diff options
Diffstat (limited to 'gnu/packages/cran.scm')
| -rw-r--r-- | gnu/packages/cran.scm | 316 |
1 files changed, 200 insertions, 116 deletions
diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index eac6293fc9..5a3762fd7a 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -113,14 +113,14 @@ are not used.") (define-public r-sys (package (name "r-sys") - (version "3.0") + (version "3.1") (source (origin (method url-fetch) (uri (cran-uri "sys" version)) (sha256 (base32 - "1g0q1f56qmp3x5gja19qrmgk3j4d89yp16z1ziv1jn5p4dlmfpxh")))) + "0aj3wcyah3r7c9s3rbs0c8nifd4vqmkzg9fqkrb7f838ww0qw24q")))) (build-system r-build-system) (home-page "https://github.com/jeroen/sys") (synopsis "Powerful and reliable tools for running system commands in R") @@ -317,14 +317,14 @@ such as copy/paste from an R session.") (define-public r-callr (package (name "r-callr") - (version "3.1.1") + (version "3.2.0") (source (origin (method url-fetch) (uri (cran-uri "callr" version)) (sha256 (base32 - "15l1qfa3aigba2ghgr2gwcjjy7anagrwg8khsd36fymwkmqj5g69")))) + "1s5h2k7c1vgbry90xczin66q89cbkc6mvh4679l5rsz83087pd2b")))) (build-system r-build-system) (propagated-inputs `(("r-r6" ,r-r6) @@ -340,14 +340,14 @@ that.") (define-public r-readxl (package (name "r-readxl") - (version "1.3.0") + (version "1.3.1") (source (origin (method url-fetch) (uri (cran-uri "readxl" version)) (sha256 (base32 - "1p7snd8lznyinp0nyg6bsqwn9alh3pnnj77bfg865ingdl1d2yc3")))) + "15mambxr8c7k2ikdfsl1w3vxvm54dsnk0cl1qvks6iig7rql3d14")))) (build-system r-build-system) (propagated-inputs `(("r-cellranger" ,r-cellranger) @@ -394,21 +394,20 @@ into a pipeline of data manipulation and visualisation.") (define-public r-httpuv (package (name "r-httpuv") - (version "1.4.5.1") + (version "1.5.0") (source (origin (method url-fetch) (uri (cran-uri "httpuv" version)) (sha256 (base32 - "0mqd40jckdpkjw1jjd860cdwkb03l6dkh931maijfdaqr1w9hwvn")))) + "19m9514yj5sg0rz1zvi8w1z98srnrql4iirgr794fkaap6bs7i2f")))) (build-system r-build-system) - (native-inputs - `(("r-rcpp" ,r-rcpp) - ("pkg-config" ,pkg-config))) (propagated-inputs `(("r-bh" ,r-bh) ("r-later" ,r-later) - ("r-promises" ,r-promises))) + ("r-promises" ,r-promises) + ("r-r6" ,r-r6) + ("r-rcpp" ,r-rcpp))) (home-page "https://github.com/rstudio/httpuv") (synopsis "HTTP and WebSocket server library for R") (description @@ -1082,14 +1081,14 @@ component analysis (with robust methods, and parallelized functions).") (define-public r-ape (package (name "r-ape") - (version "5.2") + (version "5.3") (source (origin (method url-fetch) (uri (cran-uri "ape" version)) (sha256 (base32 - "05b4yka5cirdgxd4d7iiaqvr428pk3j6n9q6dvg5j38kdj2h5sr7")))) + "08wbk1kxhs32bmmvqlqanbdg1w235amd35k8m00fngsj9h9xzc08")))) (build-system r-build-system) (propagated-inputs `(("r-lattice" ,r-lattice) @@ -1138,13 +1137,13 @@ XML. To learn more about the Abbyy OCR API, see @url{http://ocrsdk.com/}.") (define-public r-colorspace (package (name "r-colorspace") - (version "1.4-0") + (version "1.4-1") (source (origin (method url-fetch) (uri (cran-uri "colorspace" version)) (sha256 - (base32 "0mpmvz2sycjp4c9y3v3qin7mdjy812hwi7cyjnblcw6xb1ckq06f")))) + (base32 "0wyny3ah2d74hqv80s6imrarpna09gq3j9rjnz6zx2qg0lx72gb9")))) (build-system r-build-system) (home-page "https://cran.r-project.org/web/packages/colorspace") (synopsis "Color space manipulation") @@ -1158,14 +1157,14 @@ colors are provided.") (define-public r-glue (package (name "r-glue") - (version "1.3.0") + (version "1.3.1") (source (origin (method url-fetch) (uri (cran-uri "glue" version)) (sha256 (base32 - "1vhw5497lpfr4m8lcx9bs0fgdp4ax0sycrk6n8yksp33qd25m7kq")))) + "1a1ycg9r3gd91visp49q49rsrdgyf8kr9dxdy3hk99kikn4z5hag")))) (build-system r-build-system) (home-page "https://github.com/tidyverse/glue") (synopsis "Interpreted string literals") @@ -1272,14 +1271,14 @@ processes. Most of its code is based on the @code{psutil} Python package.") (define-public r-pkgbuild (package (name "r-pkgbuild") - (version "1.0.2") + (version "1.0.3") (source (origin (method url-fetch) (uri (cran-uri "pkgbuild" version)) (sha256 (base32 - "1i1rrax7x7r2bplig5cfc50lx85jc4n9a3qmvbdviaj22wr2lghs")))) + "0k8zwa66rm1ncx19ld5mbaxcjxkswiczpdqyssy44vl8k6scwfn9")))) (build-system r-build-system) (propagated-inputs `(("r-callr" ,r-callr) @@ -1328,13 +1327,13 @@ you to rapidly iterate while developing a package.") (define-public r-rcpp (package (name "r-rcpp") - (version "1.0.0") + (version "1.0.1") (source (origin (method url-fetch) (uri (cran-uri "Rcpp" version)) (sha256 - (base32 "1hlbw4k79q9ich4w27b01gsvwrsnrflii8zjlcmgfzm1vpq8ndxp")))) + (base32 "015rmxns8mhmnd9wnz9bmma4iwx2sf4bcwkkp9hcgvdmblzf0vg7")))) (build-system r-build-system) (native-inputs `(("r-knitr" ,r-knitr))) ; for vignettes @@ -1556,14 +1555,14 @@ rows, dropping names) to see if the modified versions are identical.") (define-public r-dendextend (package (name "r-dendextend") - (version "1.9.0") + (version "1.10.0") (source (origin (method url-fetch) (uri (cran-uri "dendextend" version)) (sha256 (base32 - "1jiani6zwfajky2vafvay2hq158nh99rdrk3j00lycspds9v35fd")))) + "091jznl549d44w1h8kk1vwddzhijkyh0wpgkykd494fnc8rzpw48")))) (build-system r-build-system) (propagated-inputs `(("r-fpc" ,r-fpc) @@ -1875,16 +1874,19 @@ provides an interactive R manager and worker environment.") (define-public r-lmoments (package (name "r-lmoments") - (version "1.2-3") + (version "1.3-1") (source (origin (method url-fetch) (uri (cran-uri "Lmoments" version)) (sha256 (base32 - "13p0r4w16jvjnyjmkhkp3dwdfr1gap2l0k4k5jy41m8nc5fvcx79")))) + "0pc63bj9a8hzr5m3yssrc4kin39fffwkl8rggs3sagzr12d4i7bw")))) (properties `((upstream-name . "Lmoments"))) (build-system r-build-system) + (propagated-inputs + `(("r-rcpp" ,r-rcpp) + ("r-rcpparmadillo" ,r-rcpparmadillo))) (home-page "http://www.tilastotiede.fi/juha_karvanen.html") (synopsis "L-moments and quantile mixtures") (description @@ -2702,30 +2704,29 @@ provides a one-row summary of model-level statistics.") (define-public r-recipes (package (name "r-recipes") - (version "0.1.4") + (version "0.1.5") (source (origin (method url-fetch) (uri (cran-uri "recipes" version)) (sha256 (base32 - "0bwijw4427v2k5z3qci2kyr5dyzql8b3lvf88rwy16p741jckjsn")))) + "056zv4vhayyy8q9izcdknbb9hff2gxivg21g5mkssia78vw8g3mg")))) (build-system r-build-system) (propagated-inputs - `(("r-broom" ,r-broom) - ("r-ddalpha" ,r-ddalpha) - ("r-dimred" ,r-dimred) - ("r-dplyr" ,r-dplyr) + `(("r-dplyr" ,r-dplyr) + ("r-generics" ,r-generics) + ("r-glue" ,r-glue) ("r-gower" ,r-gower) ("r-ipred" ,r-ipred) ("r-lubridate" ,r-lubridate) ("r-magrittr" ,r-magrittr) ("r-matrix" ,r-matrix) - ("r-pls" ,r-pls) ("r-purrr" ,r-purrr) ("r-rcpproll" ,r-rcpproll) ("r-rlang" ,r-rlang) ("r-tibble" ,r-tibble) + ("r-tidyr" ,r-tidyr) ("r-tidyselect" ,r-tidyselect) ("r-timedate" ,r-timedate) ("r-withr" ,r-withr))) @@ -2861,14 +2862,14 @@ with the package @code{optim}.") (define-public r-ordinal (package (name "r-ordinal") - (version "2018.8-25") + (version "2019.3-9") (source (origin (method url-fetch) (uri (cran-uri "ordinal" version)) (sha256 (base32 - "03cv9hcrw8j3lhamzhz8sk2p3ns4cw9z41x49h301k2b3pajv43h")))) + "0xsr2715ghh1q5hjnx7d8lyavzfvpi370blm1xdljn3p4kar8ldi")))) (build-system r-build-system) (propagated-inputs `(("r-mass" ,r-mass) @@ -3400,14 +3401,14 @@ plots in @code{ggplot2}.") (define-public r-cli (package (name "r-cli") - (version "1.0.1") + (version "1.1.0") (source (origin (method url-fetch) (uri (cran-uri "cli" version)) (sha256 (base32 - "1r2yih4c0bdmbx0qrarlf0m1p5z30sri755zmdazsq2pw76zp07g")))) + "02hdwvdq5nic6dhxj88jbgsc9m8yrz3yibigg6szkggxyk6hzh2g")))) (build-system r-build-system) (propagated-inputs `(("r-assertthat" ,r-assertthat) @@ -3463,14 +3464,14 @@ constants, and control debugging of packages via environment variables.") (define-public r-processx (package (name "r-processx") - (version "3.2.1") + (version "3.3.0") (source (origin (method url-fetch) (uri (cran-uri "processx" version)) (sha256 (base32 - "1skjyi767avc3safajlj3ikk9lf11zzyjybdcmx8m9y59rf319ql")))) + "0ipdcl4080z92jdnd1w4hm4w484spxcrp6j5x9p76ksb401qdca1")))) (build-system r-build-system) (propagated-inputs `(("r-ps" ,r-ps) @@ -3695,14 +3696,14 @@ terminals.") (define-public r-tinytex (package (name "r-tinytex") - (version "0.10") + (version "0.11") (source (origin (method url-fetch) (uri (cran-uri "tinytex" version)) (sha256 (base32 - "02bz8zaka5j51zin976n5nmk19a0390d0gwgj4zrbh48hl313rqm")))) + "017g0niwmx8qafsn9b01gp60j5fgwxch0dnkmjgpxxr1k4h1r64x")))) (build-system r-build-system) (propagated-inputs `(("r-xfun" ,r-xfun))) @@ -4167,14 +4168,14 @@ sample Robust Rank-Order Distributional Test.") (define-public r-expm (package (name "r-expm") - (version "0.999-3") + (version "0.999-4") (source (origin (method url-fetch) (uri (cran-uri "expm" version)) (sha256 (base32 - "04k4a6g071jkjc0d30ncmf713dj16brcs9m6pj43hnycc1caq6si")))) + "15k0acg2aqb2ajhwal6l7vhhp03m4lg579805d34554cl0kn9l2q")))) (build-system r-build-system) (propagated-inputs `(("r-matrix" ,r-matrix))) (native-inputs `(("gfortran" ,gfortran))) @@ -4884,14 +4885,14 @@ misclassification probabilities of different models.") (define-public r-zip (package (name "r-zip") - (version "2.0.0") + (version "2.0.1") (source (origin (method url-fetch) (uri (cran-uri "zip" version)) (sha256 (base32 - "0a86x6a2cy0lkx98yljk9acb6q3ksz9y5acfaqnmbvnn77pibg86")))) + "0cchbzp2s2qz7r4n9qdwgfgik5xzr0dzxmj25r8435i85k86ysi1")))) (build-system r-build-system) (home-page "https://github.com/gaborcsardi/zip") (synopsis "Cross-platform Zip compression") @@ -5811,27 +5812,51 @@ from the @code{stats} package, as well as numerous other model classes from other add-on packages.") (license license:expat))) +(define-public r-insight + (package + (name "r-insight") + (version "0.1.2") + (source + (origin + (method url-fetch) + (uri (cran-uri "insight" version)) + (sha256 + (base32 + "0cy00j4m9r690hrjdmv8wzwn8mbnkjd3g527nvsmid64h9jgks5f")))) + (build-system r-build-system) + (home-page "https://easystats.github.io/insight/") + (synopsis "Easy access to model information for various model objects") + (description + "This package provides a tool to provide an easy, intuitive and +consistent access to information contained in various R models, like model +formulas, model terms, information about random effects, data that was used to +fit the model or data from response variables. The package mainly revolves +around two types of functions: Functions that find (the names of) information, +starting with @code{find_}, and functions that get the underlying data, +starting with @code{get_}. The package has a consistent syntax and works with +many different model objects, where otherwise functions to access these +information are missing.") + (license license:gpl3))) + (define-public r-sjlabelled (package (name "r-sjlabelled") - (version "1.0.16") + (version "1.0.17") (source (origin (method url-fetch) (uri (cran-uri "sjlabelled" version)) (sha256 (base32 - "1zi1ncna16zl9hcy7mzara4kjxqkgwcw9ncp388ss353wwc9y2nc")))) + "00c0c22ynpihgf2bvmcfnkvqwqvxax2zzb7wldsmg2f7z5a32aa6")))) (build-system r-build-system) (propagated-inputs - `(("r-broom" ,r-broom) - ("r-dplyr" ,r-dplyr) + `(("r-dplyr" ,r-dplyr) ("r-haven" ,r-haven) + ("r-insight" ,r-insight) ("r-magrittr" ,r-magrittr) - ("r-prediction" ,r-prediction) ("r-purrr" ,r-purrr) - ("r-rlang" ,r-rlang) - ("r-snakecase" ,r-snakecase))) + ("r-rlang" ,r-rlang))) (home-page "https://github.com/strengejacke/sjlabelled") (synopsis "Labelled data utility functions") (description @@ -5845,27 +5870,22 @@ vice versa), or to deal with multiple declared missing values.") (define-public r-sjmisc (package (name "r-sjmisc") - (version "2.7.7") + (version "2.7.9") (source (origin (method url-fetch) (uri (cran-uri "sjmisc" version)) (sha256 (base32 - "0xm9pmq17maivmjsygwx3bdjd71hf829qbx735hyxa69z9dhp24q")))) + "11iiap0w5v0dszgwx4pi3j1zf9vnlw1ml1wjvq1hg9iz1plgbfnc")))) (build-system r-build-system) (propagated-inputs - `(("r-broom" ,r-broom) - ("r-crayon" ,r-crayon) - ("r-dplyr" ,r-dplyr) + `(("r-dplyr" ,r-dplyr) ("r-haven" ,r-haven) ("r-magrittr" ,r-magrittr) ("r-purrr" ,r-purrr) ("r-rlang" ,r-rlang) - ("r-sjlabelled" ,r-sjlabelled) - ("r-stringdist" ,r-stringdist) - ("r-stringr" ,r-stringr) - ("r-tidyr" ,r-tidyr))) + ("r-sjlabelled" ,r-sjlabelled))) (home-page "https://github.com/strengejacke/sjmisc") (synopsis "Data and variable transformation functions") (description @@ -6056,14 +6076,14 @@ support for default values, positional argument support, etc.") (define-public r-findpython (package (name "r-findpython") - (version "1.0.4") + (version "1.0.5") (source (origin (method url-fetch) (uri (cran-uri "findpython" version)) (sha256 (base32 - "1zfcdcp4d48d2pzf5n59kqrfk2z9nnyzkx5j00gfmgfkadnv93x5")))) + "0icifm4z6hhpmcjrg75a875iph0ci890ss02kdv3725pijc236iy")))) (build-system r-build-system) (home-page "https://github.com/trevorld/findpython") (synopsis "Functions to find an acceptable Python binary") @@ -6076,19 +6096,18 @@ matches version and feature constraints.") (define-public r-argparse (package (name "r-argparse") - (version "2.0.0") + (version "2.0.1") (source (origin (method url-fetch) (uri (cran-uri "argparse" version)) (sha256 (base32 - "1qrp7hc8sm6ryw0zws76al865ansig1xbx8ljxz4wabh60msrz3i")))) + "1as7h6z7kzgv0fqzpnp76qbm96b4jcd37azd58b7rz0l1n94764l")))) (build-system r-build-system) (inputs `(("python" ,python))) (propagated-inputs `(("r-findpython" ,r-findpython) - ("r-getopt" ,r-getopt) ("r-jsonlite" ,r-jsonlite) ("r-r6" ,r-r6))) (home-page "https://github.com/trevorld/argparse") @@ -6253,19 +6272,18 @@ containing one or more SNPs that evolved under directional selection.") (define-public r-proc (package (name "r-proc") - (version "1.13.0") + (version "1.14.0") (source (origin (method url-fetch) (uri (cran-uri "pROC" version)) (sha256 (base32 - "0ain17clympkx09ym7gydylcd93096dxzqx1qzci310yq2l7fknm")))) + "0ki1pvj5iaki81crapvwqllg5avn5qlvv62axnsdkdcmv9xc3wg0")))) (properties `((upstream-name . "pROC"))) (build-system r-build-system) (propagated-inputs - `(("r-ggplot2" ,r-ggplot2) - ("r-plyr" ,r-plyr) + `(("r-plyr" ,r-plyr) ("r-rcpp" ,r-rcpp))) (home-page "http://expasy.org/tools/pROC/") (synopsis "Display and analyze ROC curves") @@ -7607,20 +7625,42 @@ comparisons of slopes.") Cohen (1988).") (license license:gpl3+))) +(define-public r-libcoin + (package + (name "r-libcoin") + (version "1.0-4") + (source + (origin + (method url-fetch) + (uri (cran-uri "libcoin" version)) + (sha256 + (base32 + "1i893ij9vkmc4y721npw1s3prmmcs2da5vf3ajm0j8ccmfhbmp4i")))) + (build-system r-build-system) + (propagated-inputs `(("r-mvtnorm" ,r-mvtnorm))) + (home-page "https://cran.r-project.org/web/packages/libcoin") + (synopsis "Linear test statistics for permutation inference") + (description + "This package provides basic infrastructure for linear test statistics +and permutation inference in the framework of Strasser and Weber (1999).") + (license license:gpl2))) + (define-public r-coin (package (name "r-coin") - (version "1.2-2") + (version "1.3-0") (source (origin (method url-fetch) (uri (cran-uri "coin" version)) (sha256 (base32 - "1fq58793bymzig1syjg2lvn6hsxfwkhh00jfrchh3c0y7rfhc66m")))) + "1y0yl4mjaxca0jqz53sv1gcpdg89m099rq61iszxvpx7w0vvpkmd")))) (build-system r-build-system) (propagated-inputs - `(("r-modeltools" ,r-modeltools) + `(("r-libcoin" ,r-libcoin) + ("r-matrixstats" ,r-matrixstats) + ("r-modeltools" ,r-modeltools) ("r-multcomp" ,r-multcomp) ("r-mvtnorm" ,r-mvtnorm) ("r-survival" ,r-survival))) @@ -7694,31 +7734,26 @@ detection, parallelism through BLAS and parallel user templates.") (define-public r-sjstats (package (name "r-sjstats") - (version "0.17.3") + (version "0.17.4") (source (origin (method url-fetch) (uri (cran-uri "sjstats" version)) (sha256 (base32 - "02na2pzxp88yp52h7vs959fgydiddmns39m9x4i0vz8fp016bdf8")))) + "012hp9m17xzjnsfvjjz2wdfgxm3irsrfx0zmahfnfmgdrwxd5vk5")))) (build-system r-build-system) (propagated-inputs - `(("r-bayesplot" ,r-bayesplot) - ("r-broom" ,r-broom) - ("r-coin" ,r-coin) - ("r-crayon" ,r-crayon) + `(("r-broom" ,r-broom) ("r-dplyr" ,r-dplyr) ("r-emmeans" ,r-emmeans) - ("r-glmmtmb" ,r-glmmtmb) + ("r-insight" ,r-insight) ("r-lme4" ,r-lme4) ("r-magrittr" ,r-magrittr) ("r-mass" ,r-mass) ("r-matrix" ,r-matrix) ("r-modelr" ,r-modelr) - ("r-nlme" ,r-nlme) ("r-purrr" ,r-purrr) - ("r-pwr" ,r-pwr) ("r-rlang" ,r-rlang) ("r-sjlabelled" ,r-sjlabelled) ("r-sjmisc" ,r-sjmisc) @@ -7772,30 +7807,25 @@ differentiation.") (define-public r-ggeffects (package (name "r-ggeffects") - (version "0.8.0") + (version "0.9.0") (source (origin (method url-fetch) (uri (cran-uri "ggeffects" version)) (sha256 (base32 - "152xyadj5m171z7dlzzy40y1fp2l9v46525dlw2al3qr0b7zpm61")))) + "1bbr44yk1j8pz4kcbw1cqrzcnbih9n6rsgf96a6py5094qcal2qd")))) (build-system r-build-system) (propagated-inputs - `(("r-crayon" ,r-crayon) - ("r-dplyr" ,r-dplyr) - ("r-ggplot2" ,r-ggplot2) - ("r-lme4" ,r-lme4) + `(("r-dplyr" ,r-dplyr) + ("r-insight" ,r-insight) ("r-magrittr" ,r-magrittr) ("r-mass" ,r-mass) - ("r-prediction" ,r-prediction) ("r-purrr" ,r-purrr) ("r-rlang" ,r-rlang) ("r-scales" ,r-scales) ("r-sjlabelled" ,r-sjlabelled) - ("r-sjmisc" ,r-sjmisc) - ("r-sjstats" ,r-sjstats) - ("r-tidyr" ,r-tidyr))) + ("r-sjmisc" ,r-sjmisc))) (home-page "https://github.com/strengejacke/ggeffects") (synopsis "Create tidy data frames of marginal effects for ggplot") (description @@ -7901,14 +7931,14 @@ back to file after modifications.") (define-public r-fs (package (name "r-fs") - (version "1.2.6") + (version "1.2.7") (source (origin (method url-fetch) (uri (cran-uri "fs" version)) (sha256 (base32 - "0kqqaqqml8x3r1mdld40iwns0ylj2f52qsdh1vcn39f7w7c2ka8j")))) + "03aq2ill03ladsa4438nrz213ks2mqhxsrb9fjsp62bhk36v8k1a")))) (build-system r-build-system) (propagated-inputs `(("r-rcpp" ,r-rcpp))) @@ -8445,14 +8475,14 @@ This package provides an R interface.") (define-public r-ncdf4 (package (name "r-ncdf4") - (version "1.16") + (version "1.16.1") (source (origin (method url-fetch) (uri (cran-uri "ncdf4" version)) (sha256 (base32 - "0lwjjis0b83c4l3xvqai4ckzrskd6mychck1iwxcxgjvh0d77mgd")))) + "083sb24anyd4sw0il3x07pqn9rbx5y5ayqass6mz8x443rnjvphd")))) (build-system r-build-system) (inputs `(("netcdf" ,netcdf) @@ -8492,14 +8522,14 @@ Bioconductor packages.") (define-public r-rgl (package (name "r-rgl") - (version "0.99.16") + (version "0.100.19") (source (origin (method url-fetch) (uri (cran-uri "rgl" version)) (sha256 (base32 - "0q8sg8fr0140ilssqhscaxkjc29w1rpp6f4k50amw3zzs9g58ak9")))) + "09bhvx8aq104yzysfgd7wlnq4vrvmnd4jzgj0c32whjfal10fqsh")))) (build-system r-build-system) (native-inputs `(("pkg-config" ,pkg-config))) @@ -8770,14 +8800,14 @@ parametrizations of Nolan.") (define-public r-gsl (package (name "r-gsl") - (version "1.9-10.3") + (version "2.1-5") (source (origin (method url-fetch) (uri (cran-uri "gsl" version)) (sha256 (base32 - "00isw2iha5af4s7rr8svqka9mkl9l26l8h2rnk4r7fkhh7fc97sg")))) + "18kzgwmyfqg570gn2b33fm6mj87fiaa4a3bx954yrj8iq28im71v")))) (build-system r-build-system) (inputs `(("gsl" ,gsl))) @@ -9707,14 +9737,14 @@ and manipulating sets of ontological terms.") (define-public r-gmp (package (name "r-gmp") - (version "0.5-13.4") + (version "0.5-13.5") (source (origin (method url-fetch) (uri (cran-uri "gmp" version)) (sha256 (base32 - "15jifzwbzqcnq2apzvsylkx4k9lillkgblm4wf4wb7y31ys0amph")))) + "042mzsl6z6s61fy5m21yf9q83l08vnyqljn4iax7kqyiycpsp0gn")))) (build-system r-build-system) (arguments '(#:phases @@ -10198,14 +10228,14 @@ This makes it a convenient and fast interface to C/C++ and Fortran code.") (define-public r-spam (package (name "r-spam") - (version "2.2-1") + (version "2.2-2") (source (origin (method url-fetch) (uri (cran-uri "spam" version)) (sha256 (base32 - "04bfwwna013hrbl4k6w1cdiz5bkc83jlasivriyn5l9gkj2qskr2")))) + "024dgfnjfxvsiymbzrhadinamj6qy509f4sbd1zxql8ymkyxn7vi")))) (build-system r-build-system) (propagated-inputs `(("r-dotcall64" ,r-dotcall64))) @@ -10583,14 +10613,14 @@ regression coefficients can be conducted via jackknifing.") (define-public r-huge (package (name "r-huge") - (version "1.3.0") + (version "1.3.1") (source (origin (method url-fetch) (uri (cran-uri "huge" version)) (sha256 (base32 - "18psr7arynax38hcc5y9dxskhsg4a5zjw3hjbgf96zy59wdib5ch")))) + "06s22i2cdn6g2r8kq5csyspinayh8dxxg9gkwcf4sa1lmrgb0bf9")))) (build-system r-build-system) (propagated-inputs `(("r-igraph" ,r-igraph) @@ -10636,14 +10666,14 @@ lasso, adaptive lasso and Ridge regression based on cross-validation.") (define-public r-mcmc (package (name "r-mcmc") - (version "0.9-5") + (version "0.9-6") (source (origin (method url-fetch) (uri (cran-uri "mcmc" version)) (sha256 (base32 - "1i3rahph8pbhi5dsyjnkazqklg4lhh3azlyvx4kvabx50q0awxn6")))) + "1fc6a6asn53lx7x7pnlb5mb716nv4pcmbp99f1i30y4hzygihfj4")))) (build-system r-build-system) (home-page "http://www.stat.umn.edu/geyer/mcmc/") (synopsis "Markov chain Monte Carlo") @@ -10707,14 +10737,14 @@ them in distributed compute environments.") (define-public r-future (package (name "r-future") - (version "1.11.1.1") + (version "1.12.0") (source (origin (method url-fetch) (uri (cran-uri "future" version)) (sha256 (base32 - "1s4lyqg4mm1drzc6czaalmhmxfjgp4nznb14ql5xzny9rprgz43i")))) + "12hq7hsfydlscwrb37ns9a8561bzpsp82nn7jrcyj0ydk610nipm")))) (build-system r-build-system) (propagated-inputs `(("r-digest" ,r-digest) @@ -11129,14 +11159,14 @@ such software by imputing dropout events.") (define-public r-gamlss-dist (package (name "r-gamlss-dist") - (version "5.1-1") + (version "5.1-3") (source (origin (method url-fetch) (uri (cran-uri "gamlss.dist" version)) (sha256 (base32 - "1cd0vl9klcb849i8xwyjm8ihb1da92631j1rxdbnflgffkzrkya4")))) + "0154pm1f3g77krj0gxh9icz207pshdrxihb6gjv1k5aph8y69zc7")))) (properties `((upstream-name . "gamlss.dist"))) (build-system r-build-system) (propagated-inputs `(("r-mass" ,r-mass))) @@ -11338,18 +11368,17 @@ them (Anscombe-Glynn, D'Agostino, Bonett-Seier).") (define-public r-msir (package (name "r-msir") - (version "1.3.1") + (version "1.3.2") (source (origin (method url-fetch) (uri (cran-uri "msir" version)) (sha256 (base32 - "1ipzgdffsqly3dp91pw7yp3h5cwn08l9qsj7cdmrykd42jc98950")))) + "0pvc3q162vqq3k39nni732x05zzfz4y9y2zf56d83185ypszv9kb")))) (build-system r-build-system) (propagated-inputs - `(("r-mclust" ,r-mclust) - ("r-rgl" ,r-rgl))) + `(("r-mclust" ,r-mclust))) (home-page "https://cran.r-project.org/web/packages/msir") (synopsis "Model-based sliced inverse regression") (description @@ -11739,3 +11768,58 @@ R, enabling interactive analysis and visualization of genome-scale data.") "This package provides wrappers on @code{regexpr} and @code{gregexpr} to return the match results in tidy data frames.") (license license:expat))) + +(define-public r-picante + (package + (name "r-picante") + (version "1.8") + (source + (origin + (method url-fetch) + (uri (cran-uri "picante" version)) + (sha256 + (base32 + "1bcq2j7fs89c2jib68qq6la67rxyg9raryf162mwvjakpf6k19l1")))) + (build-system r-build-system) + (propagated-inputs + `(("r-ape" ,r-ape) + ("r-nlme" ,r-nlme) + ("r-vegan" ,r-vegan))) + (home-page "https://cran.r-project.org/web/packages/picante/") + (synopsis "Integrating phylogenies and ecology") + (description + "This package provides functions for phylocom integration, community +analyses, null-models, traits and evolution. It implements numerous +ecophylogenetic approaches including measures of community phylogenetic and +trait diversity, phylogenetic signal, estimation of trait values for +unobserved taxa, null models for community and phylogeny randomizations, and +utility functions for data input/output and phylogeny plotting. A full +description of package functionality and methods are provided by Kembel et +al. (2010).") + (license license:gpl2))) + +(define-public r-reinforcelearn + (package + (name "r-reinforcelearn") + (version "0.2.0") + (source + (origin + (method url-fetch) + (uri (cran-uri "reinforcelearn" version)) + (sha256 + (base32 + "0naakmyb14d2cf7cy5ir52qh3bp51gvs6hyhfi3f72yl2jfnnpzg")))) + (build-system r-build-system) + (propagated-inputs + `(("r-checkmate" ,r-checkmate) + ("r-nnet" ,r-nnet) + ("r-purrr" ,r-purrr) + ("r-r6" ,r-r6))) + (home-page "https://markusdumke.github.io/reinforcelearn") + (synopsis "Reinforcement learning") + (description + "This package implements reinforcement learning environments and +algorithms as described in Sutton & Barto (1998). The Q-Learning algorithm +can be used with function approximation, eligibility traces (Singh & Sutton, +1996) and experience replay (Mnih et al., 2013).") + (license license:expat))) |