diff options
Diffstat (limited to 'gnu/packages/cran.scm')
-rw-r--r-- | gnu/packages/cran.scm | 374 |
1 files changed, 234 insertions, 140 deletions
diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index 0939c4d5a6..59a409f8e9 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -29,6 +29,7 @@ ;;; Copyright © 2020 Lars-Dominik Braun <ldb@leibniz-psychology.org> ;;; Copyright © 2020 Vinicius Monego <monego@posteo.net> ;;; Copyright © 2020 Antoine Côté <antoine.cote@posteo.net> +;;; Copyright © 2020 Arun Isaac <arunisaac@systemreboot.net> ;;; ;;; This file is part of GNU Guix. ;;; @@ -99,14 +100,14 @@ (define-public r-rticles (package (name "r-rticles") - (version "0.15") + (version "0.16") (source (origin (method url-fetch) (uri (cran-uri "rticles" version)) (sha256 (base32 - "0svh2bcqnlqdxdpw5afz1b980i2q13k8cxpq6flfqbi3dlwf3h8l")))) + "1ca3k5sdy9mnm6frcimqwf5k18j14wn69x5iagjnjwhq711l8dv0")))) (properties `((upstream-name . "rticles"))) (build-system r-build-system) (propagated-inputs @@ -989,18 +990,20 @@ directory.") (define-public r-htmlwidgets (package (name "r-htmlwidgets") - (version "1.5.1") + (version "1.5.2") (source (origin (method url-fetch) (uri (cran-uri "htmlwidgets" version)) (sha256 (base32 - "10fp306l1nybkah6jrlrqwwdb6zvklbddp8i3w9v9naj8la5jbnl")))) + "0072wlkl58lav3qszzqw6pmx8qra4784r0yb6rx4lg7rbrik6335")))) (build-system r-build-system) (propagated-inputs `(("r-htmltools" ,r-htmltools) ("r-jsonlite" ,r-jsonlite) ("r-yaml" ,r-yaml))) + (native-inputs + `(("r-knitr" ,r-knitr))) (home-page "https://github.com/ramnathv/htmlwidgets") (synopsis "HTML Widgets for R") (description @@ -1012,13 +1015,13 @@ applications.") (define-public r-htmltable (package (name "r-htmltable") - (version "2.0.1") + (version "2.1.0") (source (origin (method url-fetch) (uri (cran-uri "htmlTable" version)) (sha256 - (base32 "0ma52kajzxfg9w811d6ldhghzn9xhyr8bh7k5v265k82bzx7rac6")))) + (base32 "1gzh0bdxi55p1ckxv4k0a41b1j0grwv2w3lkqz4c3gkw66dk6ja0")))) (properties `((upstream-name . "htmlTable"))) (build-system r-build-system) (propagated-inputs @@ -2409,14 +2412,14 @@ compare different dendrograms to one another.") (define-public r-getoptlong (package (name "r-getoptlong") - (version "1.0.2") + (version "1.0.3") (source (origin (method url-fetch) (uri (cran-uri "GetoptLong" version)) (sha256 (base32 - "1p89v2qzqfxyrmqzkv245716n9i4bllnq77a6gw811mgdhxbd51l")))) + "142gi3ifpcz1rhqrbw4wh326jn2q61s659wkzf92ys4dybs43dky")))) (properties `((upstream-name . "GetoptLong"))) (build-system r-build-system) (inputs @@ -3171,19 +3174,21 @@ available in a vignette.") (define-public r-lava (package (name "r-lava") - (version "1.6.7") + (version "1.6.8") (source (origin (method url-fetch) (uri (cran-uri "lava" version)) (sha256 (base32 - "0ffzxbb8pvfh1m6j61az4ga37snyhylq2941fyc76w7w9i2sixv3")))) + "0jdmjjs894mfncswmzz7sa6cy7hqbqii5fcvl3zqkmzpbadb2za2")))) (build-system r-build-system) (propagated-inputs `(("r-numderiv" ,r-numderiv) ("r-squarem" ,r-squarem) ("r-survival" ,r-survival))) + (native-inputs + `(("r-knitr" ,r-knitr))) (home-page "https://github.com/kkholst/lava") (synopsis "Latent variable models") (description @@ -3525,14 +3530,14 @@ problems as well as resampling based estimators of prediction error.") (define-public r-psych (package (name "r-psych") - (version "2.0.8") + (version "2.0.9") (source (origin (method url-fetch) (uri (cran-uri "psych" version)) (sha256 (base32 - "0ymds7ql2dv994m73h68dnhbsws8bl09p2rqvl6xsq6c6xr0yryg")))) + "0wdh580a0psbdil28n0d85hnp42wmn11hcbnihjq8r7h54drgzpn")))) (build-system r-build-system) (propagated-inputs `(("r-lattice" ,r-lattice) @@ -3578,14 +3583,14 @@ by base R methods related to model fitting.") (define-public r-broom (package (name "r-broom") - (version "0.7.0") + (version "0.7.1") (source (origin (method url-fetch) (uri (cran-uri "broom" version)) (sha256 (base32 - "0bq8w1ckrladzck2g0mgiyjdrzi06kbqalk5q3pfvj1607fdv3d5")))) + "12xnpmm1cyhksv4gwcrwgrpw7c0xf1c7chlpng9lk8arifbfvqpg")))) (build-system r-build-system) (propagated-inputs `(("r-backports" ,r-backports) @@ -3986,14 +3991,14 @@ programming} (SQP) based solver).") (define-public r-hardyweinberg (package (name "r-hardyweinberg") - (version "1.6.6") + (version "1.6.8") (source (origin (method url-fetch) (uri (cran-uri "HardyWeinberg" version)) (sha256 (base32 - "1qn1bbzfk4w3mqrzisshw5xx7x249sgmj6qdi39lkqb58a4mf4kh")))) + "0b6j1mkpr7ck2nr9fmpnsjdv29jc6vg4b91cg50skmcgky1j0zi7")))) (properties `((upstream-name . "HardyWeinberg"))) (build-system r-build-system) (propagated-inputs @@ -4186,14 +4191,14 @@ modeling for empirical income distributions.") (define-public r-vcd (package (name "r-vcd") - (version "1.4-7") + (version "1.4-8") (source (origin (method url-fetch) (uri (cran-uri "vcd" version)) (sha256 (base32 - "16aj688nhlcvdxzfsqh4s375v8f8vl8997dl8h1xg29b42nv52gc")))) + "030yyhpzsj4ivwrla7p9kgvmyjh6b8fr7czf678ykxjj64ccnvr3")))) (build-system r-build-system) (propagated-inputs `(("r-colorspace" ,r-colorspace) @@ -4232,14 +4237,14 @@ of Eigenmatrices} (JADE).") (define-public r-dtw (package (name "r-dtw") - (version "1.21-3") + (version "1.22-3") (source (origin (method url-fetch) (uri (cran-uri "dtw" version)) (sha256 (base32 - "02hyhx1sy5h3vzh9zixy18a7d47df4k5d0wyflcvlcbsbcl6p90s")))) + "004gm4mzgdzdj807j3bwqsv5lizmnmz5jq514bdjshhkysnzjz6z")))) (build-system r-build-system) (propagated-inputs `(("r-proxy" ,r-proxy))) (home-page "http://dtw.r-forge.r-project.org/") @@ -4522,14 +4527,14 @@ Markdown documents.") (define-public r-seriation (package (name "r-seriation") - (version "1.2-8") + (version "1.2-9") (source (origin (method url-fetch) (uri (cran-uri "seriation" version)) (sha256 (base32 - "1zbdxq0s5rc5v307b69fw9k52m0654ls7pf22lh35ggirig6lwsk")))) + "1glxn098ar1v96xlwp85kjxzfd1nyfzp2f82x5z3fm87yv57k4lb")))) (build-system r-build-system) (propagated-inputs `(("r-cluster" ,r-cluster) @@ -4556,13 +4561,13 @@ iVAT).") (define-public r-xfun (package (name "r-xfun") - (version "0.17") + (version "0.18") (source (origin (method url-fetch) (uri (cran-uri "xfun" version)) (sha256 - (base32 "1zd5qi1rrz3b1lpisapa2yscanz39ghaamf28g7aq3z9ai2a2ymj")))) + (base32 "0iqh9b0a5wlc4lmqf7r169h4m2xji5l1viwwi47qf094rl5r3ddr")))) (build-system r-build-system) ;; knitr itself depends on xfun #; @@ -4706,14 +4711,14 @@ terminals.") (define-public r-tinytex (package (name "r-tinytex") - (version "0.25") + (version "0.26") (source (origin (method url-fetch) (uri (cran-uri "tinytex" version)) (sha256 (base32 - "0zbhzxxjlkdj9byxyab477p7cnws5y87nyg989lkzarxdc7dglza")))) + "02b0v8ydbfspma3rgsdpkf2cm6jl9qm3l9jsrl0xng482b06bb0q")))) (build-system r-build-system) (propagated-inputs `(("r-xfun" ,r-xfun))) @@ -4774,22 +4779,44 @@ complementary pairs stability selection with improved error bounds arbitrary user specified variable selection approaches.") (license license:gpl2))) +(define-public r-rle + (package + (name "r-rle") + (version "0.9.2") + (source + (origin + (method url-fetch) + (uri (cran-uri "rle" version)) + (sha256 + (base32 + "0sagl0jggg40lihzy7pfq4593rfvc3b3f7g6ggi85s7n18qvwg40")))) + (properties `((upstream-name . "rle"))) + (build-system r-build-system) + (home-page "https://cran.r-project.org/web/packages/rle/") + (synopsis "Common functions for run-length encoded vectors") + (description + "This package provides common @code{base} and @code{stats} methods for +@code{rle} objects, aiming to make it possible to treat them transparently as +vectors.") + (license license:gpl3))) + (define-public r-statnet-common (package (name "r-statnet-common") - (version "4.3.0") + (version "4.4.1") (source (origin (method url-fetch) (uri (cran-uri "statnet.common" version)) (sha256 (base32 - "0ng90i0wm9wlyhjbnmnylc1bbqw396p1dr7f402dyry9x9ck6jl3")))) + "1z89an46xcl1d7dacj4irhk6pkajdz7v85b2347vczwdf622pksf")))) (properties `((upstream-name . "statnet.common"))) (build-system r-build-system) (propagated-inputs - `(("r-coda" ,r-coda))) + `(("r-coda" ,r-coda) + ("r-rle" ,r-rle))) (home-page "https://statnet.org") (synopsis "R scripts and utilities used by the Statnet software") (description "This package provides non-statistical utilities used by the @@ -5201,14 +5228,14 @@ interface.") (define-public r-trend (package (name "r-trend") - (version "1.1.3") + (version "1.1.4") (source (origin (method url-fetch) (uri (cran-uri "trend" version)) (sha256 (base32 - "0bj40acr1sc7vfxdcsdja3g28xsmrclmgb3n94p89gfjcgp8nv1d")))) + "1mr5g5gaxiqj6x83ngcbwwh57vhrhcz0x9dh0rmvs9y2ivk29ccs")))) (build-system r-build-system) (propagated-inputs `(("r-extradistr" ,r-extradistr))) @@ -5471,15 +5498,17 @@ Memorial-Sloan-Kettering Cancer Center (MSKCC).") (define-public r-import (package (name "r-import") - (version "1.1.0") + (version "1.2.0") (source (origin (method url-fetch) (uri (cran-uri "import" version)) (sha256 (base32 - "0blf9539rbfwcmw8zsb4k58slb4pdnc075v34vmyjw752fznhcji")))) + "018s0x224gqnv4cjfh0fwliyfg6ma9vslmwybrlizfsmqcc5wp37")))) (build-system r-build-system) + (native-inputs + `(("r-knitr" ,r-knitr))) (home-page "https://github.com/smbache/import") (synopsis "Import mechanism for R") (description @@ -6053,14 +6082,14 @@ additional external tools on any platform.") (define-public r-openxlsx (package (name "r-openxlsx") - (version "4.1.5") + (version "4.2.2") (source (origin (method url-fetch) (uri (cran-uri "openxlsx" version)) (sha256 (base32 - "0wkpa3wsd8rs0pib7cp67iv0s6jn99frcrw7clypqxmvvdwyb9kq")))) + "12sjarcmbdww6jmkcqy8c6id94zv3lwmm15ns1y0xj3ipr8qmphb")))) (build-system r-build-system) (propagated-inputs `(("r-rcpp" ,r-rcpp) @@ -6388,14 +6417,14 @@ Python to R they are converted back to R types.") (define-public r-bibtex (package (name "r-bibtex") - (version "0.4.2.2") + (version "0.4.2.3") (source (origin (method url-fetch) (uri (cran-uri "bibtex" version)) (sha256 (base32 - "140hkjzdp3033cvji861rd06z1ixgpnn4n5amygqsmhnixk8ff07")))) + "0vdwx6808r73pk15263f33bkqbfmb08d8jkmr4d7h4ml414ikbbv")))) (build-system r-build-system) (propagated-inputs `(("r-stringr" ,r-stringr))) (home-page "https://github.com/romainfrancois/bibtex") @@ -7126,14 +7155,14 @@ other add-on packages.") (define-public r-insight (package (name "r-insight") - (version "0.9.5") + (version "0.9.6") (source (origin (method url-fetch) (uri (cran-uri "insight" version)) (sha256 (base32 - "0853kq4j8kic8z2gh5mxfqkwxjs4bdphlajzyvxka7af4r04bfmi")))) + "15mws316qfbq3nn6gb7s0m0a6jk2zi056g43yqiw4gp2ar92wd0h")))) (build-system r-build-system) (native-inputs `(("r-knitr" ,r-knitr))) @@ -7154,14 +7183,14 @@ information are missing.") (define-public r-sjlabelled (package (name "r-sjlabelled") - (version "1.1.6") + (version "1.1.7") (source (origin (method url-fetch) (uri (cran-uri "sjlabelled" version)) (sha256 (base32 - "0xvb0yi7c7wiiqjbnbisyb2cjinm11i373jacfv1yzyc9cznzyzq")))) + "0d3fsjd2gxchv8mlx9l5pf8xvkmx4pgvizam83f3qss07bmvpzwg")))) (build-system r-build-system) (propagated-inputs `(("r-insight" ,r-insight))) @@ -7482,14 +7511,14 @@ Group (Non-)Overlap considerations.") (define-public r-deriv (package (name "r-deriv") - (version "4.0.1") + (version "4.1.0") (source (origin (method url-fetch) (uri (cran-uri "Deriv" version)) (sha256 (base32 - "16rq65x1xhxvqwn4p427divay3b9fgam2lxccxb8529adnrxmw6p")))) + "1n5d10g9qv4fvl8q0q6yc0mzdbba10jniid6k3br3bfqvdp2a4pq")))) (properties `((upstream-name . "Deriv"))) (build-system r-build-system) (home-page "https://cran.r-project.org/web/packages/Deriv") @@ -8916,14 +8945,14 @@ observation.") (define-public r-sandwich (package (name "r-sandwich") - (version "2.5-1") + (version "3.0-0") (source (origin (method url-fetch) (uri (cran-uri "sandwich" version)) (sha256 (base32 - "1mk685b9wq7k566pbml52rj96i5h6b3vf215k9picgmq296nzvyv")))) + "0afm6snak7r11dxyl3qirqdjah6d9pdv4afmxwam1nq9bqxyb3w2")))) (build-system r-build-system) (propagated-inputs `(("r-zoo" ,r-zoo))) @@ -8961,14 +8990,14 @@ packages maintained by Torsten Hothorn.") (define-public r-multcomp (package (name "r-multcomp") - (version "1.4-13") + (version "1.4-14") (source (origin (method url-fetch) (uri (cran-uri "multcomp" version)) (sha256 (base32 - "1nszi22rcc551yc75h9cdfkdqsxw1rz30vadazmpyzihp1bh63yk")))) + "14a55isy1sp745s109nirlk5fryy144cri6dl8y9d9wjhfxz336a")))) (build-system r-build-system) (propagated-inputs `(("r-codetools" ,r-codetools) @@ -8989,14 +9018,14 @@ Hothorn, Westfall, 2010, CRC Press).") (define-public r-emmeans (package (name "r-emmeans") - (version "1.5.0") + (version "1.5.1") (source (origin (method url-fetch) (uri (cran-uri "emmeans" version)) (sha256 (base32 - "09nap4aazpbsswqzk0d4kjngwd8sib222s31yd08sd1sqw432c6k")))) + "05z3vvykn56g50zhzsphdhfjzdw8g8xfindcas08hbhv5y7izhs8")))) (build-system r-build-system) (propagated-inputs `(("r-estimability" ,r-estimability) @@ -9309,14 +9338,14 @@ results using @code{ggplot2}.") (define-public r-effectsize (package (name "r-effectsize") - (version "0.3.2") + (version "0.3.3") (source (origin (method url-fetch) (uri (cran-uri "effectsize" version)) (sha256 (base32 - "0h9f260gb8707pcssf8dq7dakpq1ggkxr5kpbrbl8sn8h3qbvws9")))) + "00c9j6lc58ls1vrwlpzk3h1lgvxpkcrh7b4ym6kmy4fg4f08izp7")))) (properties `((upstream-name . "effectsize"))) (build-system r-build-system) (propagated-inputs @@ -9336,13 +9365,13 @@ conversion of indices such as Cohen's d, r, odds, etc.") (define-public r-sjplot (package (name "r-sjplot") - (version "2.8.4") + (version "2.8.5") (source (origin (method url-fetch) (uri (cran-uri "sjPlot" version)) (sha256 - (base32 "0b7k0mshkk8k26w11xbxkb5v0klhq279zn2xdz83cn8k791xkqyd")))) + (base32 "07fwa6ga9430irk68g9wcfpn9g24pf8qc2i127nrydm865y7ri24")))) (properties `((upstream-name . "sjPlot"))) (build-system r-build-system) (propagated-inputs @@ -9466,14 +9495,14 @@ terminals that do not support Unicode.") (define-public r-usethis (package (name "r-usethis") - (version "1.6.1") + (version "1.6.3") (source (origin (method url-fetch) (uri (cran-uri "usethis" version)) (sha256 (base32 - "0vwxsnq615mwc706a4a71gyy0hmvnllbh249gzm7vl3ym5cr0cv0")))) + "09lk04kycvf5x9ggrb6pwc7bx5mzqxwialm2w9vn1a0w0gh2gcfc")))) (build-system r-build-system) (propagated-inputs `(("r-cli" ,r-cli) @@ -9689,14 +9718,14 @@ users.") (define-public r-lsei (package (name "r-lsei") - (version "1.2-0.1") + (version "1.3-0") (source (origin (method url-fetch) (uri (cran-uri "lsei" version)) (sha256 (base32 - "1rvzdb33x9ykl5qfwxkps1iylxqzlf1qla3l88420nbq7pxp7m87")))) + "1dka0rigfw4vj809qma2dkiwjb3nw5635ynnba5cm299cn7hb2b2")))) (build-system r-build-system) (native-inputs `(("gfortran" ,gfortran))) @@ -9712,14 +9741,14 @@ problems into least squares ones first.") (define-public r-npsurv (package (name "r-npsurv") - (version "0.4-0.1") + (version "0.5-0") (source (origin (method url-fetch) (uri (cran-uri "npsurv" version)) (sha256 (base32 - "09nxibp93bp9v8qcx0gnazk7fkvyh0fq9vlgxl639m6ndr7fwp88")))) + "1ihxhb42cga1hssj2jv4ah0f4hlwsky899ij5261fzh1wxvdp1xw")))) (build-system r-build-system) (propagated-inputs `(("r-lsei" ,r-lsei))) @@ -9829,14 +9858,14 @@ analysing multivariate abundance data in community ecology.") (define-public r-afex (package (name "r-afex") - (version "0.27-2") + (version "0.28-0") (source (origin (method url-fetch) (uri (cran-uri "afex" version)) (sha256 (base32 - "0qsmcddy4449qjj3ajmqvdiqdkhkswmz5dqf150wxwq897p3bvf2")))) + "0c47bq2llzw2b4avhkxyhmf1m2zjh9jsjiw2kww9n1bhwqsyr4ci")))) (build-system r-build-system) (propagated-inputs `(("r-car" ,r-car) @@ -10411,14 +10440,14 @@ components).") (define-public r-fftwtools (package (name "r-fftwtools") - (version "0.9-8") + (version "0.9-9") (source (origin (method url-fetch) (uri (cran-uri "fftwtools" version)) (sha256 (base32 - "1nqvpzda281rxi1cmwajxxsn3sc3gz7scv8bvs5jm34kf36whha6")))) + "0h8lyl2i6zq16ir7xnfj9dhyivxvwikm8lml19s8s8jx95z3n9x9")))) (build-system r-build-system) (inputs `(("fftw" ,fftw))) (home-page "https://github.com/krahim/fftwtools") @@ -11377,14 +11406,14 @@ preparing, executing, and processing HTTP requests.") (define-public r-bigrquery (package (name "r-bigrquery") - (version "1.3.1") + (version "1.3.2") (source (origin (method url-fetch) (uri (cran-uri "bigrquery" version)) (sha256 (base32 - "0mq03sqv5lkyn3dlxvyd6lqqwnryfdaqh05pjvngzp194fxmd9cy")))) + "16whccv7f94vf57dvbbrhdskz3nnbmpa11a14kp7aynckldlfy0v")))) (build-system r-build-system) (propagated-inputs `(("r-assertthat" ,r-assertthat) @@ -11410,14 +11439,14 @@ preparing, executing, and processing HTTP requests.") (define-public r-gmp (package (name "r-gmp") - (version "0.6-0") + (version "0.6-1") (source (origin (method url-fetch) (uri (cran-uri "gmp" version)) (sha256 (base32 - "1c9vpr6j6h5f6dm9l535nscl66rvr8sba5az2kswjhmzwb9xpjxc")))) + "11rl7qmfrpp1974f0vzsi3zjyx147wlb82ydxak2b60khfvhrn90")))) (build-system r-build-system) (arguments '(#:phases @@ -11935,13 +11964,13 @@ Differences with other sparse matrix packages are: (define-public r-fields (package (name "r-fields") - (version "11.4") + (version "11.5") (source (origin (method url-fetch) (uri (cran-uri "fields" version)) (sha256 - (base32 "0x8hbl0rn7gnhn7w45wd757g9in27884qr6vy30xrk150qaq941y")))) + (base32 "1mgg5l6w4yvz7cccgfz3h19k11ng1s1hy26rl2h215gnfb24mnga")))) (build-system r-build-system) (propagated-inputs `(("r-maps" ,r-maps) @@ -11960,14 +11989,14 @@ covariance functions for large data sets.") (define-public r-spatialextremes (package (name "r-spatialextremes") - (version "2.0-8") + (version "2.0-9") (source (origin (method url-fetch) (uri (cran-uri "SpatialExtremes" version)) (sha256 (base32 - "0r2byz5xxc46zqnigdax28q7446ibmzmsmi10lmm2hdks3ml6sl3")))) + "1mhn1c8n3bmgf0fjyac3wji4790zswzkqliqcv3n8kv9806crb0y")))) (properties `((upstream-name . "SpatialExtremes"))) (build-system r-build-system) @@ -12384,14 +12413,14 @@ subsetting.") (define-public r-globals (package (name "r-globals") - (version "0.12.5") + (version "0.13.0") (source (origin (method url-fetch) (uri (cran-uri "globals" version)) (sha256 (base32 - "1ha8iasgijp4q3v2b0b17y1wh7cd3nvzd9b03w49qm2bidkaf68m")))) + "0gqh7dbd38wqyjy9qm85v5k60vld97pyc46wf4xkgi4mr7y0ixg3")))) (build-system r-build-system) (propagated-inputs `(("r-codetools" ,r-codetools))) @@ -12408,14 +12437,14 @@ them in distributed compute environments.") (define-public r-future (package (name "r-future") - (version "1.18.0") + (version "1.19.1") (source (origin (method url-fetch) (uri (cran-uri "future" version)) (sha256 (base32 - "01fp8kgjf0k6c83q1w3dy9z90g72cc9d0004d1qw6n1j65nwxg4f")))) + "12f483h7g172ygafbg7h43vykv0f7xz9miwqf5q8dyv7gpgqi5fl")))) (build-system r-build-system) (propagated-inputs `(("r-digest" ,r-digest) @@ -12887,14 +12916,14 @@ to easily call your own custom JavaScript functions from R.") (define-public r-colourpicker (package (name "r-colourpicker") - (version "1.0") + (version "1.1.0") (source (origin (method url-fetch) (uri (cran-uri "colourpicker" version)) (sha256 (base32 - "0z3v2083g7kwdp21x9s2n1crfh24agpdq3yxkcdzc2awn2pwpnpi")))) + "1qjispj7i12m02js5cm5xlgn5lyff0kc5ybz6lbknz8q5lkbdyrd")))) (build-system r-build-system) (arguments `(#:modules ((guix build utils) @@ -12935,7 +12964,8 @@ to easily call your own custom JavaScript functions from R.") ("r-shiny" ,r-shiny) ("r-shinyjs" ,r-shinyjs))) (native-inputs - `(("uglify-js" ,uglify-js) + `(("r-knitr" ,r-knitr) + ("uglify-js" ,uglify-js) ("js-jquery" ,(origin (method url-fetch) @@ -14027,13 +14057,13 @@ also provided to illustrate various methods.") (define-public r-pegas (package (name "r-pegas") - (version "0.13") + (version "0.14") (source (origin (method url-fetch) (uri (cran-uri "pegas" version)) (sha256 - (base32 "002i7s4g0nhnq0v05gs0yssqiyhpq2f7rw2rhn31hsbgxc86frvy")))) + (base32 "0lr06gajzdanj8ax91kgpxsj863m367v2s1z5gnxps3999n0xybx")))) (build-system r-build-system) (propagated-inputs `(("r-adegenet" ,r-adegenet) @@ -14791,20 +14821,21 @@ the XKCD web comic.") (define-public r-msigdbr (package (name "r-msigdbr") - (version "7.1.1") + (version "7.2.1") (source (origin (method url-fetch) (uri (cran-uri "msigdbr" version)) (sha256 (base32 - "0jvi49qa7616s58p0rx66pcw7h12rc8kgcg9225jk7pc3934hnzh")))) + "1rc2p9vw57pn4prmfgay4w18qd53ggq7wxfsi9kp7w25ciip1dq1")))) (build-system r-build-system) (propagated-inputs `(("r-dplyr" ,r-dplyr) ("r-magrittr" ,r-magrittr) ("r-rlang" ,r-rlang) - ("r-tibble" ,r-tibble))) + ("r-tibble" ,r-tibble) + ("r-tidyselect" ,r-tidyselect))) (native-inputs `(("r-knitr" ,r-knitr))) (home-page "https://github.com/igordot/msigdbr") @@ -15181,14 +15212,14 @@ discriminant analysis for the purpose of classifying high dimensional data.") (define-public r-ggvis (package (name "r-ggvis") - (version "0.4.5") + (version "0.4.6") (source (origin (method url-fetch) (uri (cran-uri "ggvis" version)) (sha256 (base32 - "091i9f17912j8qcyxppjgwzjnyqj7769ixs9d2gjg6f2clskqdw2")))) + "1k40mkfxj66qvwbsp849maihv6vxkdprhhzjkwffwn0lwl78lsz1")))) (build-system r-build-system) (propagated-inputs `(("r-assertthat" ,r-assertthat) @@ -15718,17 +15749,18 @@ code edited with @code{RStudio IDE}, @code{Emacs} and @code{Vim}.") (define-public r-sctransform (package (name "r-sctransform") - (version "0.2.1") + (version "0.3") (source (origin (method url-fetch) (uri (cran-uri "sctransform" version)) (sha256 (base32 - "07v3lzccsrkh1glfxd1q20r8f8gl9ls5az0s1dvxm4vcls0hlhyn")))) + "1vyjxzghfvw57pwncvkfg3lbcsqfdsiplh1h4vscxpnd3872nrq3")))) (build-system r-build-system) (propagated-inputs - `(("r-future-apply" ,r-future-apply) + `(("r-future" ,r-future) + ("r-future-apply" ,r-future-apply) ("r-ggplot2" ,r-ggplot2) ("r-gridextra" ,r-gridextra) ("r-mass" ,r-mass) @@ -16137,14 +16169,14 @@ includes data sets from oceanography.") (define-public r-ggfortify (package (name "r-ggfortify") - (version "0.4.10") + (version "0.4.11") (source (origin (method url-fetch) (uri (cran-uri "ggfortify" version)) (sha256 (base32 - "0wmcwp63h90v3f00ixszvis4z28im621jickvc0wgi6qvjvnayq0")))) + "1wfm7l9bz6msh7rflgfv9dgbxh1ikz2ay0v7sgk9nkc24y6lhbpk")))) (build-system r-build-system) (propagated-inputs `(("r-dplyr" ,r-dplyr) @@ -16621,13 +16653,13 @@ function and interfaces to external frameworks.") (define-public r-covr (package (name "r-covr") - (version "3.5.0") + (version "3.5.1") (source (origin (method url-fetch) (uri (cran-uri "covr" version)) (sha256 - (base32 "1pvr95h7jg9hqq1qq1cccy323pkxldrwafl08151cc410499k4fb")))) + (base32 "0v5cv3cw2kpdr6wxmkbd3wclavr17zipypdcb10hhmpa4cvgqk55")))) (properties `((upstream-name . "covr"))) (build-system r-build-system) (propagated-inputs @@ -16654,14 +16686,14 @@ both R code and compiled C/C++/FORTRAN code.") (define-public r-systemfonts (package (name "r-systemfonts") - (version "0.3.1") + (version "0.3.2") (source (origin (method url-fetch) (uri (cran-uri "systemfonts" version)) (sha256 (base32 - "0ldxgcayyisp2gcbv4xw9zpb48bp4czi8016kq5nqdqhv1qb3sz0")))) + "12hdvv66kkd3b4rs82blc3c4ifz2dw1048sqpkbz6vkk1zqpc53x")))) (properties `((upstream-name . "systemfonts"))) (build-system r-build-system) (propagated-inputs @@ -16802,14 +16834,14 @@ in pipelines.") (define-public r-parameters (package (name "r-parameters") - (version "0.8.5") + (version "0.8.6") (source (origin (method url-fetch) (uri (cran-uri "parameters" version)) (sha256 (base32 - "1vax5p1znq2ddbks2i614hbrnn2x6x71942xx49p813qk8dh284l")))) + "0z4qy62pxiwnsgi77ydymlc12ss9p9gbqljik2h0rwlmkpmk016w")))) (properties `((upstream-name . "parameters"))) (build-system r-build-system) (propagated-inputs @@ -16831,18 +16863,18 @@ effect size.") (define-public r-rgdal (package (name "r-rgdal") - (version "1.5-16") + (version "1.5-17") (source (origin (method url-fetch) (uri (cran-uri "rgdal" version)) (sha256 - (base32 "0rwlsafqxgqflfid4ciaa9qz3f75fgw8hilhaqj558gdxg8bzigp")))) + (base32 "16vk3a8azbqhv4m598i78hs9m1nlfcls6lx011v0wgiw6ksq64zw")))) (properties `((upstream-name . "rgdal"))) (build-system r-build-system) (inputs `(("gdal" ,gdal) - ("proj.4" ,proj.4) + ("proj" ,proj) ("zlib" ,zlib))) (propagated-inputs `(("r-sp" ,r-sp))) @@ -17085,14 +17117,14 @@ structural data.") (define-public r-bios2cor (package (name "r-bios2cor") - (version "2.1") + (version "2.2") (source (origin (method url-fetch) (uri (cran-uri "Bios2cor" version)) (sha256 (base32 - "04wk1cjrrxhpv1kdhd67r1qvjv268xxi0z0r105wy912110z9m6x")))) + "1wkj9vr33m9jilidil9jpw5rzr3pf7gkimxdvch22ks4bgkx7l1w")))) (properties `((upstream-name . "Bios2cor"))) (build-system r-build-system) (propagated-inputs @@ -17990,14 +18022,14 @@ See e.g. Gentle (2003) @url{doi:10.1007/b97336}.") (define-public r-lhs (package (name "r-lhs") - (version "1.0.2") + (version "1.1.1") (source (origin (method url-fetch) (uri (cran-uri "lhs" version)) (sha256 (base32 - "0n0i1hr9gmc0hfcs2cvpjvdfgm6k26rhcq3q22r8ic0gfj953572")))) + "1p4h03qlijs2a59wfd4rlvdlb9i87pw2zm8xsjd6yzz8vlm9yglh")))) (properties `((upstream-name . "lhs"))) (build-system r-build-system) (propagated-inputs `(("r-rcpp" ,r-rcpp))) @@ -18013,14 +18045,14 @@ Latin Hypercube Samples.") (define-public r-acebayes (package (name "r-acebayes") - (version "1.9") + (version "1.10") (source (origin (method url-fetch) (uri (cran-uri "acebayes" version)) (sha256 (base32 - "1imfwm1vpbb24vfmfn1nljhmaz8429mwjihw34892p387s8h7xz2")))) + "11bffz430gdfdaxjx3simig66vhynmx6l1ylac4q2shcmj52nx73")))) (properties `((upstream-name . "acebayes"))) (build-system r-build-system) (propagated-inputs @@ -19869,14 +19901,14 @@ generation for the Poisson binomial distribution.") (define-public r-diagram (package (name "r-diagram") - (version "1.6.4") + (version "1.6.5") (source (origin (method url-fetch) (uri (cran-uri "diagram" version)) (sha256 (base32 - "0f6ffprn5k0ir1s7m9s7izc64aa17r3gnygagz5bihrlsvawaavw")))) + "1r3lyl0h7mk9cfg8smr3jydfkjdawaphnxibkxfjqa7029vkxh79")))) (properties `((upstream-name . "diagram"))) (build-system r-build-system) (propagated-inputs @@ -20447,14 +20479,14 @@ Norwegian, Portuguese, Romanian, Russian, Spanish, Swedish and Turkish.") (define-public r-quanteda (package (name "r-quanteda") - (version "2.1.1") + (version "2.1.2") (source (origin (method url-fetch) (uri (cran-uri "quanteda" version)) (sha256 (base32 - "1wlrd7g2b459pnkqhihxhn74f37py1c9pxrdzp5xzp4mnbdxcsj8")))) + "13rjwgmg5v1dbryrs9ifyy76s5ib6wrbrm2y5af44vhf1h6p9cvy")))) (properties `((upstream-name . "quanteda"))) (build-system r-build-system) (propagated-inputs @@ -20523,14 +20555,14 @@ Gibbs sampling by Xuan-Hieu Phan and co-authors.") (define-public r-stm (package (name "r-stm") - (version "1.3.5") + (version "1.3.6") (source (origin (method url-fetch) (uri (cran-uri "stm" version)) (sha256 (base32 - "1yyfxaxqc6yq0yq68zhdnhpwpvsyp71dlmivn7zxixfmp932s6cn")))) + "0qwq4nin2n9fjd06852r8k7arvcgh46kcfb3lm21swgx6j8bgrhb")))) (properties `((upstream-name . "stm"))) (build-system r-build-system) (propagated-inputs @@ -20732,14 +20764,14 @@ least squares.") (define-public r-regsem (package (name "r-regsem") - (version "1.5.2") + (version "1.6.2") (source (origin (method url-fetch) (uri (cran-uri "regsem" version)) (sha256 (base32 - "0ch057010xfsw0nqcsarzakdbiplvxaldyqlbbacspqs65ax1yk7")))) + "14nrzyrkrijdrr4jwkri5zra2wh36w68wy6xs600l2z1633h2lmn")))) (properties `((upstream-name . "regsem"))) (build-system r-build-system) (propagated-inputs @@ -20747,6 +20779,8 @@ least squares.") ("r-rcpp" ,r-rcpp) ("r-rcpparmadillo" ,r-rcpparmadillo) ("r-rsolnp" ,r-rsolnp))) + (native-inputs + `(("r-knitr" ,r-knitr))) (home-page "https://cran.r-project.org/package=regsem") (synopsis "Regularized structural equation modeling") (description @@ -20801,14 +20835,14 @@ and analyze Stan models.") (define-public r-rpf (package (name "r-rpf") - (version "1.0.4") + (version "1.0.5") (source (origin (method url-fetch) (uri (cran-uri "rpf" version)) (sha256 (base32 - "17crcgsbcsh0c00n7bgdqfnd7n1vzz7drfxjs7d18253yl5x44pl")))) + "0kz7i7g3l16irz6bxgnkxdmmd931m1fk6rl72dvs21ir5brr010l")))) (properties `((upstream-name . "rpf"))) (build-system r-build-system) (propagated-inputs @@ -22136,14 +22170,14 @@ is also implemented here.") (define-public r-aws (package (name "r-aws") - (version "2.4-3") + (version "2.5") (source (origin (method url-fetch) (uri (cran-uri "aws" version)) (sha256 (base32 - "0ccm8ffjf8bylhfr64j9wzi49hzigz4bs172pvkb0bi4d5vdr0l5")))) + "1mwg1q7l4a07g5aa9c6kh3fpl9lakk01pbzlk7ixbpy12yfvj9nm")))) (properties `((upstream-name . "aws"))) (build-system r-build-system) @@ -22300,21 +22334,22 @@ infinite-precision rational arithmetic.") (define-public r-rxnat (package (name "r-rxnat") - (version "1.0.12") + (version "1.0.14") (source (origin (method url-fetch) (uri (cran-uri "Rxnat" version)) (sha256 (base32 - "06w99b5lvpycykzlga6grw33zkajwbb04s89s37wy9zxy42vc4cb")))) + "00fl68pa0c2vy4xlny67pn41lzgm7b97wgg3dwm6z35izca62l11")))) (properties `((upstream-name . "Rxnat"))) (build-system r-build-system) (propagated-inputs `(("r-dplyr" ,r-dplyr) ("r-httr" ,r-httr) - ("r-rcurl" ,r-rcurl))) + ("r-rcurl" ,r-rcurl) + ("r-tibble" ,r-tibble))) (native-inputs `(("r-knitr" ,r-knitr))) (home-page "https://cran.r-project.org/web/packages/Rxnat/") @@ -22704,14 +22739,14 @@ incremented as outlined at @url{http://semver.org}.") (define-public r-binman (package (name "r-binman") - (version "0.1.1") + (version "0.1.2") (source (origin (method url-fetch) (uri (cran-uri "binman" version)) (sha256 (base32 - "0hm0h285p4v9lhrqjy8s22f1s1vmfpfla5iaycpj8vw3qb3632az")))) + "00l7m98h41r67gf0qxqis3vx63j7wylnk9vlgcyk41szkrz8ikkc")))) (properties `((upstream-name . "binman"))) (build-system r-build-system) (propagated-inputs @@ -23056,14 +23091,14 @@ formal inference.") (define-public r-gaston (package (name "r-gaston") - (version "1.5.6") + (version "1.5.7") (source (origin (method url-fetch) (uri (cran-uri "gaston" version)) (sha256 (base32 - "1bx6iqfjb9lf3vn0z7v8wjv9m7issvqsnymm4qsgl3622s6qz6rg")))) + "14z94dpln4dvgrv2w7w9ik7h6rpvbf02qhq1hqzx8c2cndzxr21i")))) (properties `((upstream-name . "gaston"))) (build-system r-build-system) (inputs `(("zlib" ,zlib))) @@ -23084,14 +23119,14 @@ for linear mixed models (AIREML).") (define-public r-cpp11 (package (name "r-cpp11") - (version "0.2.1") + (version "0.2.2") (source (origin (method url-fetch) (uri (cran-uri "cpp11" version)) (sha256 (base32 - "1113y61lj4cg1d2yjavdx9zih5rzb4pnxmj5v3sr4bhzlxz2scda")))) + "1b1h7kjl3xrd4nfly7wd6v8mbyancm632r4k37pafs8xi6cqm848")))) (properties `((upstream-name . "cpp11"))) (build-system r-build-system) (native-inputs `(("r-knitr" ,r-knitr))) @@ -23662,14 +23697,14 @@ more.") (define-public r-workflows (package (name "r-workflows") - (version "0.1.3") + (version "0.2.0") (source (origin (method url-fetch) (uri (cran-uri "workflows" version)) (sha256 (base32 - "1d5njd1xdl8kghlbar4acgl9hxq83p6k7yks592cvakmcz7f853m")))) + "1mj0ibl6myzw5vl5n4gcfy7fz8wd1755kp8sdy18isxg8h5h23ya")))) (properties `((upstream-name . "workflows"))) (build-system r-build-system) (propagated-inputs @@ -23679,7 +23714,8 @@ more.") ("r-glue" ,r-glue) ("r-hardhat" ,r-hardhat) ("r-parsnip" ,r-parsnip) - ("r-rlang" ,r-rlang))) + ("r-rlang" ,r-rlang) + ("r-tidyselect" ,r-tidyselect))) (native-inputs `(("r-knitr" ,r-knitr))) (home-page "https://github.com/tidymodels/workflows") @@ -23754,25 +23790,81 @@ to a data set such as confusion matrices, class probability curve summaries, and regression metrics (e.g., RMSE).") (license license:gpl2))) +(define-public r-warp + (package + (name "r-warp") + (version "0.1.0") + (source + (origin + (method url-fetch) + (uri (cran-uri "warp" version)) + (sha256 + (base32 + "16bmym91h0sbbh4iqasqs0f4kp3jqlm3sqgc356mznhxwnsm8dm2")))) + (properties `((upstream-name . "warp"))) + (build-system r-build-system) + (native-inputs `(("r-knitr" ,r-knitr))) + (home-page "https://github.com/DavisVaughan/warp") + (synopsis "Group dates") + (description + "This package provides tooling to group dates by a variety of periods +including: yearly, monthly, by second, by week of the month, and more. The +groups are defined in such a way that they also represent the distance between +dates in terms of the period. This extracts valuable information that can be +used in further calculations that rely on a specific temporal spacing between +observations.") + (license license:expat))) + +(define-public r-slider + (package + (name "r-slider") + (version "0.1.5") + (source + (origin + (method url-fetch) + (uri (cran-uri "slider" version)) + (sha256 + (base32 + "1x4jwfxam4czfkb1s5qds5krfw1h2p5a4rh6f5z4yvhsv0d81xck")))) + (properties `((upstream-name . "slider"))) + (build-system r-build-system) + (propagated-inputs + `(("r-glue" ,r-glue) + ("r-rlang" ,r-rlang) + ("r-vctrs" ,r-vctrs) + ("r-warp" ,r-warp))) + (native-inputs `(("r-knitr" ,r-knitr))) + (home-page "https://github.com/DavisVaughan/slider") + (synopsis "Sliding window functions") + (description + "This package provides type-stable rolling window functions over any R +data type. Cumulative and expanding windows are also supported. For more +advanced usage, an index can be used as a secondary vector that defines how +sliding windows are to be created.") + (license license:expat))) + (define-public r-rsample (package (name "r-rsample") - (version "0.0.7") + (version "0.0.8") (source (origin (method url-fetch) (uri (cran-uri "rsample" version)) (sha256 (base32 - "0s6hgq0rcv3ianyidq3n9z34y5ww51gaggqkwmwns9yyxmwfjcm8")))) + "1psmxk16d4bz1v05x0gb9hn4brkdjxw8hjbxmj62snichnix3q3i")))) (properties `((upstream-name . "rsample"))) (build-system r-build-system) (propagated-inputs `(("r-dplyr" ,r-dplyr) + ("r-ellipsis" ,r-ellipsis) ("r-furrr" ,r-furrr) ("r-generics" ,r-generics) + ("r-modeldata" ,r-modeldata) ("r-purrr" ,r-purrr) ("r-rlang" ,r-rlang) + ("r-slider" ,r-slider) ("r-tibble" ,r-tibble) ("r-tidyr" ,r-tidyr) ("r-tidyselect" ,r-tidyselect) @@ -23809,14 +23901,14 @@ Design} (SFD) and to test their quality.") (define-public r-dials (package (name "r-dials") - (version "0.0.8") + (version "0.0.9") (source (origin (method url-fetch) (uri (cran-uri "dials" version)) (sha256 (base32 - "0jxmlcy20y57chflx91fqz6c4pbdckzr7jirq4s72vp723avrr4p")))) + "0g9wj2py4wz703rh4p7hk8qxqnkm7zyrypv4qz4vaqziazjsmxks")))) (properties `((upstream-name . "dials"))) (build-system r-build-system) (propagated-inputs @@ -23921,14 +24013,14 @@ models without involving a test set.") (define-public r-tidypredict (package (name "r-tidypredict") - (version "0.4.6") + (version "0.4.7") (source (origin (method url-fetch) (uri (cran-uri "tidypredict" version)) (sha256 (base32 - "1fx1nr8fry3nwy2391g26zkqakdf8f3j7zyrihbc0qhscvbdskiy")))) + "0z0wr0ssl1h0smr9431cy1ik5kxfy1nvkdcyyq9c0355h828hybh")))) (properties `((upstream-name . "tidypredict"))) (build-system r-build-system) (propagated-inputs @@ -23937,7 +24029,9 @@ models without involving a test set.") ("r-knitr" ,r-knitr) ("r-purrr" ,r-purrr) ("r-rlang" ,r-rlang) - ("r-tibble" ,r-tibble))) + ("r-stringr" ,r-stringr) + ("r-tibble" ,r-tibble) + ("r-tidyr" ,r-tidyr))) (native-inputs `(("r-knitr" ,r-knitr))) (home-page "https://tidypredict.tidymodels.org") @@ -24043,14 +24137,14 @@ vignettes in all common formats.") (define-public r-tidytext (package (name "r-tidytext") - (version "0.2.5") + (version "0.2.6") (source (origin (method url-fetch) (uri (cran-uri "tidytext" version)) (sha256 (base32 - "0kwbpffdnqrb6hgrrmrfnx890imbzvp5bs6sj1k72if28qijarm5")))) + "0xmjkab7p13ncfglf3a9hvndf8fh96mmxw3l7hcpbnaq9qkiwk29")))) (properties `((upstream-name . "tidytext"))) (build-system r-build-system) (propagated-inputs @@ -24355,13 +24449,13 @@ as allowing spectra with different resolutions.") (define-public r-seurat (package (name "r-seurat") - (version "3.2.1") + (version "3.2.2") (source (origin (method url-fetch) (uri (cran-uri "Seurat" version)) (sha256 (base32 - "0jipc4xpmx56jzc31w6nsl77ah8x8wq7jclg2mxhjql4ixkwmz54")))) + "048vnj0c3mrwhr6yq3jqhgnkg68w99nj1ccsmgnd8rl694w26spj")))) (properties `((upstream-name . "Seurat"))) (build-system r-build-system) (propagated-inputs |