan" ,r-vegan))) (home-page "https://github.com/thibautjombart/adegenet") (synopsis "Exploratory analysis of genetic and genomic data") @@ -17142,14 +17135,14 @@ authoring books and technical documents with R Markdown.") (define-public r-optparse (package (name "r-optparse") - (version "1.6.6") + (version "1.7.1") (source (origin (method url-fetch) (uri (cran-uri "optparse" version)) (sha256 (base32 - "1l301dy3gc8pn7j00awcjh41wmc1ks9kswak255kbsa6f54rsxsi")))) + "1rqz0y4r94y3mwbb9kyz97cjqpnprka96qbncvbnbmgg2d630kij")))) (build-system r-build-system) (propagated-inputs `(("r-getopt" ,r-getopt))) @@ -17331,14 +17324,14 @@ and accessing fields.") (define-public r-svmisc (package (name "r-svmisc") - (version "1.1.4") + (version "1.2.3") (source (origin (method url-fetch) (uri (cran-uri "svMisc" version)) (sha256 (base32 - "0y8mhiblyzwads4gf4whmxi7c6wdmqs3ahbj132l79bbdk40p83a")))) + "1r3kih5bnr4plnzdn5f2gg3xl3krgyl7gkdlf58a2l8vk13j3m9d")))) (properties `((upstream-name . "svMisc"))) (build-system r-build-system) (native-inputs @@ -17591,14 +17584,14 @@ package.") (define-public r-yulab-utils (package (name "r-yulab-utils") - (version "0.0.2") + (version "0.0.4") (source (origin (method url-fetch) (uri (cran-uri "yulab.utils" version)) (sha256 (base32 - "1haq6k0r64gs76p2vvrm42m64r8s32kzyz573pw9789y32zn0s5q")))) + "1bj93gnj7j4b7dgkbr5v22rsbwfcw5dvipl5irmidaakvrihd19q")))) (properties `((upstream-name . "yulab.utils"))) (build-system r-build-system) (home-page "https://cran.r-project.org/package=yulab.utils") @@ -18416,14 +18409,14 @@ more generic data visualisation.") (define-public r-pmcmr (package (name "r-pmcmr") - (version "4.3") + (version "4.4") (source (origin (method url-fetch) (uri (cran-uri "PMCMR" version)) (sha256 (base32 - "09bvdj2h1086r2cgy3myrhlylplxxlliv8nwx09c8kb1vn02i2ij")))) + "05n13pp5yff6pzk4ry07crddfaj3jlglrd1vkcnacyd8jpaxkd77")))) (properties `((upstream-name . "PMCMR"))) (build-system r-build-system) (home-page "https://cran.r-project.org/web/packages/PMCMR/") @@ -18721,14 +18714,14 @@ multicore machines.") (define-public r-mcmcpack (package (name "r-mcmcpack") - (version "1.5-0") + (version "1.6-0") (source (origin (method url-fetch) (uri (cran-uri "MCMCpack" version)) (sha256 (base32 - "1khavqsimiwbfq7gyw5jyj67jxfd579pnc7mngnd655zc8yzspvr")))) + "16zjx8yz29ii75wfxj3p562l657bng8jnwzp2b54s7fiaws4kfdm")))) (properties `((upstream-name . "MCMCpack"))) (build-system r-build-system) (propagated-inputs @@ -19007,14 +19000,14 @@ experiments in a well-organized and reproducible way.") (define-public r-clue (package (name "r-clue") - (version "0.3-59") + (version "0.3-60") (source (origin (method url-fetch) (uri (cran-uri "clue" version)) (sha256 (base32 - "0ychvjbqkcgqdp5gy4hsi4297phywd7fj89y3yi5ckmnmjb39kjm")))) + "0apgpdnn74mqg2bnr8yjyxgyvdl411h0r2b1r2xd67k21pyxs8bd")))) (build-system r-build-system) (propagated-inputs `(("r-cluster" ,r-cluster))) (home-page "https://cran.r-project.org/web/packages/clue/") @@ -19031,16 +19024,18 @@ consensus and secondary clusterings.") (define-public r-sitmo (package (name "r-sitmo") - (version "2.0.1") + (version "2.0.2") (source (origin (method url-fetch) (uri (cran-uri "sitmo" version)) (sha256 (base32 - "0apdhwy3kxs39agsbvx5vn3xsgb22bf3jrwmr2cmqk9kmxbx740c")))) + "1hm89zi38ldgbskyx1cn7gm87yqy7zrxli8q05a36y1ndvazi3j4")))) (build-system r-build-system) (propagated-inputs `(("r-rcpp" ,r-rcpp))) + (native-inputs + `(("r-knitr" ,r-knitr))) (home-page "https://github.com/coatless/sitmo/") (synopsis "Parallel pseudo random number generator header files") (description @@ -19790,14 +19785,14 @@ both R code and compiled C/C++/FORTRAN code.") (define-public r-systemfonts (package (name "r-systemfonts") - (version "1.0.2") + (version "1.0.3") (source (origin (method url-fetch) (uri (cran-uri "systemfonts" version)) (sha256 (base32 - "1a9nzd4nqawr6ni3mw7xc2yq77fb2f91aarnc906mq26510rdb11")))) + "1fmv1ni77ncz6rrm4iv8a7l6pbqnk2ri0yzad2bs943gxbarjz34")))) (properties `((upstream-name . "systemfonts"))) (build-system r-build-system) (propagated-inputs @@ -19848,14 +19843,14 @@ emphasize hidden group structures in networks or focus on specific nodes.") (define-public r-terra (package (name "r-terra") - (version "1.3-22") + (version "1.4-11") (source (origin (method url-fetch) (uri (cran-uri "terra" version)) (sha256 (base32 - "1z5zql68q4n81ccpl02hndhbavhhqs65bli1hjxlqdwdq192whkh")))) + "08gx28ad00adz4fqch3fx27s6yd0rpjhmdy6b83d1wnlzzgc13qa")))) (properties `((upstream-name . "terra"))) (build-system r-build-system) (inputs @@ -19865,8 +19860,7 @@ emphasize hidden group structures in networks or focus on specific nodes.") ("sqlite" ,sqlite) ; needed for proj ("zlib" ,zlib))) (propagated-inputs - `(("r-raster" ,r-raster) - ("r-rcpp" ,r-rcpp))) + `(("r-rcpp" ,r-rcpp))) (native-inputs `(("pkg-config" ,pkg-config))) (home-page "https://rspatial.org/terra") @@ -19973,18 +19967,19 @@ in pipelines.") (define-public r-parameters (package (name "r-parameters") - (version "0.14.0") + (version "0.15.0") (source (origin (method url-fetch) (uri (cran-uri "parameters" version)) (sha256 (base32 - "03x2h8izbpz9cq25i0a6dh99m26a9isgpv4kxsfkx97qzlh9cd67")))) + "0f06bwlc1g0xdyhdqzx8plfx1jwk8a9j4lcbl91wjsil8wja0bkl")))) (properties `((upstream-name . "parameters"))) (build-system r-build-system) (propagated-inputs `(("r-bayestestr" ,r-bayestestr) + ("r-datawizard" ,r-datawizard) ("r-insight" ,r-insight))) (native-inputs `(("r-knitr" ,r-knitr))) @@ -20137,13 +20132,13 @@ programming problems.") (define-public r-desolve (package (name "r-desolve") - (version "1.29") + (version "1.30") (source (origin (method url-fetch) (uri (cran-uri "deSolve" version)) (sha256 - (base32 "02hrd31ky9id7q2bwkj436j4fj4xbs3j9sfmyi1nl7hml5dy2vr6")))) + (base32 "0j7mmg1mimdpql8f4i9dn920ciyyq80a5qnc4fq5xn5lyrx5vxir")))) (properties `((upstream-name . "deSolve"))) (build-system r-build-system) (native-inputs @@ -22327,18 +22322,19 @@ variable observed over time.") (define-public r-fda (package (name "r-fda") - (version "5.1.9") + (version "5.4.0") (source (origin (method url-fetch) (uri (cran-uri "fda" version)) (sha256 (base32 - "0yjrjsv55bcwqn2yxjgj3hn17wfvjvgngfw9xv3w802i52yz9gf8")))) + "000flssclb2c1sfm2czyp1qxrfrl9rp6bd8sw87ign8165maplqf")))) (properties `((upstream-name . "fda"))) (build-system r-build-system) (propagated-inputs - `(("r-fds" ,r-fds) + `(("r-desolve" ,r-desolve) + ("r-fds" ,r-fds) ("r-matrix" ,r-matrix))) (home-page "https://www.functionaldata.org") (synopsis "Functional data analysis") @@ -22568,14 +22564,14 @@ API; see the package vignette for details.") (define-public r-actuar (package (name "r-actuar") - (version "3.1-4") + (version "3.2-0") (source (origin (method url-fetch) (uri (cran-uri "actuar" version)) (sha256 (base32 - "0m9b4787a866cddf1skjz6634237dvg1i5qyqss4sgvcrbmx3hw0")))) + "015brjjgmkwmjajdjdw8gs02jrd96if425pk9a97d499hzsq3xds")))) (properties `((upstream-name . "actuar"))) (build-system r-build-system) (propagated-inputs `(("r-expint" ,r-expint))) @@ -22711,17 +22707,18 @@ it may be seen by an animal with less acute vision.") (define-public r-caret (package (name "r-caret") - (version "6.0-88") + (version "6.0-90") (source (origin (method url-fetch) (uri (cran-uri "caret" version)) (sha256 (base32 - "174cyyhsw8s6jp80spmi40qq9sw5ys0r58v4ikp53kiw1dhd247s")))) + "1g36m06hp2fxxwv155bwbqlf97xhcia1lmg3axg6d74kgpns8lg8")))) (build-system r-build-system) (propagated-inputs - `(("r-foreach" ,r-foreach) + `(("r-e1071" ,r-e1071) + ("r-foreach" ,r-foreach) ("r-ggplot2" ,r-ggplot2) ("r-lattice" ,r-lattice) ("r-modelmetrics" ,r-modelmetrics) @@ -23040,14 +23037,14 @@ Edition), John Wiley and Sons.") (define-public r-anthropometry (package (name "r-anthropometry") - (version "1.15") + (version "1.16") (source (origin (method url-fetch) (uri (cran-uri "Anthropometry" version)) (sha256 (base32 - "03xw0ggb2qqlldrv0qpjwmncnari742habb46im7y65bhgnr2awx")))) + "0iqlmp9vig4qdavs37kislqxwhk0c0pgsn1kwz3mm75nylxmpbp0")))) (properties `((upstream-name . "Anthropometry"))) (build-system r-build-system) (propagated-inputs @@ -23967,14 +23964,14 @@ errors; tetrachoric and biserial correlations are special cases.") (define-public r-msm (package (name "r-msm") - (version "1.6.8") + (version "1.6.9") (source (origin (method url-fetch) (uri (cran-uri "msm" version)) (sha256 (base32 - "1d32y8f0vb2dfv3999liigpns788j145nrvd1xpxb9i2lsg8mwgk")))) + "08vhazswyxr3y1zb9y60mbg3bappzlizxml8s08p65mh82xxkz5f")))) (properties `((upstream-name . "msm"))) (build-system r-build-system) (propagated-inputs @@ -24070,20 +24067,19 @@ actuarial models such as pension mathematics.") (define-public r-sem (package (name "r-sem") - (version "3.1-11") + (version "3.1-13") (source (origin (method url-fetch) (uri (cran-uri "sem" version)) (sha256 (base32 - "03j3ig6fy34pi6nwfq9w8f5m555lilw5skr1vn6ay4yvjmvavc9k")))) + "0r9g4j0w6q4qy9jl9gkjkihml4109ymg3y6zmhyg806q19qryx07")))) (properties `((upstream-name . "sem"))) (build-system r-build-system) (propagated-inputs `(("r-boot" ,r-boot) ("r-mass" ,r-mass) - ("r-matrixcalc" ,r-matrixcalc) ("r-mi" ,r-mi))) (home-page "https://cran.r-project.org/package=sem") (synopsis "Structural equation models") @@ -24190,14 +24186,14 @@ and analyze Stan models.") (define-public r-rpf (package (name "r-rpf") - (version "1.0.8") + (version "1.0.11") (source (origin (method url-fetch) (uri (cran-uri "rpf" version)) (sha256 (base32 - "039r6yz2ax7i9sv8vi98yg7llwb966ay6mrifpmp6q3xh1f634kl")))) + "1yr1i7kswq57mcxv05lh7bvbicz1djqxcl6f13dlgsf3ww56gzg1")))) (properties `((upstream-name . "rpf"))) (build-system r-build-system) (propagated-inputs @@ -24382,21 +24378,20 @@ network, tree, dendrogram, and Sankey graphs from R using data frames.") (define-public r-qgraph (package (name "r-qgraph") - (version "1.6.9") + (version "1.9") (source (origin (method url-fetch) (uri (cran-uri "qgraph" version)) (sha256 (base32 - "153bqfmsrghkg7598nfr57r3cxv6dn6ir084njl2sqq5np0sj9di")))) + "1ahhzp64jdgki5p2wga5mn8a2n1x2zldgpilrpf7hy5l9nf4imz1")))) (properties `((upstream-name . "qgraph"))) (build-system r-build-system) (propagated-inputs `(("r-abind" ,r-abind) ("r-colorspace" ,r-colorspace) ("r-corpcor" ,r-corpcor) - ("r-dplyr" ,r-dplyr) ("r-fdrtool" ,r-fdrtool) ("r-ggplot2" ,r-ggplot2) ("r-glasso" ,r-glasso) @@ -25691,14 +25686,14 @@ Mean Test, Durbin-Watson statistic etc.") (define-public r-rcdd (package (name "r-rcdd") - (version "1.2-2") + (version "1.4") (source (origin (method url-fetch) (uri (cran-uri "rcdd" version)) (sha256 (base32 - "0pzpbqnlgzr240iici70278py5wnbbxkzlgn112f9wv5ga3riric")))) + "02jj1lpk4kvjh5484lbdrdlx2ffk9qdxys7afyakd5kl6swqalz2")))) (properties `((upstream-name . "rcdd"))) (build-system r-build-system) @@ -25818,14 +25813,14 @@ estimation.") (define-public r-optimx (package (name "r-optimx") - (version "2021-6.12") + (version "2021-10.12") (source (origin (method url-fetch) (uri (cran-uri "optimx" version)) (sha256 (base32 - "059md564p2pk5nis9kbcn1kw2fw130vg53fxlr5xzpv1c9gfhq3k")))) + "0hvrpfya767vp3anmb8ih516v4zz1sv4h193rn93kyjydf2lqf1r")))) (properties `((upstream-name . "optimx"))) (build-system r-build-system) (propagated-inputs `(("r-numderiv" ,r-numderiv))) @@ -26260,14 +26255,14 @@ input.") (define-public r-lightgbm (package (name "r-lightgbm") - (version "3.2.1") + (version "3.3.0") (source (origin (method url-fetch) (uri (cran-uri "lightgbm" version)) (sha256 (base32 - "1136di7k3gs9kk7vd9bc3mdm0qrx3a546ngar8inmgyhi0zk6pkd")))) + "1sgimzax84rag02gqv2qag2cg8mmhkv71xydawg7bkxk95dycbc2")))) (properties `((upstream-name . "lightgbm"))) (build-system r-build-system) (propagated-inputs @@ -26541,13 +26536,13 @@ doi.org/10.1007/s10115-013-0679-x} for details.") (define-public r-memuse (package (name "r-memuse") - (version "4.1-0") + (version "4.2-1") (source (origin (method url-fetch) (uri (cran-uri "memuse" version)) (sha256 (base32 - "1bbjp8y0ji71956fbaxiil7ynq2nkmmgz7i9xps83m3bbp5d3mjq")))) + "1wvwnjaaiv2647561z2b55dss35033ildx4kk8hzxfzgsjmdpsgm")))) (properties `((upstream-name . "memuse"))) (build-system r-build-system) (home-page "https://github.com/shinra-dev/memuse") @@ -26630,14 +26625,14 @@ and predictions of any machine learning model. Implemented methods are: (define-public r-goftest (package (name "r-goftest") - (version "1.2-2") + (version "1.2-3") (source (origin (method url-fetch) (uri (cran-uri "goftest" version)) (sha256 (base32 - "0ivnkqhv5xgiv05dm648nngacymd8x8g0fyppv3bc0mhcqk9k5z4")))) + "06bz6k7smr4jbvzmb73qc5fkf4my59w5gbl18wlmpkkymsv78prs")))) (properties `((upstream-name . "goftest"))) (build-system r-build-system) (home-page "https://github.com/baddstats/goftest") @@ -26743,14 +26738,14 @@ package.") (define-public r-spatstat-geom (package (name "r-spatstat-geom") - (version "2.2-2") + (version "2.3-0") (source (origin (method url-fetch) (uri (cran-uri "spatstat.geom" version)) (sha256 (base32 - "0rx28g064641yrk2h23qpyc0bgs20lpsnqmyl1d06530ga6r1qc3")))) + "1iz9zi45nli5lf96ng6bqqbl4ix3zxzlfclkg4cdb9h98nj4c5vv")))) (properties `((upstream-name . "spatstat.geom"))) (build-system r-build-system) (propagated-inputs @@ -27323,14 +27318,14 @@ the @code{survival} package.") (define-public r-exactranktests (package (name "r-exactranktests") - (version "0.8-32") + (version "0.8-34") (source (origin (method url-fetch) (uri (cran-uri "exactRankTests" version)) (sha256 (base32 - "0p7h7w470p5qpsbrhw12zlsshyai56za5dsdva8cf9sikn0955qr")))) + "1i4mwz61mjlh1ai3dww2pjkicx9ww8c4mljnr8xlawh91479lva9")))) (properties `((upstream-name . "exactRankTests"))) (build-system r-build-system) @@ -27519,14 +27514,14 @@ model.") (define-public r-igraph (package (name "r-igraph") - (version "1.2.6") + (version "1.2.7") (source (origin (method url-fetch) (uri (cran-uri "igraph" version)) (sha256 (base32 - "0vf7wrx77cdiav8724cw8gchrn0y9wvywphf5km4pa7xcqhsf3b4")))) + "1r8vmqm2rq1jnkh8axr4gw1hbj34ca1dil154qp037imfcra1h95")))) (build-system r-build-system) (native-inputs `(("gfortran" ,gfortran))) @@ -27551,14 +27546,14 @@ more.") (define-public r-workflows (package (name "r-workflows") - (version "0.2.3") + (version "0.2.4") (source (origin (method url-fetch) (uri (cran-uri "workflows" version)) (sha256 (base32 - "0bca4s49qabam4ny8vckxcghj3z0xfhwfhs5h1136kihrr5pm6mw")))) + "1sxrgza922p137z41jcj2iwk19lxzwh6kp4kz7h9kw0b8rvfqwab")))) (properties `((upstream-name . "workflows"))) (build-system r-build-system) (propagated-inputs @@ -28066,14 +28061,14 @@ vignettes in all common formats.") (define-public r-tidytext (package (name "r-tidytext") - (version "0.3.1") + (version "0.3.2") (source (origin (method url-fetch) (uri (cran-uri "tidytext" version)) (sha256 (base32 - "182gad5pzz6zvhbla3d496sxwiszc1qz8kzzkksaacwpsrc61f9h")))) + "0as7lscjl6ywk85almmb4f71vxmgkfds46g52ryggkg2isksvq3g")))) (properties `((upstream-name . "tidytext"))) (build-system r-build-system) (propagated-inputs @@ -28219,14 +28214,14 @@ use.") (define-public r-tidymodels (package (name "r-tidymodels") - (version "0.1.3") + (version "0.1.4") (source (origin (method url-fetch) (uri (cran-uri "tidymodels" version)) (sha256 (base32 - "18vz0xsgxrfzcfxpvilhj1w0f4v4lx5ws37nwmy40lhv3v05nxn8")))) + "18krycdn0h1i8swrq6bgj8qnb200rr0pqhr6maq3h1jc66x0y7nd")))) (properties `((upstream-name . "tidymodels"))) (build-system r-build-system) (propagated-inputs @@ -28236,6 +28231,7 @@ use.") ("r-dials" ,r-dials) ("r-dplyr" ,r-dplyr) ("r-ggplot2" ,r-ggplot2) + ("r-hardhat" ,r-hardhat) ("r-infer" ,r-infer) ("r-modeldata" ,r-modeldata) ("r-parsnip" ,r-parsnip) @@ -28394,14 +28390,14 @@ including: (define-public r-perm (package (name "r-perm") - (version "1.0-0.0") + (version "1.0-0.2") (source (origin (method url-fetch) (uri (cran-uri "perm" version)) (sha256 (base32 - "0075awl66ynv10vypg63fcxk33qzvxddrp8mi4w08ysvimcyxijk")))) + "182ac1y91yzb34zwdcmx5fdfr5z0cha0gx2bgk36gwxhgfc994kj")))) (properties `((upstream-name . "perm"))) (build-system r-build-system) (home-page "https://cran.r-project.org/web/packages/perm/") @@ -28417,14 +28413,14 @@ covariate (usually group indicator) and the scores.") (define-public r-qtl (package (name "r-qtl") - (version "1.48-1") + (version "1.50") (source (origin (method url-fetch) (uri (cran-uri "qtl" version)) (sha256 (base32 - "098mgmfj8ndi8yipr9b3f6gbbh78cgp9j7y561nlnhrnyc8bsih9")))) + "1mcy9wlp5lj5f3z4mf3n5li7x32vj67rmhjnzsp8fhfw0ipnaf1d")))) (build-system r-build-system) (home-page "https://rqtl.org/") (synopsis "R package for analyzing QTL experiments in genetics") @@ -28440,12 +28436,12 @@ genome scans.") (define-public r-qtl2 (package (name "r-qtl2") - (version "0.24") + (version "0.28") (source (origin (method url-fetch) (uri (cran-uri "qtl2" version)) (sha256 - (base32 "1558khh0zkwm0rdk87krv9836krvwv5h7ymlz9bsrgcvypyr9186")))) + (base32 "0ppc6dzlq77mppxc6bczai9gi40jrbxd1466y2cn2s8a4ah1jg9y")))) (build-system r-build-system) (propagated-inputs `(("r-data-table" ,r-data-table) @@ -28567,13 +28563,13 @@ other R users.") (define-public r-seurat (package (name "r-seurat") - (version "4.0.4") + (version "4.0.5") (source (origin (method url-fetch) (uri (cran-uri "Seurat" version)) (sha256 (base32 - "1pa2v29mx39swblzwzqc7rpql2rizhi2nj426r1i63wyla6lcxc0")))) + "18svlpfbgs5vdzw2jyg99kj0jacag6dwwhjdg1zpmrh0fm0praxg")))) (properties `((upstream-name . "Seurat"))) (build-system r-build-system) (propagated-inputs @@ -28768,14 +28764,14 @@ parabolic or user defined by custom scale factors.") (define-public r-decon (package (name "r-decon") - (version "1.2-4") + (version "1.3-4") (source (origin (method url-fetch) (uri (cran-uri "decon" version)) (sha256 (base32 - "1v4l0xq29rm8mks354g40g9jxn0didzlxg3g7z08m0gvj29zdj7s")))) + "036cv56wf42q2p3d5h15hbrp5rc29xxy20qwv4k1qzhkq6hmw0qs")))) (properties `((upstream-name . "decon"))) (build-system r-build-system) (native-inputs @@ -29386,14 +29382,14 @@ clusterings as resolution increases.") (define-public r-textshaping (package (name "r-textshaping") - (version "0.3.5") + (version "0.3.6") (source (origin (method url-fetch) (uri (cran-uri "textshaping" version)) (sha256 (base32 - "06bdc5wxvgv38fnzpyjj9p62ifpfshaangkn96gw05yxn11s46h0")))) + "1niaj1dh09rqrg9hrh98ddnc0f2nkyq9iizv24lcwm9gjs3w1ql0")))) (properties `((upstream-name . "textshaping"))) (build-system r-build-system) (inputs @@ -30087,14 +30083,14 @@ and formatted text files with additional meta-data, such including @code{.csv}, (define-public r-lwgeom (package (name "r-lwgeom") - (version "0.2-7") + (version "0.2-8") (source (origin (method url-fetch) (uri (cran-uri "lwgeom" version)) (sha256 (base32 - "1qgszbw03haqfjdc07ivkg8r0yd50ldkiqq27ppkaibw7mgiak5k")))) + "0d4b1djwrzla91mmyya2m1250mb44fzmq3d36w5mk81d4bg952pl")))) (properties `((upstream-name . "lwgeom"))) (build-system r-build-system) (inputs @@ -30417,14 +30413,14 @@ quantitative real-time polymerase chain reaction (qPCR).") (define-public r-textplot (package (name "r-textplot") - (version "0.2.0") + (version "0.2.1") (source (origin (method url-fetch) (uri (cran-uri "textplot" version)) (sha256 (base32 - "1fhnwbcgkliq71lry21762djhlbap1qg4mgil0np46aa6619l21m")))) + "10nxh9axhy6kyp6f3rz7smq08yl35ydx9jx47bs7i0bmcl2kwxvl")))) (properties `((upstream-name . "textplot"))) (build-system r-build-system) (propagated-inputs @@ -30800,14 +30796,14 @@ Apache2.") (define-public r-exactextractr (package (name "r-exactextractr") - (version "0.7.0") + (version "0.7.1") (source (origin (method url-fetch) (uri (cran-uri "exactextractr" version)) (sha256 (base32 - "1fwbl0rn0990cs2rvvwjbflp9mall6hjkindpjmdcy6qafiviid6")))) + "1gc1p9pgazhblk8jgykxxjpblylbaq5r9hdlw3ilz5g45yjjwcnc")))) (properties `((upstream-name . "exactextractr"))) (build-system r-build-system) (inputs `(("geos" ,geos))) @@ -30828,14 +30824,14 @@ the @code{raster} package that is suitable for extracting raster values using (define-public r-stringfish (package (name "r-stringfish") - (version "0.15.2") + (version "0.15.4") (source (origin (method url-fetch) (uri (cran-uri "stringfish" version)) (sha256 (base32 - "0m8485p1gb5z2n2g5nyr38zixw4iv8xxm7bxspxlxvx6alhn03pn")))) + "1n67y9vgv8vb8qd091d1wm5sgbalcm2avh2fz0hd3mmglpkr83wf")))) (properties `((upstream-name . "stringfish"))) (build-system r-build-system) (propagated-inputs @@ -31019,14 +31015,14 @@ between them.") (define-public r-keras (package (name "r-keras") - (version "2.6.0") + (version "2.6.1") (source (origin (method url-fetch) (uri (cran-uri "keras" version)) (sha256 (base32 - "1pgdcypp9x9dw7aa5ka7qqgd24jdcp3ja94jpm7j6l6j4930k5vd")))) + "0xg4n9sp1pf2yfbba3lb3fzr5gbdwlhv4j1h5njfqmjy5984b8ij")))) (properties `((upstream-name . "keras"))) (build-system r-build-system) (propagated-inputs @@ -31131,14 +31127,14 @@ Bessel K function.") (define-public r-ztpln (package (name "r-ztpln") - (version "0.1.1") + (version "0.1.2") (source (origin (method url-fetch) (uri (cran-uri "ztpln" version)) (sha256 (base32 - "18rbfdp22jaxg4nkqzj2393nhjdl1gzv4xhmr6aci76ymdixsfnl")))) + "1b22m72a8117yrgq5k1gzsrbx6yrsrj7bpd49lh7x3vbaz56c0wr")))) (properties `((upstream-name . "ztpln"))) (build-system r-build-system) (propagated-inputs @@ -31238,20 +31234,21 @@ to archive and assign DOIs to data, software, figures, and more.") (define-public r-dismo (package (name "r-dismo") - (version "1.3-3") + (version "1.3-5") (source (origin (method url-fetch) (uri (cran-uri "dismo" version)) (sha256 (base32 - "1jj9d78f251bxgrwbv1ycn677qnhvl40bfan12x8fhlaq4d36rgx")))) + "1rqf6h4imbqvs7hjd1k4my6154wg0qnmnp5byan403rcshr1jbl1")))) (properties `((upstream-name . "dismo"))) (build-system r-build-system) (propagated-inputs `(("r-raster" ,r-raster) ("r-rcpp" ,r-rcpp) - ("r-sp" ,r-sp))) + ("r-sp" ,r-sp) + ("r-terra" ,r-terra))) (home-page "https://rspatial.org/raster/sdm/") (synopsis "Species distribution modeling") (description @@ -31298,14 +31295,14 @@ fully reproducible.") (define-public r-paws-common (package (name "r-paws-common") - (version "0.3.12") + (version "0.3.13") (source (origin (method url-fetch) (uri (cran-uri "paws.common" version)) (sha256 (base32 - "1khq1rv0yij4l0vi2x6hslnzpsd6m5n6nipfac7g3na9ah93h8i9")))) + "15sj7yw4hj76minr00xhgzkg1rwb7gsr2ib9q4d053i5f3jcy54a")))) (properties `((upstream-name . "paws.common"))) (build-system r-build-system) (propagated-inputs @@ -32128,13 +32125,13 @@ Monte Carlo approach implemented in JAGS.") (define-public r-logger (package (name "r-logger") - (version "0.2.1") + (version "0.2.2") (source (origin (method url-fetch) (uri (cran-uri "logger" version)) (sha256 - (base32 "0p607da2rdrfj9sbrrq9hpqp26nyj3imd1590c13bxskqfhv0sz8")))) + (base32 "08kym5i5fvbf5xhh9qdszp4jdgyc7j7zpnwzy68wabqz73aff6sg")))) (properties `((upstream-name . "logger"))) (build-system r-build-system) (native-inputs `(("r-knitr" ,r-knitr))) |