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Diffstat (limited to 'gnu/packages/cran.scm')
| -rw-r--r-- | gnu/packages/cran.scm | 38 |
1 files changed, 38 insertions, 0 deletions
diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index 00ea096bbd..94966e8d41 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -5286,6 +5286,44 @@ Friendly and is now the main support package for a new book, \"Discrete Data Analysis with R\" by Michael Friendly and David Meyer (2015).") (license license:gpl2))) +(define-public r-vcfr + (package + (name "r-vcfr") + (version "1.12.0") + (source (origin + (method url-fetch) + (uri (cran-uri "vcfR" version)) + (sha256 + (base32 + "0lhxb3ac4fafwik9q3cds46svzf0hyca8k54chw3dpk50c0zz1yx")))) + (build-system r-build-system) + (native-inputs + `(("r-knitr" ,r-knitr))) + (inputs + `(("zlib" ,zlib))) + (propagated-inputs + `(("r-ape" ,r-ape) + ("r-dplyr" ,r-dplyr) + ("r-magrittr" ,r-magrittr) + ("r-memuse" ,r-memuse) + ("r-pinfsc50" ,r-pinfsc50) + ("r-rcpp" ,r-rcpp) + ("r-stringr" ,r-stringr) + ("r-tibble" ,r-tibble) + ("r-vegan" ,r-vegan) + ("r-viridislite" ,r-viridislite))) + (home-page "https://github.com/knausb/vcfR") + (synopsis "Manipulate and visualize VCF data") + (description "This package facilitates easy manipulation of variant call +format (VCF) data. Functions are provided to rapidly read from and write to +VCF files. Once VCF data is read into R, a parser function extracts matrices +of data. This information can then be used for quality control or other +purposes. Additional functions provide visualization of genomic data. Once +processing is complete data may be written to a VCF file. It also may be +converted into other popular R objects. This package provides a link between +VCF data and familiar R software.") + (license license:gpl3))) + (define-public r-ica (package (name "r-ica") |