diff options
Diffstat (limited to 'gnu/packages/cran.scm')
| -rw-r--r-- | gnu/packages/cran.scm | 1499 |
1 files changed, 1374 insertions, 125 deletions
diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index 872d8d6f1a..0750c7d507 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -134,14 +134,14 @@ files and provide more explicit control over line endings.") (define-public r-cachem (package (name "r-cachem") - (version "1.0.5") + (version "1.0.6") (source (origin (method url-fetch) (uri (cran-uri "cachem" version)) (sha256 (base32 - "1xigqfhkl4n768bjgn2bqvb9k70h1ibj4lv5vvpwsh1p6vw4mkw2")))) + "0r0q5w8lsxak46crnkbi739qzys90hlw7cqqqhv99xzkpkvm554s")))) (properties `((upstream-name . "cachem"))) (build-system r-build-system) (propagated-inputs @@ -187,18 +187,20 @@ etc.") (define-public r-datawizard (package (name "r-datawizard") - (version "0.1.0") + (version "0.2.0") (source (origin (method url-fetch) (uri (cran-uri "datawizard" version)) (sha256 (base32 - "1fc27arvm6ks65kl9nrl2vnprpz7j8d0r2yassgxnnvr3p3ba043")))) + "1brbkjl0ds3gd0x6jl6vggzl1nfrn76z63vhj2gbl9l168iss5z3")))) (properties `((upstream-name . "datawizard"))) (build-system r-build-system) (propagated-inputs `(("r-insight" ,r-insight))) + (native-inputs + `(("r-knitr" ,r-knitr))) (home-page "https://easystats.github.io/datawizard/") (synopsis "Easy data wrangling") (description @@ -229,6 +231,26 @@ wrangling backend for the packages in the @code{easystats} ecosystem.") visualization of their differences.") (license license:gpl2+))) +(define-public r-emdist + (package + (name "r-emdist") + (version "0.3-1") + (source + (origin + (method url-fetch) + (uri (cran-uri "emdist" version)) + (sha256 + (base32 + "1z14pb9z9nkd0f2c8pln4hzkfqa9dk9n3vg8czc8jiv0ndnqi7rq")))) + (properties `((upstream-name . "emdist"))) + (build-system r-build-system) + (home-page "http://www.rforge.net/emd") + (synopsis "Earth mover's distance") + (description + "This package provides tools to calculate the Earth Mover's +Distance (EMD).") + (license license:expat))) + (define-public r-googledrive (package (name "r-googledrive") @@ -638,13 +660,13 @@ variables.") (define-public r-ggpmisc (package (name "r-ggpmisc") - (version "0.4.2") + (version "0.4.2-1") (source (origin (method url-fetch) (uri (cran-uri "ggpmisc" version)) (sha256 (base32 - "0ma0xcwjgj0sp9483s2y62ylv992dqjxqfgb3zl8f1pksypqdbac")))) + "1jkxcmpxq3b5ng276adph25s5w9imjxr1lqasqw50d2kcdhq58cy")))) (build-system r-build-system) (propagated-inputs `(("r-dplyr" ,r-dplyr) @@ -1195,14 +1217,14 @@ package is a port of the Python package @code{cssselect}.") (define-public r-reprex (package (name "r-reprex") - (version "2.0.0") + (version "2.0.1") (source (origin (method url-fetch) (uri (cran-uri "reprex" version)) (sha256 (base32 - "1lcnxczy28n4g3rvph09va7svcznfyqa7zdggklqb924qvy7flwh")))) + "09k4rasp7mz6n796dsklcbc5l7prljiznrm7fra16qybr9kqcv8f")))) (build-system r-build-system) (propagated-inputs `(("r-callr" ,r-callr) @@ -1424,23 +1446,21 @@ Zucchini.") (define-public r-httpuv (package (name "r-httpuv") - (version "1.6.1") + (version "1.6.2") (source (origin (method url-fetch) (uri (cran-uri "httpuv" version)) (sha256 (base32 - "0rxy57zl8yb5amsn3pvikha04k2vk0py4gys09lc7wr3agamswva")) + "1p5savhrcqlagnnh8ccnhpypbif9jhp97nq4rnhldn98gmb4a7sn")) ;; Unvendor bundled libraries. As of 1.5.4 the vendored libuv ;; only contains fixes for building on Solaris. (patches (search-patches "r-httpuv-1.5.5-unvendor-libuv.patch")) (modules '((guix build utils))) + ;; Cannot unbundle http-parser, because it contains local + ;; modifications. (snippet - `(begin - (delete-file-recursively "src/libuv") - ;; Cannot unbundle http-parser, because it contains local - ;; modifications. - #t)))) + '(delete-file-recursively "src/libuv")))) (build-system r-build-system) (arguments `(#:phases @@ -1453,10 +1473,10 @@ Zucchini.") ;; Fix https://github.com/rstudio/httpuv/issues/282 (substitute* "src/http.cpp" (("uv_pipe_init\\(pLoop, &pSocket->handle\\.pipe, true\\);") - "uv_pipe_init(pLoop, &pSocket->handle.pipe, 0);")) - #t))))) + "uv_pipe_init(pLoop, &pSocket->handle.pipe, 0);"))))))) (inputs - `(("libuv" ,libuv))) + `(("libuv" ,libuv) + ("zlib" ,zlib))) (propagated-inputs `(("r-later" ,r-later) ("r-promises" ,r-promises) @@ -1503,13 +1523,13 @@ in systems and applications.") (define-public r-servr (package (name "r-servr") - (version "0.22") + (version "0.23") (source (origin (method url-fetch) (uri (cran-uri "servr" version)) (sha256 (base32 - "1vnlkbf8s55rfgz7qp2dd84pf9zw94qmdx25rl6i7jybhsxmb71h")))) + "1f1fgfgjgjsbn2krkbyw2qwkm0k4lq9p9jakg9zwyqlgpkdd34j4")))) (build-system r-build-system) (propagated-inputs `(("r-httpuv" ,r-httpuv) @@ -2261,14 +2281,14 @@ Bootstrap themes, which are packaged for use with Shiny applications.") (define-public r-d3r (package (name "r-d3r") - (version "0.9.1") + (version "1.0.0") (source (origin (method url-fetch) (uri (cran-uri "d3r" version)) (sha256 (base32 - "0kc82vvyfxhxvqfalngn36prn3sxdiinsx04rn99ha6zdc27zp5k")))) + "1qijkllfaaw0lb29j8mappm8jz9kg8gkihxq5wqhb4gabsazdwva")))) (build-system r-build-system) (arguments `(#:modules ((guix build utils) @@ -2289,7 +2309,9 @@ Bootstrap themes, which are packaged for use with Shiny applications.") (,(assoc-ref inputs "d3.v5.js") "v5/dist/d3.min.js") (,(assoc-ref inputs "d3.v6.js") - "v6/dist/d3.min.js")))) + "v6/dist/d3.min.js") + (,(assoc-ref inputs "d3.v7.js") + "v7/dist/d3.min.js")))) (lambda (sources targets) (for-each (lambda (source target) (format #t "Processing ~a --> ~a~%" @@ -2297,8 +2319,7 @@ Bootstrap themes, which are packaged for use with Shiny applications.") (delete-file target) (invoke "esbuild" source "--minify" (string-append "--outfile=" target))) - sources targets)))) - #t))))) + sources targets))))))))) (propagated-inputs `(("r-dplyr" ,r-dplyr) ("r-htmltools" ,r-htmltools) @@ -2333,7 +2354,14 @@ Bootstrap themes, which are packaged for use with Shiny applications.") (uri "https://d3js.org/d3.v6.js") (sha256 (base32 - "1x6432ca7p1pfxhz3airzw943fincn9izzxkclc1wmphcvv2n2p9")))))) + "1x6432ca7p1pfxhz3airzw943fincn9izzxkclc1wmphcvv2n2p9")))) + ("d3.v7.js" + ,(origin + (method url-fetch) + (uri "https://d3js.org/d3.v7.js") + (sha256 + (base32 + "0sd6vavxs8mx5xyb8xahlqghdiczqd284a7d5wravhqnrj0bw097")))))) (home-page "https://github.com/timelyportfolio/d3r") (synopsis "d3.js utilities for R") (description @@ -4029,14 +4057,14 @@ matrices, a special case of sparse matrices.") (define-public r-bbmle (package (name "r-bbmle") - (version "1.0.23.1") + (version "1.0.24") (source (origin (method url-fetch) (uri (cran-uri "bbmle" version)) (sha256 (base32 - "0p3l9shbr2846qmw8n0fyzf4j7gmi08aypl82jml3dwh26q1whk0")))) + "1bck8rmink4wsk8pcbnj4d60svxymp29pxbzwj8p9gzsg42c1v81")))) (build-system r-build-system) (propagated-inputs `(("r-bdsmatrix" ,r-bdsmatrix) @@ -4045,6 +4073,8 @@ matrices, a special case of sparse matrices.") ("r-matrix" ,r-matrix) ("r-mvtnorm" ,r-mvtnorm) ("r-numderiv" ,r-numderiv))) + (native-inputs + `(("r-knitr" ,r-knitr))) (home-page "https://cran.r-project.org/web/packages/bbmle") (synopsis "Tools for General Maximum Likelihood Estimation") (description @@ -5737,13 +5767,13 @@ iVAT).") (define-public r-xfun (package (name "r-xfun") - (version "0.24") + (version "0.25") (source (origin (method url-fetch) (uri (cran-uri "xfun" version)) (sha256 - (base32 "10xmw82wk40kjx22slla7959993l80s9m2rsvvvb8v9g42armqz3")))) + (base32 "15xy6hpz35j3mn4gvllj5m6krh5d86l4rnlxazsqjlckr237qgg6")))) (build-system r-build-system) ;; knitr itself depends on xfun #; @@ -5910,14 +5940,14 @@ packages that work with genomic data.") (define-public r-tinytex (package (name "r-tinytex") - (version "0.32") + (version "0.33") (source (origin (method url-fetch) (uri (cran-uri "tinytex" version)) (sha256 (base32 - "17y20kb5xgmz77n4rrkqmcm0cnjwfi4mn84h6zabij76b8cjiykh")))) + "10lqn704dqv5k5v6y964l8c77rwy4ilrc1hcb99j4vxpx3p4nd43")))) (build-system r-build-system) (propagated-inputs `(("r-xfun" ,r-xfun))) @@ -7437,14 +7467,14 @@ exchanging spatial objects with other R packages.") (define-public r-later (package (name "r-later") - (version "1.2.0") + (version "1.3.0") (source (origin (method url-fetch) (uri (cran-uri "later" version)) (sha256 (base32 - "00f4n1b2ykrs2cd61pypa4d00ydx9hqq2c1a1p8psa2yym6979bm")))) + "0acqg29hcm2iq1418b54np7zb5pnr3xzrwc3ijv2pz9wra10ix88")))) (build-system r-build-system) (propagated-inputs `(("r-rcpp" ,r-rcpp) @@ -7562,22 +7592,20 @@ it.") (define-public r-rgexf (package (name "r-rgexf") - (version "0.16.0") + (version "0.16.2") (source (origin (method url-fetch) (uri (cran-uri "rgexf" version)) (sha256 (base32 - "1vj5ha1qx0xzflchxf25ycys6clfn9y32m1717afzkvhmkwisrra")) + "00c2zka1n3k7p1l0mlchr063s6x58p9r3fb64d4wgl4rvsq55q3f")) + ;; Delete minified JavaScript files (snippet - '(begin - ;; Delete minified JavaScript files - (for-each delete-file - '("inst/gexf-js/js/jquery-2.0.2.min.js" - "inst/gexf-js/js/jquery-ui-1.10.3.custom.min.js" - "inst/gexf-js/js/jquery.mousewheel.min.js")) - #true)))) + '(for-each delete-file + '("inst/gexf-js/js/jquery-2.0.2.min.js" + "inst/gexf-js/js/jquery-ui-1.10.3.custom.min.js" + "inst/gexf-js/js/jquery.mousewheel.min.js"))))) (properties `((upstream-name . "rgexf"))) (build-system r-build-system) (arguments @@ -7606,8 +7634,7 @@ it.") source target) (invoke "esbuild" source "--minify" (string-append "--outfile=" target))) - sources targets)))) - #t))))) + sources targets))))))))) (propagated-inputs `(("r-igraph" ,r-igraph) ("r-servr" ,r-servr) @@ -8419,14 +8446,14 @@ hierarchical models using Markov Chain Monte Carlo (MCMC) simulation.") (define-public r-rbibutils (package (name "r-rbibutils") - (version "2.2.2") + (version "2.2.3") (source (origin (method url-fetch) (uri (cran-uri "rbibutils" version)) (sha256 (base32 - "0ks43z6vvdz0d0jv5d2qrm12yb4cwvi7p3kjk6byi4farhh368di")))) + "1rzc2icik26qlnrbq58c24lc9m0grl83p0hyr70whallqfipa174")))) (properties `((upstream-name . "rbibutils"))) (build-system r-build-system) (home-page "https://geobosh.github.io/rbibutils/") @@ -8693,14 +8720,14 @@ other add-on packages.") (define-public r-insight (package (name "r-insight") - (version "0.14.2") + (version "0.14.3") (source (origin (method url-fetch) (uri (cran-uri "insight" version)) (sha256 (base32 - "0dy7m6fb9ciyskxjirk6k4blfj9k3n4zfyx677xm3cmscp61g8gp")))) + "1fynidv11wmh51ybwzqj3c206slfwdz8a53qr57lcxwrg7zjn94q")))) (build-system r-build-system) (native-inputs `(("r-knitr" ,r-knitr))) @@ -8981,14 +9008,14 @@ matches version and feature constraints.") (define-public r-argparse (package (name "r-argparse") - (version "2.0.3") + (version "2.0.4") (source (origin (method url-fetch) (uri (cran-uri "argparse" version)) (sha256 (base32 - "1c2r417m1dxk1jhcggv3g4zax5a59k9rqs9jcs6xy2pa2333jqfj")))) + "1sgrr6acvfjbhksj45v6d5m5n5pp12kypcxisgbshlr9jdkmasd7")))) (build-system r-build-system) (inputs `(("python" ,python))) (propagated-inputs @@ -10199,14 +10226,14 @@ samples is large and the number of mixture components is not too large.") (define-public r-magick (package (name "r-magick") - (version "2.7.2") + (version "2.7.3") (source (origin (method url-fetch) (uri (cran-uri "magick" version)) (sha256 (base32 - "1ckp85wk9lj6jjm92ww4mg1r4h4zm2cm68y6fyb1hz4mr3nihmji")))) + "0h942bn7wfnzbbgq9hrs75c7igmg5r1c5sad2v0znhza4cp7p1w3")))) (build-system r-build-system) (inputs `(("imagemagick" ,imagemagick) @@ -10641,14 +10668,14 @@ Hothorn, Westfall, 2010, CRC Press).") (define-public r-emmeans (package (name "r-emmeans") - (version "1.6.2-1") + (version "1.6.3") (source (origin (method url-fetch) (uri (cran-uri "emmeans" version)) (sha256 (base32 - "04971fi02x4ajkx1mijdv283wb5acic0s1s8g68vv7vk2bk09rj4")))) + "1mwcq3hvpx04qnn5k0bv1mikjgm9mk6m83i8hj350s1c1a0mi40n")))) (build-system r-build-system) (propagated-inputs `(("r-estimability" ,r-estimability) @@ -11193,14 +11220,14 @@ user credentials.") (define-public r-gert (package (name "r-gert") - (version "1.3.1") + (version "1.3.2") (source (origin (method url-fetch) (uri (cran-uri "gert" version)) (sha256 (base32 - "0ydakqhwi406pn255zgrzw31x01djrrjdaknh0d2ibw136lmw5hj")))) + "0pqrv58hqbf6cifwi9zxgnkql6a2j9i8wknnd5ng8z3d94zs12bz")))) (properties `((upstream-name . "gert"))) (build-system r-build-system) (inputs @@ -11684,6 +11711,40 @@ using @dfn{penalized quasi-likelihood} (PQL) estimation (see Jaeger et al. (2016)).") (license license:gpl2))) +(define-public r-cmdfun + (package + (name "r-cmdfun") + (version "1.0.2") + (source + (origin + (method url-fetch) + (uri (cran-uri "cmdfun" version)) + (sha256 + (base32 + "1pbcq7hi2lcmqnghmy3q2fsk0c9fy5m0637acyzmc096fxbx723j")))) + (properties `((upstream-name . "cmdfun"))) + (build-system r-build-system) + (propagated-inputs + `(("r-magrittr" ,r-magrittr) + ("r-purrr" ,r-purrr) + ("r-r-utils" ,r-r-utils) + ("r-rlang" ,r-rlang) + ("r-testthat" ,r-testthat) + ("r-usethis" ,r-usethis))) + (native-inputs + `(("r-knitr" ,r-knitr))) + (home-page "https://snystrom.github.io/cmdfun/") + (synopsis "Framework for building interfaces to shell commands") + (description + "Writing interfaces to command line software is cumbersome. The cmdfun +package provides a framework for building function calls to seamlessly +interface with shell commands by allowing lazy evaluation of command line +arguments. It also provides methods for handling user-specific paths to tool +installs or secrets like API keys. Its focus is to equally serve package +builders who wish to wrap command line software, and to help analysts stay +inside R when they might usually leave to execute non-R software.") + (license license:expat))) + (define-public r-weights (package (name "r-weights") @@ -11833,14 +11894,14 @@ Bioconductor packages.") (define-public r-rgl (package (name "r-rgl") - (version "0.107.10") + (version "0.107.14") (source (origin (method url-fetch) (uri (cran-uri "rgl" version)) (sha256 (base32 - "0ikqk30bpaak26f230rxi3l6fq5ym1558ngni86zs3nd42gqm3mi")))) + "1z5h4wbjj18prcykc96rqcn699pnqw6vybwj2mpbbbdw2lr3q8b7")))) (build-system r-build-system) (native-inputs `(("pkg-config" ,pkg-config) @@ -13270,14 +13331,14 @@ preparing, executing, and processing HTTP requests.") (define-public r-bigrquery (package (name "r-bigrquery") - (version "1.3.2") + (version "1.4.0") (source (origin (method url-fetch) (uri (cran-uri "bigrquery" version)) (sha256 (base32 - "16whccv7f94vf57dvbbrhdskz3nnbmpa11a14kp7aynckldlfy0v")))) + "02msq61l7vamzpvbhvalh3qil1aa7pr68pwpsivbb6pvz6p4zyns")))) (build-system r-build-system) (propagated-inputs `(("r-assertthat" ,r-assertthat) @@ -13288,6 +13349,7 @@ preparing, executing, and processing HTTP requests.") ("r-glue" ,r-glue) ("r-httr" ,r-httr) ("r-jsonlite" ,r-jsonlite) + ("r-lifecycle" ,r-lifecycle) ("r-prettyunits" ,r-prettyunits) ("r-progress" ,r-progress) ("r-rapidjsonr" ,r-rapidjsonr) @@ -14394,14 +14456,14 @@ the local machine to, say, distributed processing on a remote compute cluster.") (define-public r-future-apply (package (name "r-future-apply") - (version "1.7.0") + (version "1.8.1") (source (origin (method url-fetch) (uri (cran-uri "future.apply" version)) (sha256 (base32 - "1ns5cf80vyabvyz9qp6kpvkg4jycinn7x6v7x6692fgjapdnmyig")))) + "1ix61bfbk43pwnjb0wk8lkfgdsy5zi8svk74gar5nrl90b5w6nqd")))) (properties `((upstream-name . "future.apply"))) (build-system r-build-system) (arguments @@ -16503,16 +16565,17 @@ SELECT or UPDATE queries to an end-point.") (define-public r-bookdown (package (name "r-bookdown") - (version "0.22") + (version "0.23") (source (origin (method url-fetch) (uri (cran-uri "bookdown" version)) (sha256 (base32 - "0j80wm36mw3f14ncfwm6xx09wff1kswfiv8b309x9y0f9r46dr0z")))) + "1q0n3pjhgpsin4z7bdf0hixkfxvbbn1wc23040yl11wzc5x2f1ap")))) (build-system r-build-system) (propagated-inputs `(("r-htmltools" ,r-htmltools) + ("r-jquerylib" ,r-jquerylib) ("r-knitr" ,r-knitr) ("r-rmarkdown" ,r-rmarkdown) ("r-tinytex" ,r-tinytex) @@ -16979,22 +17042,42 @@ improvements over the @code{convertColor} function in the @code{grDevices} package.") (license license:expat))) +(define-public r-yulab-utils + (package + (name "r-yulab-utils") + (version "0.0.2") + (source + (origin + (method url-fetch) + (uri (cran-uri "yulab.utils" version)) + (sha256 + (base32 + "1haq6k0r64gs76p2vvrm42m64r8s32kzyz573pw9789y32zn0s5q")))) + (properties `((upstream-name . "yulab.utils"))) + (build-system r-build-system) + (home-page "https://cran.r-project.org/package=yulab.utils") + (synopsis "Supporting functions for packages maintained by YuLab-SMU") + (description + "Miscellaneous functions commonly used by YuLab-SMU, such as +@code{install_zip_gh} to install R packages from Github ZIP files.") + (license license:artistic2.0))) + (define-public r-ggplotify (package (name "r-ggplotify") - (version "0.0.8") + (version "0.0.9") (source (origin (method url-fetch) (uri (cran-uri "ggplotify" version)) (sha256 (base32 - "08c9vxm8pg6l5g3r7wsfgzsq00xdrc6v4xnn7pd3qcyw7cc8s969")))) + "1irm8pmf20bfl2djr591jfs7g8l7vw2673ri76pimz3285l74bp0")))) (build-system r-build-system) (propagated-inputs `(("r-ggplot2" ,r-ggplot2) ("r-gridgraphics" ,r-gridgraphics) - ("r-rvcheck" ,r-rvcheck))) + ("r-yulab-utils" ,r-yulab-utils))) (native-inputs `(("r-knitr" ,r-knitr))) (home-page "https://github.com/GuangchuangYu/ggplotify") @@ -17532,6 +17615,31 @@ matrix and displays the significance level on the plot. It also includes a function for computing a matrix of correlation p-values.") (license license:gpl2))) +(define-public r-ggfun + (package + (name "r-ggfun") + (version "0.0.3") + (source + (origin + (method url-fetch) + (uri (cran-uri "ggfun" version)) + (sha256 + (base32 + "0bf8pl3scy5fx15h1fx0799cb9sg9spjapqif9gcz27pmmgdc0n9")))) + (properties `((upstream-name . "ggfun"))) + (build-system r-build-system) + (propagated-inputs + `(("r-ggplot2" ,r-ggplot2) + ("r-rlang" ,r-rlang))) + (native-inputs `(("r-knitr" ,r-knitr))) + (home-page "https://cran.r-project.org/package=ggfun") + (synopsis "Miscellaneous functions for ggplot2") + (description + "This package provides useful functions to edit ggplot object (e.g., +setting fonts for theme and layers, adding rounded rectangle as background for +each of the legends).") + (license license:artistic2.0))) + (define-public r-gridtext (package (name "r-gridtext") @@ -18490,14 +18598,14 @@ classification and regression models.") (define-public r-dae (package (name "r-dae") - (version "3.1-37") + (version "3.2-10") (source (origin (method url-fetch) (uri (cran-uri "dae" version)) (sha256 (base32 - "102fgbdpn7yvm1zj180cv4sr1096sz35d4gndsv7w9kriqyi1c1l")))) + "1z5vxxzzpqfl78c2c60109jdr003j48qjisj3mrhsxa89wdv9hs9")))) (build-system r-build-system) (propagated-inputs `(("r-ggplot2" ,r-ggplot2) @@ -19186,14 +19294,14 @@ emphasize hidden group structures in networks or focus on specific nodes.") (define-public r-terra (package (name "r-terra") - (version "1.3-4") + (version "1.3-22") (source (origin (method url-fetch) (uri (cran-uri "terra" version)) (sha256 (base32 - "04fcraicr79vrvzqfxqsgzqp6awf2g5qrvpi76dcm3c04i5z3rlc")))) + "1z5zql68q4n81ccpl02hndhbavhhqs65bli1hjxlqdwdq192whkh")))) (properties `((upstream-name . "terra"))) (build-system r-build-system) (inputs @@ -19952,14 +20060,14 @@ server-side.") (define-public r-sysfonts (package (name "r-sysfonts") - (version "0.8.4") + (version "0.8.5") (source (origin (method url-fetch) (uri (cran-uri "sysfonts" version)) (sha256 (base32 - "0bq48hf2h4dkxymc36ypqvbwx5lbyj2m6fsikmgqiy4ixjpbvz8h")))) + "1fhf0x5sqx3mv72j9d0clkq1qzqiqxbxn1h808f7ccf0mb04v43y")))) (properties `((upstream-name . "sysfonts"))) (build-system r-build-system) (inputs @@ -20000,14 +20108,14 @@ package.") (define-public r-showtext (package (name "r-showtext") - (version "0.9-3") + (version "0.9-4") (source (origin (method url-fetch) (uri (cran-uri "showtext" version)) (sha256 (base32 - "0ghxd5la8is2mz5w7lk507zgcpr5lz30miqyhyn9cqazlsfwp4wa")))) + "1gvj32wrs5q31bmg5dy6n85d0igm3jhkldhdv8kscw0pfrk89y36")))) (properties `((upstream-name . "showtext"))) (build-system r-build-system) (inputs @@ -21215,13 +21323,13 @@ management} (aCRM).") (define-public r-tree (package (name "r-tree") - (version "1.0-40") + (version "1.0-41") (source (origin (method url-fetch) (uri (cran-uri "tree" version)) (sha256 (base32 - "1rr6ws62j9h36f3nl713f8h3ndkh95mv46l055jvgmby5lw1dazz")))) + "13jwdxx3na16mly176n01zdkaqn4a8x9fc43rq5xx5vx31drkkr1")))) (build-system r-build-system) (home-page "https://cran.r-project.org/web/packages/tree/") (synopsis "Classification and regression trees") @@ -23147,14 +23255,14 @@ Norwegian, Portuguese, Romanian, Russian, Spanish, Swedish and Turkish.") (define-public r-quanteda (package (name "r-quanteda") - (version "3.0.0") + (version "3.1.0") (source (origin (method url-fetch) (uri (cran-uri "quanteda" version)) (sha256 (base32 - "0b1jfkdhpsg5jhjz4p0nf4cmi9p8w40wv3i2f17jf2x1n1y2hjj8")))) + "0gafbb73gcxx2gq9q7bg88alyhymkr471lp394m5ydij6mdm4hb9")))) (properties `((upstream-name . "quanteda"))) (build-system r-build-system) (propagated-inputs @@ -23495,14 +23603,14 @@ and analyze Stan models.") (define-public r-rpf (package (name "r-rpf") - (version "1.0.7") + (version "1.0.8") (source (origin (method url-fetch) (uri (cran-uri "rpf" version)) (sha256 (base32 - "04n605h091d6nijbbhar79zj7gfkymb6pp7v1496avzajy483klw")))) + "039r6yz2ax7i9sv8vi98yg7llwb966ay6mrifpmp6q3xh1f634kl")))) (properties `((upstream-name . "rpf"))) (build-system r-build-system) (propagated-inputs @@ -23934,14 +24042,14 @@ interesting features. iheatmapr uses the plotly library for interactivity.") (define-public r-packrat (package (name "r-packrat") - (version "0.6.0") + (version "0.7.0") (source (origin (method url-fetch) (uri (cran-uri "packrat" version)) (sha256 (base32 - "01cn2vf95nc8bh0hh8imkn030yra3hx64q1fb8jwsr52p9s397fr")))) + "1hnwhdgqljqs3m7c4rjlyndyc0k85jpa4rbfymxkm3zjg3yy3g78")))) (properties `((upstream-name . "packrat"))) (build-system r-build-system) (home-page "https://github.com/rstudio/packrat/") @@ -23955,14 +24063,14 @@ and reproducible way.") (define-public r-rsconnect (package (name "r-rsconnect") - (version "0.8.18") + (version "0.8.24") (source (origin (method url-fetch) (uri (cran-uri "rsconnect" version)) (sha256 (base32 - "01bj16iggj5fggfa7n312458p8xg30zx2vzfkd8jqcchnbrphfvl")))) + "19p4w9dmhsl1vdvwv3hfmd5qzf4296g0x878idfajvrx0wgfysyg")))) (properties `((upstream-name . "rsconnect"))) (build-system r-build-system) (propagated-inputs @@ -24347,14 +24455,14 @@ climate data.") (define-public r-rlinsolve (package (name "r-rlinsolve") - (version "0.3.1") + (version "0.3.2") (source (origin (method url-fetch) (uri (cran-uri "Rlinsolve" version)) (sha256 (base32 - "1x02xxbkchcwwfa2123n9yqfzinfi0zba8zxhp977czzwysy75cc")))) + "1xv500n1480qyakw0isanw1s5ywykhc207hqja4804s5s2m8zfjw")))) (properties `((upstream-name . "Rlinsolve"))) (build-system r-build-system) (propagated-inputs @@ -25024,20 +25132,19 @@ infinite-precision rational arithmetic.") (define-public r-rxnat (package (name "r-rxnat") - (version "1.0.14") + (version "1.0.15") (source (origin (method url-fetch) (uri (cran-uri "Rxnat" version)) (sha256 (base32 - "00fl68pa0c2vy4xlny67pn41lzgm7b97wgg3dwm6z35izca62l11")))) + "0siylypjd8cgcmr2c443w8krg8sgr5gz4zapbinanp8vsfzivdv2")))) (properties `((upstream-name . "Rxnat"))) (build-system r-build-system) (propagated-inputs - `(("r-dplyr" ,r-dplyr) - ("r-httr" ,r-httr) + `(("r-httr" ,r-httr) ("r-rcurl" ,r-rcurl) ("r-tibble" ,r-tibble))) (native-inputs @@ -25190,17 +25297,100 @@ packages, but other reference models can also be used. See the package vignette for more information and examples.") (license license:gpl3))) +(define-public r-distributional + (package + (name "r-distributional") + (version "0.2.2") + (source + (origin + (method url-fetch) + (uri (cran-uri "distributional" version)) + (sha256 + (base32 + "0ps30ijlf0xwranxkq1z29d76d3zgy8drwxpnxp6ffmyma8mm3h2")))) + (properties + `((upstream-name . "distributional"))) + (build-system r-build-system) + (propagated-inputs + `(("r-digest" ,r-digest) + ("r-ellipsis" ,r-ellipsis) + ("r-farver" ,r-farver) + ("r-generics" ,r-generics) + ("r-ggplot2" ,r-ggplot2) + ("r-lifecycle" ,r-lifecycle) + ("r-numderiv" ,r-numderiv) + ("r-rlang" ,r-rlang) + ("r-scales" ,r-scales) + ("r-vctrs" ,r-vctrs))) + (home-page "https://pkg.mitchelloharawild.com/distributional/") + (synopsis "Vectorized probability distributions") + (description + "This package provides vectorized distribution objects with tools for +manipulating, visualizing, and using probability distributions. It was +designed to allow model prediction outputs to return distributions rather than +their parameters, allowing users to directly interact with predictive +distributions in a data-oriented workflow. In addition to providing generic +replacements for p/d/q/r functions, other useful statistics can be computed +including means, variances, intervals, and highest density regions.") + (license license:gpl3))) + +(define-public r-posterior + (package + (name "r-posterior") + (version "1.0.1") + (source + (origin + (method url-fetch) + (uri (cran-uri "posterior" version)) + (sha256 + (base32 + "000k2sih7r89nmw3nwndx5jljcvkyr61b96mdkqrw83rs74lnh6f")))) + (properties `((upstream-name . "posterior"))) + (build-system r-build-system) + (propagated-inputs + `(("r-abind" ,r-abind) + ("r-checkmate" ,r-checkmate) + ("r-distributional" ,r-distributional) + ("r-pillar" ,r-pillar) + ("r-rlang" ,r-rlang) + ("r-tensora" ,r-tensora) + ("r-tibble" ,r-tibble) + ("r-vctrs" ,r-vctrs))) + (native-inputs + `(("r-knitr" ,r-knitr))) + (home-page "https://mc-stan.org/posterior/") + (synopsis "Tools for working with posterior distributions") + (description + "This package provides useful tools for both users and developers of +packages for fitting Bayesian models or working with output from Bayesian +models. The primary goals of the package are to: + +@enumerate +@item Efficiently convert between many different useful formats of +draws (samples) from posterior or prior distributions. + +@item Provide consistent methods for operations commonly performed on draws, +for example, subsetting, binding, or mutating draws. + +@item Provide various summaries of draws in convenient formats. + +@item Provide lightweight implementations of state of the art posterior +inference diagnostics. +@end enumerate +") + (license license:bsd-3))) + (define-public r-brms (package (name "r-brms") - (version "2.15.0") + (version "2.16.0") (source (origin (method url-fetch) (uri (cran-uri "brms" version)) (sha256 (base32 - "0byc3fyvf9qbvvgwf55ih5d4br1nnxlbaidq9fvr11bmv38h25y1")))) + "14ykj7h0pzyzsyd1c46ybapsz3aqnffjih5hm7khfa5jk05wbs7a")))) (properties `((upstream-name . "brms"))) (build-system r-build-system) (propagated-inputs @@ -25218,6 +25408,7 @@ vignette for more information and examples.") ("r-mgcv" ,r-mgcv) ("r-nleqslv" ,r-nleqslv) ("r-nlme" ,r-nlme) + ("r-posterior" ,r-posterior) ("r-projpred" ,r-projpred) ("r-rcpp" ,r-rcpp) ("r-rstan" ,r-rstan) @@ -25279,21 +25470,21 @@ multi-state models.") (define-public r-scatterpie (package (name "r-scatterpie") - (version "0.1.6") + (version "0.1.7") (source (origin (method url-fetch) (uri (cran-uri "scatterpie" version)) (sha256 (base32 - "1lilzybbxqhrjpwwf9050wf5f896pn5d93llp5da7ssrcn5bm9i8")))) + "1pmspv8a7k20zyd5xvmav2k9mnjrkfhdij3rr9k504zyki8hfy1z")))) (properties `((upstream-name . "scatterpie"))) (build-system r-build-system) (propagated-inputs `(("r-ggforce" ,r-ggforce) + ("r-ggfun" ,r-ggfun) ("r-ggplot2" ,r-ggplot2) ("r-rlang" ,r-rlang) - ("r-rvcheck" ,r-rvcheck) ("r-tidyr" ,r-tidyr))) (native-inputs `(("r-knitr" ,r-knitr))) @@ -27361,24 +27552,28 @@ functions or computational engines (e.g. R, Spark, Stan, etc).") (define-public r-infer (package (name "r-infer") - (version "0.5.4") + (version "1.0.0") (source (origin (method url-fetch) (uri (cran-uri "infer" version)) (sha256 (base32 - "0wvvgqjhyv7ql98cjzqad61wbmk7xrqd1ybk894jr5cmza13c8w2")))) + "1qbpcn7jqbvgwnpiyylj021j8m33p58a204yd1pfkpzd3x2lbsm6")))) (properties `((upstream-name . "infer"))) (build-system r-build-system) (propagated-inputs - `(("r-dplyr" ,r-dplyr) + `(("r-broom" ,r-broom) + ("r-dplyr" ,r-dplyr) + ("r-generics" ,r-generics) ("r-ggplot2" ,r-ggplot2) ("r-glue" ,r-glue) ("r-magrittr" ,r-magrittr) + ("r-patchwork" ,r-patchwork) ("r-purrr" ,r-purrr) ("r-rlang" ,r-rlang) - ("r-tibble" ,r-tibble))) + ("r-tibble" ,r-tibble) + ("r-tidyr" ,r-tidyr))) (native-inputs `(("r-knitr" ,r-knitr))) (home-page "https://github.com/tidymodels/infer") @@ -27787,13 +27982,13 @@ other R users.") (define-public r-seurat (package (name "r-seurat") - (version "4.0.3") + (version "4.0.4") (source (origin (method url-fetch) (uri (cran-uri "Seurat" version)) (sha256 (base32 - "1jfzkqnk4r82ssyz6h51n2jybkdcjkpjdb2la6n2xqnfs2b8dnbm")))) + "1pa2v29mx39swblzwzqc7rpql2rizhi2nj426r1i63wyla6lcxc0")))) (properties `((upstream-name . "Seurat"))) (build-system r-build-system) (propagated-inputs @@ -28183,20 +28378,20 @@ implemented as @code{R6} classes.") (define-public r-mlr3 (package (name "r-mlr3") - (version "0.11.0") + (version "0.12.0") (source (origin (method url-fetch) (uri (cran-uri "mlr3" version)) (sha256 (base32 - "0qh9vdac1als2123wf51bwa7spdqk33iydlawi5n5dpci892iahl")))) + "0nimwczsgrj29r9qrlz32qc3fkj02369zql7jhkrn3lk3mfy5zmz")))) (build-system r-build-system) (propagated-inputs `(("r-r6" ,r-r6) ("r-backports" ,r-backports) ("r-checkmate" ,r-checkmate) ("r-data-table" ,r-data-table) - ("r-digest" ,r-digest) + ("r-future" ,r-future) ("r-future-apply" ,r-future-apply) ("r-lgr" ,r-lgr) ("r-mlbench" ,r-mlbench) @@ -28219,16 +28414,17 @@ computational operations, add-on packages provide additional functionality.") (define-public r-mlr3learners (package (name "r-mlr3learners") - (version "0.4.5") + (version "0.5.0") (source (origin (method url-fetch) (uri (cran-uri "mlr3learners" version)) (sha256 (base32 - "02v4y32yn1m0akkqzhfg65ib21rgy9iz8db4kdcrvi949clkxnfk")))) + "1gkbbn5ah2iv4pv5q2jf4lrqkga744d4y9jlyhyjqf0x75y9wkg2")))) (build-system r-build-system) (propagated-inputs - `(("r-data-table" ,r-data-table) + `(("r-checkmate" ,r-checkmate) + ("r-data-table" ,r-data-table) ("r-mlr3" ,r-mlr3) ("r-mlr3misc" ,r-mlr3misc) ("r-paradox" ,r-paradox) @@ -28881,14 +29077,14 @@ and word lists.") (define-public r-english (package (name "r-english") - (version "1.2-5") + (version "1.2-6") (source (origin (method url-fetch) (uri (cran-uri "english" version)) (sha256 (base32 - "0d6rin40wy2y6k75x8d5qvf03rfy139f309wrl8xwbdb1h8fjkd1")))) + "1g3nmy5p8wj3ix1vp1qmkmy3dyqisrw0md8cjrx4klqkp0wqlms9")))) (properties `((upstream-name . "english"))) (build-system r-build-system) (native-inputs `(("r-knitr" ,r-knitr))) @@ -29498,14 +29694,14 @@ variability than the Poisson, but less than the negative binomial.") (define-public r-rjsonio (package (name "r-rjsonio") - (version "1.3-1.4") + (version "1.3-1.5") (source (origin (method url-fetch) (uri (cran-uri "RJSONIO" version)) (sha256 (base32 - "141ijm9570mg1180isvi0jb9vd3b08s5gb9dl1wa5v0m3s9jq52l")))) + "1dp9kdf0ca27br1wsq9pj7d55n601achpbzdzxhykzz531xhmjrl")))) (properties `((upstream-name . "RJSONIO"))) (build-system r-build-system) (home-page "https://cran.r-project.org/package=RJSONIO") @@ -29572,14 +29768,14 @@ quantitative real-time polymerase chain reaction (qPCR).") (define-public r-textplot (package (name "r-textplot") - (version "0.1.4") + (version "0.2.0") (source (origin (method url-fetch) (uri (cran-uri "textplot" version)) (sha256 (base32 - "1sgkndy2cxk8c76h8hwajn6f78w5jj2n8vsmaxh9kj931crzn8cy")))) + "1fhnwbcgkliq71lry21762djhlbap1qg4mgil0np46aa6619l21m")))) (properties `((upstream-name . "textplot"))) (build-system r-build-system) (propagated-inputs @@ -29794,14 +29990,14 @@ time zone manipulations.") (define-public r-vroom (package (name "r-vroom") - (version "1.5.3") + (version "1.5.4") (source (origin (method url-fetch) (uri (cran-uri "vroom" version)) (sha256 (base32 - "0hjb9qxv1ma7c38pihqhypc9l55ad1i1dfzxsz56jn3jsiw29ya4")))) + "15gbr35pmbnxjy0la2h20c0vf64q69gk7k996gn8b5wn3klxvg7n")))) (properties `((upstream-name . "vroom"))) (build-system r-build-system) (propagated-inputs @@ -29912,13 +30108,13 @@ reading and writing arbitrary protocol-buffer data in R.") (define-public r-opencpu (package (name "r-opencpu") - (version "2.2.4") + (version "2.2.5") (source (origin (method url-fetch) (uri (cran-uri "opencpu" version)) (sha256 - (base32 "0f0lrqfzzrbaimd39v1gzdirf0zpkc5n58z8jj5nl6jb6mppf4qk")))) + (base32 "1qlwx8iq30qfy2sh0v31pxg955bj4zs0r7v8yklbdwb3qw7kv30g")))) (properties `((upstream-name . "opencpu"))) (build-system r-build-system) (inputs @@ -30116,26 +30312,49 @@ functions to retrieve the directory of the latest run or latest several runs.") (license license:asl2.0))) +(define-public r-tfautograph + (package + (name "r-tfautograph") + (version "0.3.1") + (source + (origin + (method url-fetch) + (uri (cran-uri "tfautograph" version)) + (sha256 + (base32 + "1fgpvv330g61ghzhkwnzx04gd9l3d6x1vxd1xqslb05h5acagwqn")))) + (properties `((upstream-name . "tfautograph"))) + (build-system r-build-system) + (inputs `(("tensorflow" ,tensorflow))) + (propagated-inputs + `(("r-reticulate" ,r-reticulate))) + (home-page "https://t-kalinowski.github.io/tfautograph/") + (synopsis "Autograph R for Tensorflow") + (description + "This package lets you translate R control flow expressions into +Tensorflow graphs.") + (license license:gpl3))) + (define-public r-tensorflow (package (name "r-tensorflow") - (version "2.5.0") + (version "2.6.0") (source (origin (method url-fetch) (uri (cran-uri "tensorflow" version)) (sha256 (base32 - "00g9w4xmdyjl4578kmhng58k7afjkj2vwgcq2ik8rqwljkcz5pph")))) + "1lkzxc3b5gkcg4hwqr57cysplcba6ff44qz8lbvk19kxnrhjaf9g")))) (properties `((upstream-name . "tensorflow"))) (build-system r-build-system) (inputs `(("tensorflow" ,tensorflow))) (propagated-inputs `(("r-config" ,r-config) - ("r-jsonlite" ,r-jsonlite) ("r-processx" ,r-processx) ("r-reticulate" ,r-reticulate) ("r-rstudioapi" ,r-rstudioapi) + ("r-tfautograph" ,r-tfautograph) ("r-tfruns" ,r-tfruns) ("r-yaml" ,r-yaml))) (home-page "https://github.com/rstudio/tensorflow") @@ -30150,18 +30369,20 @@ between them.") (define-public r-keras (package (name "r-keras") - (version "2.4.0") + (version "2.6.0") (source (origin (method url-fetch) (uri (cran-uri "keras" version)) (sha256 (base32 - "00bw5f5d81md8db1k6bf2a91by4k25xvlwxiwv188y4vw3bfc7md")))) + "1pgdcypp9x9dw7aa5ka7qqgd24jdcp3ja94jpm7j6l6j4930k5vd")))) (properties `((upstream-name . "keras"))) (build-system r-build-system) (propagated-inputs - `(("r-generics" ,r-generics) + `(("r-ellipsis" ,r-ellipsis) + ("r-generics" ,r-generics) + ("r-glue" ,r-glue) ("r-magrittr" ,r-magrittr) ("r-r6" ,r-r6) ("r-reticulate" ,r-reticulate) @@ -30179,3 +30400,1031 @@ experimentation, supports both convolution based networks and recurrent networks (as well as combinations of the two), and runs seamlessly on both CPU and GPU devices.") (license license:expat))) + +(define-public r-zzlite + (package + (name "r-zzlite") + (version "0.1.2") + (source + (origin + (method url-fetch) + (uri (cran-uri "zzlite" version)) + (sha256 + (base32 + "0vi1slx2s4r5zf82lazqv0c3m12xq73wlgsbz6af4y00h0bkr3ps")))) + (properties `((upstream-name . "zzlite"))) + (build-system r-build-system) + (propagated-inputs + `(("r-httr" ,r-httr) + ("r-jsonlite" ,r-jsonlite))) + (native-inputs + `(("r-knitr" ,r-knitr))) + (home-page "https://cran.r-project.org/package=zzlite") + (synopsis "Wrapper for the Zamzar file conversion API") + (description + "This package provides a minor collection of HTTP wrappers for the Zamzar +file conversion API. The wrappers makes it easy to utilize the API and thus +convert between more than 100 different file formats (ranging from audio +files, images, movie formats, etc., etc.) through an R session.") + (license license:gpl3))) + +(define-public r-ztree + (package + (name "r-ztree") + (version "1.0.6") + (source + (origin + (method url-fetch) + (uri (cran-uri "zTree" version)) + (sha256 + (base32 + "1mywxrx6bw7dzhrdwyxbjzc8ikgvw423zycyji0jjr69cfhpmywv")))) + (properties `((upstream-name . "zTree"))) + (build-system r-build-system) + (propagated-inputs + `(("r-plyr" ,r-plyr))) + (home-page "https://cran.r-project.org/package=zTree") + (synopsis "Functions to import data from z-Tree into R") + (description + "This package provides tools for reading @code{.xls} and @code{.sbj} +files which are written by the proprietary program z-Tree for developing and +carrying out economic experiments.") + (license license:gpl3))) + +(define-public r-distributionutils + (package + (name "r-distributionutils") + (version "0.6-0") + (source + (origin + (method url-fetch) + (uri (cran-uri "DistributionUtils" version)) + (sha256 + (base32 + "08vq54pyqxlqsj6q6gsg5ikqa0z3x842j52ld5dxaq272p6xchvl")))) + (properties + `((upstream-name . "DistributionUtils"))) + (build-system r-build-system) + (native-inputs + `(("gfortran" ,gfortran))) + (home-page "https://cran.r-project.org/package=DistributionUtils") + (synopsis "Distribution utilities") + (description + "This package provides utilities for dealing with distributions. +Functionality includes sample skewness and kurtosis, log-histogram, tail +plots, moments by integration, changing the point about which a moment is +calculated, functions for testing distributions using inversion tests and the +Massart inequality. Also included is an implementation of the incomplete +Bessel K function.") + (license license:gpl2+))) + +(define-public r-ztpln + (package + (name "r-ztpln") + (version "0.1.1") + (source + (origin + (method url-fetch) + (uri (cran-uri "ztpln" version)) + (sha256 + (base32 + "18rbfdp22jaxg4nkqzj2393nhjdl1gzv4xhmr6aci76ymdixsfnl")))) + (properties `((upstream-name . "ztpln"))) + (build-system r-build-system) + (propagated-inputs + `(("r-distributionutils" ,r-distributionutils) + ("r-mixtools" ,r-mixtools) + ("r-rcpp" ,r-rcpp) + ("r-rcppeigen" ,r-rcppeigen) + ("r-rcppnumerical" ,r-rcppnumerical))) + (native-inputs + `(("r-knitr" ,r-knitr))) + (home-page "https://github.com/mattocci27/ztpln") + (synopsis "Zero-truncated Poisson lognormal distribution") + (description + "This package provides functions for obtaining the density, random +variates and maximum likelihood estimates of the Zero-truncated Poisson +lognormal distribution and their mixture distribution.") + (license license:expat))) + +(define-public r-zscorer + (package + (name "r-zscorer") + (version "0.3.1") + (source + (origin + (method url-fetch) + (uri (cran-uri "zscorer" version)) + (sha256 + (base32 + "0aijhs0fyird5gq68x4dxchb02mxa7ijk10k9zjhngghxbjj7iqn")))) + (properties `((upstream-name . "zscorer"))) + (build-system r-build-system) + (propagated-inputs + `(("r-shiny" ,r-shiny))) + (native-inputs + `(("r-knitr" ,r-knitr))) + (home-page "https://github.com/nutriverse/zscorer") + (synopsis "Child Anthropometry z-Score Calculator") + (description + "This package provides a tool for calculating z-scores and centiles for +weight-for-age, length/height-for-age, weight-for-length/height, BMI-for-age, +head circumference-for-age, age circumference-for-age, subscapular +skinfold-for-age, triceps skinfold-for-age based on the WHO Child Growth +Standards.") + (license license:agpl3+))) + +(define-public r-zra + (package + (name "r-zra") + (version "0.2") + (source + (origin + (method url-fetch) + (uri (cran-uri "ZRA" version)) + (sha256 + (base32 + "1sx1q5yf68hhlb5j1hicpj594rmgajqr25llg7ax416j0m2rnagi")))) + (properties `((upstream-name . "ZRA"))) + (build-system r-build-system) + (propagated-inputs + `(("r-dygraphs" ,r-dygraphs) + ("r-forecast" ,r-forecast))) + (home-page "https://cran.r-project.org/package=ZRA") + (synopsis "Dynamic plots for time series forecasting") + (description + "This package combines a forecast of a time series, using the function @code{forecast}, +with the dynamic plots from @code{dygraphs}.") + (license license:gpl2+))) + +(define-public r-rfigshare + (package + (name "r-rfigshare") + (version "0.3.7") + (source + (origin + (method url-fetch) + (uri (cran-uri "rfigshare" version)) + (sha256 + (base32 + "1qgzn0mpjy4czy0pnbi395fxxx84arkg8r7rk8aidmd34584gjiq")))) + (properties `((upstream-name . "rfigshare"))) + (build-system r-build-system) + (propagated-inputs + `(("r-ggplot2" ,r-ggplot2) + ("r-httpuv" ,r-httpuv) + ("r-httr" ,r-httr) + ("r-plyr" ,r-plyr) + ("r-rjsonio" ,r-rjsonio) + ("r-xml" ,r-xml) + ("r-yaml" ,r-yaml))) + (home-page "https://github.com/ropensci/rfigshare") + (synopsis "R Interface to figshare") + (description + "This package provides an interface to figshare, a scientific repository +to archive and assign DOIs to data, software, figures, and more.") + (license license:cc0))) + +(define-public r-dismo + (package + (name "r-dismo") + (version "1.3-3") + (source + (origin + (method url-fetch) + (uri (cran-uri "dismo" version)) + (sha256 + (base32 + "1jj9d78f251bxgrwbv1ycn677qnhvl40bfan12x8fhlaq4d36rgx")))) + (properties `((upstream-name . "dismo"))) + (build-system r-build-system) + (propagated-inputs + `(("r-raster" ,r-raster) + ("r-rcpp" ,r-rcpp) + ("r-sp" ,r-sp))) + (home-page "https://rspatial.org/raster/sdm/") + (synopsis "Species distribution modeling") + (description + "This package provides methods for species distribution modeling, i.e., +predicting the environmental similarity of any site to that of the locations +of known occurrences of a species.") + (license license:gpl3+))) + +(define-public r-zoon + (package + (name "r-zoon") + (version "0.6.5") + (source + (origin + (method url-fetch) + (uri (cran-uri "zoon" version)) + (sha256 + (base32 + "02y29vr2yn8al69km8faiqrwjrc1r3hsvw3dg8lwjr65cxw1krip")))) + (properties `((upstream-name . "zoon"))) + (build-system r-build-system) + (propagated-inputs + `(("r-dismo" ,r-dismo) + ("r-plyr" ,r-plyr) + ("r-randomforest" ,r-randomforest) + ("r-raster" ,r-raster) + ("r-rcurl" ,r-rcurl) + ("r-rfigshare" ,r-rfigshare) + ("r-rgdal" ,r-rgdal) + ("r-roxygen2" ,r-roxygen2) + ("r-rworldmap" ,r-rworldmap) + ("r-sp" ,r-sp) + ("r-testthat" ,r-testthat))) + (native-inputs + `(("r-knitr" ,r-knitr))) + (home-page "https://github.com/zoonproject/zoon") + (synopsis "Reproducible, accessible and shareable species distribution modelling") + (description + "This package reads user submitted modules from an online repository, +runs full species distribution modelling workflows and returns output that is +fully reproducible.") + (license license:bsd-3))) + +(define-public r-paws-common + (package + (name "r-paws-common") + (version "0.3.12") + (source + (origin + (method url-fetch) + (uri (cran-uri "paws.common" version)) + (sha256 + (base32 + "1khq1rv0yij4l0vi2x6hslnzpsd6m5n6nipfac7g3na9ah93h8i9")))) + (properties `((upstream-name . "paws.common"))) + (build-system r-build-system) + (propagated-inputs + `(("r-base64enc" ,r-base64enc) + ("r-digest" ,r-digest) + ("r-httr" ,r-httr) + ("r-jsonlite" ,r-jsonlite) + ("r-xml2" ,r-xml2))) + (home-page "https://cran.r-project.org/package=paws.common") + (synopsis "Paws low-level Amazon Web Services API") + (description + "This package provides functions for making low-level API requests to +Amazon Web Services. The functions handle building, signing, and sending +requests, and receiving responses. They are designed to help build +higher-level interfaces to individual services, such as Simple Storage +Service (S3).") + (license license:asl2.0))) + +(define-public r-paws-customer-engagement + (package + (name "r-paws-customer-engagement") + (version "0.1.12") + (source + (origin + (method url-fetch) + (uri (cran-uri "paws.customer.engagement" version)) + (sha256 + (base32 + "0ac6hzn4ilfjhzdmc9x80999fl18cz16mky31qd3y09m93w2xkdj")))) + (properties + `((upstream-name . "paws.customer.engagement"))) + (build-system r-build-system) + (propagated-inputs + `(("r-paws-common" ,r-paws-common))) + (home-page "https://github.com/paws-r/paws") + (synopsis "Amazon Web Services customer engagement services") + (description + "This package provides an interface to Amazon Web Services customer +engagement services, including Simple Email Service, Connect contact center +service, and more.") + (license license:asl2.0))) + +(define-public r-paws-cost-management + (package + (name "r-paws-cost-management") + (version "0.1.12") + (source + (origin + (method url-fetch) + (uri (cran-uri "paws.cost.management" version)) + (sha256 + (base32 + "0in4f8ygw5g2v6vl3lz2y0v51llglh8b1ymbd04d54xxlgn83knh")))) + (properties + `((upstream-name . "paws.cost.management"))) + (build-system r-build-system) + (propagated-inputs + `(("r-paws-common" ,r-paws-common))) + (home-page "https://github.com/paws-r/paws") + (synopsis "Amazon Web Services cost management services") + (description + "This package provides an interface to Amazon Web Services cost +management services, including cost and usage reports, budgets, pricing, and +more.") + (license license:asl2.0))) + +(define-public r-paws-application-integration + (package + (name "r-paws-application-integration") + (version "0.1.12") + (source + (origin + (method url-fetch) + (uri (cran-uri "paws.application.integration" version)) + (sha256 + (base32 + "0llyd9hc679pad1ih0rcc38q5xxpzinhwrl8cvrkgsjgbc3agq42")))) + (properties + `((upstream-name . "paws.application.integration"))) + (build-system r-build-system) + (propagated-inputs + `(("r-paws-common" ,r-paws-common))) + (home-page "https://github.com/paws-r/paws") + (synopsis "Amazon Web Services application integration services") + (description + "This package provides an interface to Amazon Web Services application +integration services, including Simple Queue Service (SQS) message queue, +Simple Notification Service (SNS) publish/subscribe messaging, and more.") + (license license:asl2.0))) + +(define-public r-paws-security-identity + (package + (name "r-paws-security-identity") + (version "0.1.12") + (source + (origin + (method url-fetch) + (uri (cran-uri "paws.security.identity" version)) + (sha256 + (base32 + "092lz2ipn5iqr593x7ra8c0bj64yf6315mdc3llgwrjyb4vfxif9")))) + (properties + `((upstream-name . "paws.security.identity"))) + (build-system r-build-system) + (propagated-inputs + `(("r-paws-common" ,r-paws-common))) + (home-page "https://github.com/paws-r/paws") + (synopsis "Amazon Web Services security, identity, and compliance services") + (description + "This package provides an interface to Amazon Web Services security, +identity, and compliance services, including the Identity and Access +Management (IAM) service for managing access to services and resources, and +more.") + (license license:asl2.0))) + +(define-public r-paws-analytics + (package + (name "r-paws-analytics") + (version "0.1.12") + (source + (origin + (method url-fetch) + (uri (cran-uri "paws.analytics" version)) + (sha256 + (base32 + "04gnaxmj21l312xkrsd9bisi0bz9h6h5fyhwlqylcxi077z1yb2g")))) + (properties + `((upstream-name . "paws.analytics"))) + (build-system r-build-system) + (propagated-inputs + `(("r-paws-common" ,r-paws-common))) + (home-page "https://github.com/paws-r/paws") + (synopsis "Amazon Web Services analytics services") + (description + "This package provides an interface to Amazon Web Services analytics +services, including Elastic MapReduce Hadoop and Spark big data service, +Elasticsearch search engine, and more.") + (license license:asl2.0))) + +(define-public r-paws-machine-learning + (package + (name "r-paws-machine-learning") + (version "0.1.12") + (source + (origin + (method url-fetch) + (uri (cran-uri "paws.machine.learning" version)) + (sha256 + (base32 + "01w2y5952pk50xjbzby2pc51xrkrzjpfxbmii1b10cl2xgzfkxsa")))) + (properties + `((upstream-name . "paws.machine.learning"))) + (build-system r-build-system) + (propagated-inputs + `(("r-paws-common" ,r-paws-common))) + (home-page "https://github.com/paws-r/paws") + (synopsis "Amazon Web Services machine learning services") + (description + "This package provides an interface to Amazon Web Services machine +learning services, including SageMaker managed machine learning service, +natural language processing, speech recognition, translation, and more.") + (license license:asl2.0))) + +(define-public r-paws-management + (package + (name "r-paws-management") + (version "0.1.12") + (source + (origin + (method url-fetch) + (uri (cran-uri "paws.management" version)) + (sha256 + (base32 + "09k7wg0jlj40zs2yb3vldffpkdcjg7ap98n7c5lxr5plpca08swg")))) + (properties + `((upstream-name . "paws.management"))) + (build-system r-build-system) + (propagated-inputs + `(("r-paws-common" ,r-paws-common))) + (home-page "https://github.com/paws-r/paws") + (synopsis "Amazon Web Services management and governance services") + (description + "This package provides an interface to Amazon Web Services management and +governance services, including CloudWatch application and infrastructure +monitoring, Auto Scaling for automatically scaling resources, and more.") + (license license:asl2.0))) + +(define-public r-paws-networking + (package + (name "r-paws-networking") + (version "0.1.12") + (source + (origin + (method url-fetch) + (uri (cran-uri "paws.networking" version)) + (sha256 + (base32 + "02hxaa5nlj70mdggh379ij3fn09xm8h5ldzsyf45c342prpl6zwj")))) + (properties + `((upstream-name . "paws.networking"))) + (build-system r-build-system) + (propagated-inputs + `(("r-paws-common" ,r-paws-common))) + (home-page "https://github.com/paws-r/paws") + (synopsis "Amazon Web Services networking and content delivery services") + (description + "This package provides an interface to Amazon Web Services networking and +content delivery services, including Route 53 Domain Name System service, +CloudFront content delivery, load balancing, and more.") + (license license:asl2.0))) + +(define-public r-paws-database + (package + (name "r-paws-database") + (version "0.1.12") + (source + (origin + (method url-fetch) + (uri (cran-uri "paws.database" version)) + (sha256 + (base32 + "08jpwz95fw3f68j0wxh2lg57nn60khflldab0ryhkkbcw1iy0qyz")))) + (properties `((upstream-name . "paws.database"))) + (build-system r-build-system) + (propagated-inputs + `(("r-paws-common" ,r-paws-common))) + (home-page "https://github.com/paws-r/paws") + (synopsis + "Amazon Web Services Database Services") + (description + "This package provides an interface to Amazon Web Services database +services, including Relational Database Service (RDS), DynamoDB NoSQL +database, and more.") + (license license:asl2.0))) + +(define-public r-paws-storage + (package + (name "r-paws-storage") + (version "0.1.12") + (source + (origin + (method url-fetch) + (uri (cran-uri "paws.storage" version)) + (sha256 + (base32 + "06m887vpqp5d6k3zxdlga599dsv8v3rladk7xqaxqnld1f17am04")))) + (properties `((upstream-name . "paws.storage"))) + (build-system r-build-system) + (propagated-inputs + `(("r-paws-common" ,r-paws-common))) + (home-page "https://github.com/paws-r/paws") + (synopsis "Amazon Web Services storage services") + (description + "This package provides an interface to Amazon Web Services storage +services, including Simple Storage Service (S3).") + (license license:asl2.0))) + +(define-public r-paws-compute + (package + (name "r-paws-compute") + (version "0.1.12") + (source + (origin + (method url-fetch) + (uri (cran-uri "paws.compute" version)) + (sha256 + (base32 + "1km6fng6il5fcjlrbbndahsw2dr2ql83hwac9wlpd67zm3wy9lky")))) + (properties `((upstream-name . "paws.compute"))) + (build-system r-build-system) + (propagated-inputs + `(("r-paws-common" ,r-paws-common))) + (home-page "https://github.com/paws-r/paws") + (synopsis "Amazon Web Services compute services") + (description + "This package provides an interface to Amazon Web Services compute +services, including Elastic Compute Cloud (EC2), Lambda +functions-as-a-service, containers, batch processing, and more.") + (license license:asl2.0))) + +(define-public r-paws + (package + (name "r-paws") + (version "0.1.11") + (source + (origin + (method url-fetch) + (uri (cran-uri "paws" version)) + (sha256 + (base32 + "1pkwjdrziyh6bhpilx29zsv2nmv60z6fqxgx2kvjqvl8z36yqfhw")))) + (properties `((upstream-name . "paws"))) + (build-system r-build-system) + (propagated-inputs + `(("r-paws-analytics" ,r-paws-analytics) + ("r-paws-application-integration" ,r-paws-application-integration) + ("r-paws-compute" ,r-paws-compute) + ("r-paws-cost-management" ,r-paws-cost-management) + ("r-paws-customer-engagement" ,r-paws-customer-engagement) + ("r-paws-database" ,r-paws-database) + ("r-paws-machine-learning" ,r-paws-machine-learning) + ("r-paws-management" ,r-paws-management) + ("r-paws-networking" ,r-paws-networking) + ("r-paws-security-identity" ,r-paws-security-identity) + ("r-paws-storage" ,r-paws-storage))) + (home-page "https://github.com/paws-r/paws") + (synopsis "Amazon Web Services software development kit") + (description + "This package provides an interface to Amazon Web Services, including +storage, database, and compute services, such as Simple Storage Service (S3), +DynamoDB NoSQL database, and Lambda functions-as-a-service.") + (license license:asl2.0))) + +(define-public r-zoomgroupstats + (package + (name "r-zoomgroupstats") + (version "0.1.0") + (source + (origin + (method url-fetch) + (uri (cran-uri "zoomGroupStats" version)) + (sha256 + (base32 + "0gndiq92cy6gi7f833hdjvqii3cn83wz5rjvygcvjl3dw4pwv966")))) + (properties + `((upstream-name . "zoomGroupStats"))) + (build-system r-build-system) + (propagated-inputs + `(("r-data-table" ,r-data-table) + ("r-dplyr" ,r-dplyr) + ("r-lubridate" ,r-lubridate) + ("r-magick" ,r-magick) + ("r-openxlsx" ,r-openxlsx) + ("r-paws" ,r-paws) + ("r-pbapply" ,r-pbapply) + ("r-stringr" ,r-stringr) + ("r-syuzhet" ,r-syuzhet))) + (native-inputs `(("r-knitr" ,r-knitr))) + (home-page "http://zoomgroupstats.org") + (synopsis "Analyze text, audio, and video from Zoom meetings") + (description + "This package provides utilities for processing and analyzing the files +that are exported from a recorded Zoom meeting. This includes analyzing data +captured through video cameras and microphones, the text-based chat, and +meta-data. You can analyze aspects of the conversation among meeting +participants and their emotional expressions throughout the meeting.") + (license license:expat))) + +(define-public r-zoom + (package + (name "r-zoom") + (version "2.0.4") + (source + (origin + (method url-fetch) + (uri (cran-uri "zoom" version)) + (sha256 + (base32 + "03f5rxfr6ncf1j6vpn7pip21q7ylj4bx0a5xphqb6x6i33lxf1g5")))) + (properties `((upstream-name . "zoom"))) + (build-system r-build-system) + (home-page "https://github.com/cbarbu/R-package-zoom") + (synopsis "Spatial data visualization tool") + (description + "This package provides @code{zm}, a utility that allows you to +zoom/navigate any plot when called with any active plot.") + (license license:gpl3+))) + +(define-public r-zoolog + (package + (name "r-zoolog") + (version "0.4.0") + (source + (origin + (method url-fetch) + (uri (cran-uri "zoolog" version)) + (sha256 + (base32 + "1lgdr4hbpdh1b468i3l9msbj8wcd20m323lv5an9y6dnfb9pm986")))) + (properties `((upstream-name . "zoolog"))) + (build-system r-build-system) + (propagated-inputs + `(("r-rdpack" ,r-rdpack) + ("r-stringi" ,r-stringi))) + (native-inputs + `(("r-knitr" ,r-knitr))) + (home-page "https://josempozo.github.io/zoolog/") + (synopsis "Zooarchaeological analysis with log-ratios") + (description + "This package includes functions and reference data to generate and +manipulate log-ratios (also known as @dfn{log size index} (LSI) values) from +measurements obtained on zooarchaeological material. Log ratios are used to +compare the relative (rather than the absolute) dimensions of animals from +archaeological contexts. The zoolog package is also able to seamlessly +integrate data and references with heterogeneous nomenclature, which is +internally managed by a zoolog thesaurus.") + (license license:gpl3))) + +(define-public r-filehash + (package + (name "r-filehash") + (version "2.4-2") + (source + (origin + (method url-fetch) + (uri (cran-uri "filehash" version)) + (sha256 + (base32 + "14zv7h5195dmfksgk8qvjgc2qq8253vga6267aa1bqs5bpvmdl5n")))) + (properties `((upstream-name . "filehash"))) + (build-system r-build-system) + (home-page "http://github.com/rdpeng/filehash") + (synopsis "Simple key-value database") + (description + "This package implements a simple key-value style database where +character string keys are associated with data values that are stored on the +disk. A simple interface is provided for inserting, retrieving, and deleting +data from the database. Utilities are provided that allow filehash databases +to be treated much like environments and lists are already used in R. These +utilities are provided to encourage interactive and exploratory analysis on +large datasets.") + (license license:gpl2+))) + +(define-public r-mlearning + (package + (name "r-mlearning") + (version "1.0-0") + (source + (origin + (method url-fetch) + (uri (cran-uri "mlearning" version)) + (sha256 + (base32 + "0r8xfaxw83s2r27b8x5qd0k4r5ayxpkafzn9b1a0jvsr87i6520r")))) + (properties `((upstream-name . "mlearning"))) + (build-system r-build-system) + (propagated-inputs + `(("r-class" ,r-class) + ("r-e1071" ,r-e1071) + ("r-ipred" ,r-ipred) + ("r-mass" ,r-mass) + ("r-nnet" ,r-nnet) + ("r-randomforest" ,r-randomforest))) + (home-page "http://www.sciviews.org/zooimage") + (synopsis "Machine learning algorithms with unified interface") + (description + "This package provides a unified interface to various machine learning +algorithms. Confusion matrices are provided too.") + (license license:gpl2+))) + +(define-public r-zooimage + (package + (name "r-zooimage") + (version "5.5.2") + (source + (origin + (method url-fetch) + (uri (cran-uri "zooimage" version)) + (sha256 + (base32 + "0ck8w0zb9l1n9xvjwqshq9q9l8pigy3yslq2hnfbgcwk17kk9mp8")))) + (properties `((upstream-name . "zooimage"))) + (build-system r-build-system) + (propagated-inputs + `(("r-digest" ,r-digest) + ("r-dt" ,r-dt) + ("r-filehash" ,r-filehash) + ("r-jpeg" ,r-jpeg) + ("r-mass" ,r-mass) + ("r-mda" ,r-mda) + ("r-mlearning" ,r-mlearning) + ("r-png" ,r-png) + ("r-shiny" ,r-shiny) + ("r-svdialogs" ,r-svdialogs) + ("r-svmisc" ,r-svmisc) + ("r-tiff" ,r-tiff))) + (home-page "http://www.sciviews.org/zooimage") + (synopsis "Analysis of numerical plankton images") + (description + "This package provides a solution for analyzing digital images of +plankton. In combination with ImageJ, an image analysis system, it processes +digital images, measures individuals, trains for automatic classification of +taxa, and finally, measures plankton samples (abundances, total and partial +size spectra or biomasses, etc.).") + (license license:gpl2+))) + +(define-public r-zooarch + (package + (name "r-zooarch") + (version "1.2") + (source + (origin + (method url-fetch) + (uri (cran-uri "zooaRch" version)) + (sha256 + (base32 + "0grc378xppv0303sf4flfqz5002vq5a23nzbq4bsff41rww7dihc")))) + (properties `((upstream-name . "zooaRch"))) + (build-system r-build-system) + (propagated-inputs `(("r-ggplot2" ,r-ggplot2))) + (native-inputs `(("r-knitr" ,r-knitr))) + (home-page + "https://cran.r-project.org/package=zooaRch") + (synopsis + "Analytical Tools for Zooarchaeological Data") + (description + "The analysis and inference of faunal remains recovered from +archaeological sites concerns the field of zooarchaeology. The zooaRch +package provides analytical tools to make inferences on zooarchaeological +data. Functions in this package allow users to read, manipulate, visualize, +and analyze zooarchaeological data.") + (license license:gpl2+))) + +(define-public r-zonebuilder + (package + (name "r-zonebuilder") + (version "0.0.2") + (source + (origin + (method url-fetch) + (uri (cran-uri "zonebuilder" version)) + (sha256 + (base32 + "0mxf3dz0d6bi5wwjilqivdxhy5ypnq5svky8zygha0clv45l4dmn")))) + (properties `((upstream-name . "zonebuilder"))) + (build-system r-build-system) + (propagated-inputs + `(("r-rcolorbrewer" ,r-rcolorbrewer) + ("r-sf" ,r-sf))) + (native-inputs + `(("r-knitr" ,r-knitr))) + (home-page "https://github.com/zonebuilders/zonebuilder") + (synopsis "Create and explore geographic zoning systems") + (description + "This package provides functions, documentation and example data to help +divide geographic space into discrete polygons (zones). The functions are +motivated by research into the merits of different zoning systems. A flexible +@code{ClockBoard} zoning system is provided, which breaks-up space by +concentric rings and radial lines emanating from a central point.") + (license license:gpl3))) + +(define-public r-zonator + (package + (name "r-zonator") + (version "0.6.0") + (source + (origin + (method url-fetch) + (uri (cran-uri "zonator" version)) + (sha256 + (base32 + "1plxchpd4ypp36phl13pi9yvlrqi3lk83lv5rldrhdqynhcgfw2k")))) + (properties `((upstream-name . "zonator"))) + (build-system r-build-system) + (propagated-inputs + `(("r-ggplot2" ,r-ggplot2) + ("r-raster" ,r-raster) + ("r-rcolorbrewer" ,r-rcolorbrewer) + ("r-reshape2" ,r-reshape2) + ("r-rgdal" ,r-rgdal))) + (native-inputs `(("r-knitr" ,r-knitr))) + (home-page "https://cbig.github.io/zonator/") + (synopsis "Utilities for Zonation spatial conservation prioritization") + (description + "Create new analysis setups and deal with results of Zonation +conservation prioritization software.") + (license license:bsd-2))) + +(define-public r-mmwrweek + (package + (name "r-mmwrweek") + (version "0.1.3") + (source + (origin + (method url-fetch) + (uri (cran-uri "MMWRweek" version)) + (sha256 + (base32 + "1l1ks44v52iggw9nhs56lfj6804yab5b17k8fzrc6h1kvj3vda0s")))) + (properties `((upstream-name . "MMWRweek"))) + (build-system r-build-system) + (home-page "http://wwwn.cdc.gov/nndss/document/MMWR_Week_overview.pdf") + (synopsis "Convert dates to MMWR day, week, and year") + (description + "The first day of any MMWR week is Sunday. MMWR week numbering is +sequential beginning with 1 and incrementing with each week to a maximum of 52 +or 53. MMWR week #1 of an MMWR year is the first week of the year that has at +least four days in the calendar year. This package provides functionality to +convert dates to MMWR day, week, and year and the reverse.") + (license license:gpl2+))) + +(define-public r-crul + (package + (name "r-crul") + (version "1.1.0") + (source + (origin + (method url-fetch) + (uri (cran-uri "crul" version)) + (sha256 + (base32 + "1kjsc5gkx5k5cfwlfjp2cjm9cdzq2l1m68bnrjmahw3lkz8wzdph")))) + (properties `((upstream-name . "crul"))) + (build-system r-build-system) + (propagated-inputs + `(("r-curl" ,r-curl) + ("r-httpcode" ,r-httpcode) + ("r-jsonlite" ,r-jsonlite) + ("r-mime" ,r-mime) + ("r-r6" ,r-r6) + ("r-urltools" ,r-urltools))) + (native-inputs `(("r-knitr" ,r-knitr))) + (home-page "https://github.com/ropensci/crul") + (synopsis "HTTP client") + (description + "This package provides a simple HTTP client, with tools for making HTTP +requests, and mocking HTTP requests. The package is built on R6, and takes +inspiration from Ruby's @code{faraday} gem.") + (license license:expat))) + +(define-public r-fauxpas + (package + (name "r-fauxpas") + (version "0.5.0") + (source + (origin + (method url-fetch) + (uri (cran-uri "fauxpas" version)) + (sha256 + (base32 + "129fzqb7wsskbn50s8x0marr4wm8jrns6hiycqcsk166k3dnyyy8")))) + (properties `((upstream-name . "fauxpas"))) + (build-system r-build-system) + (propagated-inputs + `(("r-httpcode" ,r-httpcode) + ("r-r6" ,r-r6) + ("r-whisker" ,r-whisker))) + (native-inputs + `(("r-knitr" ,r-knitr))) + (home-page "https://docs.ropensci.org/fauxpas") + (synopsis "HTTP error helpers") + (description + "This package provides HTTP error helpers. Methods are included for +general purpose HTTP error handling, as well as individual methods for every +HTTP status code, both via status code numbers as well as their descriptive +names. It supports the ability to adjust behavior to stop, message or +warning. It includes the ability to use a custom whisker template to have any +configuration of status code, short description, and verbose message.") + (license license:expat))) + +(define-public r-webmockr + (package + (name "r-webmockr") + (version "0.8.0") + (source + (origin + (method url-fetch) + (uri (cran-uri "webmockr" version)) + (sha256 + (base32 + "0j40srwi0yasmllb9wsww4m6zkiyzqd549cis4dxd7c7p24hak8j")))) + (properties `((upstream-name . "webmockr"))) + (build-system r-build-system) + (propagated-inputs + `(("r-base64enc" ,r-base64enc) + ("r-crul" ,r-crul) + ("r-curl" ,r-curl) + ("r-fauxpas" ,r-fauxpas) + ("r-jsonlite" ,r-jsonlite) + ("r-magrittr" ,r-magrittr) + ("r-r6" ,r-r6) + ("r-urltools" ,r-urltools))) + (home-page "https://github.com/ropensci/webmockr") + (synopsis "Stubbing and setting expectations on HTTP Requests") + (description + "This is a package for stubbing and setting expectations on HTTP +requests. It includes tools for stubbing HTTP requests, including expected +request conditions and response conditions. You can match on HTTP method, +query parameters, request body, headers and more. It can be used for unit +tests or outside of a testing context.") + (license license:expat))) + +(define-public r-mockery + (package + (name "r-mockery") + (version "0.4.2") + (source + (origin + (method url-fetch) + (uri (cran-uri "mockery" version)) + (sha256 + (base32 + "16zayzi2qdmiy513hvlci9f4p8jwry24006yfzrgmrvf6sf293lq")))) + (properties `((upstream-name . "mockery"))) + (build-system r-build-system) + (propagated-inputs + `(("r-testthat" ,r-testthat))) + (native-inputs + `(("r-knitr" ,r-knitr))) + (home-page "https://github.com/jfiksel/mockery") + (synopsis "Mocking library for R") + (description + "The two main functionalities of this package are creating mock +objects (functions) and selectively intercepting calls to a given function +that originate in some other function. It can be used with any testing +framework available for R. Mock objects can be injected with either this +package's own @code{stub} function or a similar @code{with_mock} facility +present in the @code{testthat} package.") + (license license:expat))) + +(define-public r-zoltr + (package + (name "r-zoltr") + (version "0.5.1") + (source + (origin + (method url-fetch) + (uri (cran-uri "zoltr" version)) + (sha256 + (base32 + "12zh7y3pwidclscgvd0b0iaqq9j5y8mc8xd6pz4vs0jy5qs3ahar")))) + (properties `((upstream-name . "zoltr"))) + (build-system r-build-system) + (propagated-inputs + `(("r-base64url" ,r-base64url) + ("r-dplyr" ,r-dplyr) + ("r-httr" ,r-httr) + ("r-jsonlite" ,r-jsonlite) + ("r-magrittr" ,r-magrittr) + ("r-mmwrweek" ,r-mmwrweek) + ("r-mockery" ,r-mockery) + ("r-readr" ,r-readr) + ("r-rlang" ,r-rlang) + ("r-webmockr" ,r-webmockr))) + (native-inputs `(("r-knitr" ,r-knitr))) + (home-page "https://github.com/reichlab/zoltr") + (synopsis "Interface to the Zoltar forecast repository API") + (description + "Zoltar is a website that provides a repository of model forecast results +in a standardized format and a central location. It supports storing, +retrieving, comparing, and analyzing time series forecasts for prediction +challenges of interest to the modeling community. This package provides +functions for working with the Zoltar API, including connecting and +authenticating, getting information about projects, models, and forecasts, +deleting and uploading forecast data, and downloading scores.") + (license license:gpl3))) + +(define-public r-zoib + (package + (name "r-zoib") + (version "1.5.5") + (source + (origin + (method url-fetch) + (uri (cran-uri "zoib" version)) + (sha256 + (base32 + "0inm7f2pc68ksqxvq12xp9jc99vj7ydylvs24ip12nksbj5k1n8f")))) + (properties `((upstream-name . "zoib"))) + (build-system r-build-system) + (propagated-inputs + `(("r-abind" ,r-abind) + ("r-coda" ,r-coda) + ("r-formula" ,r-formula) + ("r-rjags" ,r-rjags))) + (home-page "https://www.r-project.org") + (synopsis "Bayesian inference for beta regression") + (description + "This package lets you fit beta regression and zero-or-one inflated beta +regression and obtain Bayesian inference of the model via the Markov Chain +Monte Carlo approach implemented in JAGS.") + (license license:gpl3+))) |