diff options
Diffstat (limited to 'gnu/packages/cran.scm')
| -rw-r--r-- | gnu/packages/cran.scm | 1517 |
1 files changed, 958 insertions, 559 deletions
diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index 23645faa8a..0299e0041e 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -35,6 +35,7 @@ ;;; Copyright © 2020 Aniket Patil <aniket112.patil@gmail.com> ;;; Copyright © 2021 Marcel Schilling <marcel.schilling@uni-luebeck.de> ;;; Copyright © 2021 Guillaume Le Vaillant <glv@posteo.net> +;;; Copyright © 2022 Navid Afkhami <navid.afkhami@mdc-berlin.de> ;;; ;;; This file is part of GNU Guix. ;;; @@ -112,6 +113,53 @@ #:use-module (gnu packages xml) #:use-module (gnu packages xorg)) +(define-public r-afpt + (package + (name "r-afpt") + (version "1.1.0.1") + (source (origin + (method url-fetch) + (uri (cran-uri "afpt" version)) + (sha256 + (base32 + "0cg5cdm9nl1hs6f3j0ljpw4bkqvh3ksyj615b9nnbqs5k28lyds9")))) + (properties `((upstream-name . "afpt"))) + (build-system r-build-system) + (native-inputs (list r-knitr)) + (home-page "https://github.com/MarcoKlH/afpt-r/") + (synopsis "Tools for modelling of animal flight performance") + (description + "This package allows estimation and modelling of flight costs in animal +(vertebrate) flight, implementing the aerodynamic power model. Flight +performance is estimated based on basic morphological measurements such as +body mass, wingspan and wing area. @code{Afpt} can be used to make +predictions on how animals should adjust their flight behaviour and wingbeat +kinematics to varying flight conditions.") + (license license:gpl3+))) + +(define-public r-aod + (package + (name "r-aod") + (version "1.3.2") + (source + (origin + (method url-fetch) + (uri (cran-uri "aod" version)) + (sha256 + (base32 "0p2i536s0aa54rah1l465g77k2ldn6jm6s25y9vc06mk29xvx1cv")))) + (properties `((upstream-name . "aod"))) + (build-system r-build-system) + (home-page "https://cran.r-project.org/package=aod") + (synopsis "Analysis of overdispersed data") + (description + "This package provides a set of functions to analyze overdispersed counts +or proportions. Most of the methods are already available elsewhere but are +scattered in different packages. The proposed functions should be considered +as complements to more sophisticated methods such as @dfn{generalized +estimating equations} (GEE) or @dfn{generalized linear mixed effect +models} (GLMM).") + (license license:gpl2+))) + (define-public r-brio (package (name "r-brio") @@ -207,14 +255,14 @@ etc.") (define-public r-datawizard (package (name "r-datawizard") - (version "0.3.0") + (version "0.4.1") (source (origin (method url-fetch) (uri (cran-uri "datawizard" version)) (sha256 (base32 - "1jmrkfymh66d0n4256hamvrbqipfl3bl05q618z4flmq2byifibs")))) + "09lyh1awm2rplfzgwbdw4iy76mbaqwjd4hwlrsgvxj9pwdnjs4cx")))) (properties `((upstream-name . "datawizard"))) (build-system r-build-system) (propagated-inputs @@ -229,6 +277,35 @@ clean, transform, and prepare your data for analysis. It also forms the data wrangling backend for the packages in the @code{easystats} ecosystem.") (license license:gpl3))) +(define-public r-dbscan + (package + (name "r-dbscan") + (version "1.1-10") + (source + (origin + (method url-fetch) + (uri (cran-uri "dbscan" version)) + (sha256 + (base32 "1h8x1v9kk5zmw5qd575cyr16yz8l226lsaq71n079l4i8crcrzg1")))) + (properties `((upstream-name . "dbscan"))) + (build-system r-build-system) + (propagated-inputs (list r-rcpp)) + (native-inputs (list r-knitr)) + (home-page "https://github.com/mhahsler/dbscan") + (synopsis "Density-based spatial clustering of applications with noise") + (description + "This package provides a fast reimplementation of several density-based +algorithms of the DBSCAN family. It includes the clustering algorithms DBSCAN +(density-based spatial clustering of applications with noise) and +@dfn{hierarchical DBSCAN} (HDBSCAN), the ordering algorithm @dfn{ordering +points to identify the clustering structure} (OPTICS), shared nearest neighbor +clustering, and the outlier detection algorithms @dfn{local outlier +factor} (LOF) and @dfn{global-local outlier score from hierarchies} (GLOSH). +The implementations use the kd-tree data structure for faster k-nearest +neighbor search. An R interface to fast kNN and fixed-radius NN search is +also provided.") + (license license:gpl2+))) + (define-public r-diffobj (package (name "r-diffobj") @@ -270,6 +347,29 @@ visualization of their differences.") (description "This package implements Dirichlet regression models.") (license license:gpl2+))) +(define-public r-dixontest + (package + (name "r-dixontest") + (version "1.0.3") + (source + (origin + (method url-fetch) + (uri (cran-uri "dixonTest" version)) + (sha256 + (base32 "1a3yc30g5rbb0jhm2b0iir5i1dy4jyl67spkhx4yysg4snz131wv")))) + (properties `((upstream-name . "dixonTest"))) + (build-system r-build-system) + (native-inputs (list gfortran)) + (home-page "https://cran.r-project.org/package=dixonTest") + (synopsis "Dixon's ratio test for outlier detection") + (description + "For outlier detection in small and normally distributed samples the ratio +test of Dixon (Q-test) can be used. Density, distribution function, quantile +function and random generation for Dixon's ratio statistics are provided as +wrapper functions. The core applies McBane's Fortran functions that use +Gaussian quadrature for a numerical solution.") + (license license:gpl3))) + (define-public r-emdist (package (name "r-emdist") @@ -325,6 +425,61 @@ Distance (EMD).") (description "This package lets you manage Google Drive files from R.") (license license:expat))) +(define-public r-googlevis + (package + (name "r-googlevis") + (version "0.7.0") + (source + (origin + (method url-fetch) + (uri (cran-uri "googleVis" version)) + (sha256 + (base32 "1s82xcs6zrlmnhay764bspzwvabfyi35nq6fwdrrk3v79q13c5jz")))) + (properties `((upstream-name . "googleVis"))) + (build-system r-build-system) + (propagated-inputs (list r-jsonlite)) + (native-inputs (list r-knitr)) + (home-page "https://mages.github.io/googleVis/") + (synopsis "R interface to Google Charts") + (description + "The @code{googleVis} package provides an interface between R and the Google +Charts API. Google Charts offer interactive charts which can be embedded into +web pages. The functions of the @code{googleVis} package allow the user to +visualise data stored in R data frames with Google Charts without uploading +the data to Google. The output of a @code{googleVis} function is HTML code +that contains the data and references to JavaScript functions hosted by +Google. @code{googleVis} makes use of the internal R HTTP server to display +the output locally.") + (license license:gpl2+))) + +(define-public r-guix-install + (package + (name "r-guix-install") + (version "1.0.0") + (source + (origin + (method url-fetch) + (uri (cran-uri "guix.install" version)) + (sha256 + (base32 "0s3wb5781yc43c9zwrn7i87zcbrlx7xr0ms0v9hvgs7qsv02id9j")))) + (properties `((upstream-name . "guix.install"))) + (build-system r-build-system) + (propagated-inputs (list r-runit)) + (home-page "https://github.com/BIMSBbioinfo/guix.install") + (synopsis "Install R packages with GNU Guix") + (description + "This R package provides a single procedure @code{guix.install()}, which +allows users to install R packages via Guix right from within their running R +session. If the requested R package does not exist in Guix at this time, the +package and all its missing dependencies will be imported recursively and the +generated package definitions will be written to @file{~/.Rguix/packages.scm}. +This record of imported packages can be used later to reproduce the +environment, and to add the packages in question to a proper Guix channel (or +Guix itself). @code{guix.install()} not only supports installing packages +from CRAN, but also from Bioconductor or even arbitrary git or mercurial +repositories, replacing the need for installation via @code{devtools}.") + (license license:gpl3+))) + (define-public r-ids (package (name "r-ids") @@ -387,14 +542,14 @@ can read and write both the metadata and the cell data in a Sheet.") (define-public r-waldo (package (name "r-waldo") - (version "0.3.1") + (version "0.4.0") (source (origin (method url-fetch) (uri (cran-uri "waldo" version)) (sha256 (base32 - "16q1xjbl9g04l1r1x3nid9hmz1sa35q6j33bigdzh4y4zcd8qb7c")))) + "1aky28rn70l24s0sygl36267cf7hjzhchagsz26abfxwr7p8kvjp")))) (properties `((upstream-name . "waldo"))) (build-system r-build-system) (propagated-inputs @@ -550,14 +705,14 @@ similar rank-based tests for equal probability distributions due to Neuhauser (define-public r-v8 (package (name "r-v8") - (version "4.1.0") + (version "4.2.0") (source (origin (method url-fetch) (uri (cran-uri "V8" version)) (sha256 (base32 - "15ylzcxlhkba99cccw5rvhwhg9i4zcax2fhmr03w8g4fdhbd3n89")))) + "0hs7ajjw6y3q7mp7z00a9712y4cn6wgcnk5dbjbzlc6cfk4zsqkc")))) (properties `((upstream-name . "V8"))) (build-system r-build-system) (arguments @@ -659,16 +814,36 @@ size and can be easily tested locally before being sent to a remote.") the system clipboards.") (license license:gpl3))) +(define-public r-dlm + (package + (name "r-dlm") + (version "1.1-5") + (source + (origin + (method url-fetch) + (uri (cran-uri "dlm" version)) + (sha256 + (base32 "1aksm66sfa7ipl5xgs4j5giac7q2m744wjl40mva56xn6i674h4r")))) + (properties `((upstream-name . "dlm"))) + (build-system r-build-system) + (home-page "https://cran.r-project.org/package=dlm") + (synopsis "Bayesian and Likelihood Analysis of Dynamic Linear Models") + (description + "This package provides routines for Maximum likelihood, Kalman filtering +and smoothing, and Bayesian analysis of Normal linear State Space models, also +known as Dynamic Linear Models.") + (license license:gpl2+))) + (define-public r-zoo (package (name "r-zoo") - (version "1.8-9") + (version "1.8-10") (source (origin (method url-fetch) (uri (cran-uri "zoo" version)) (sha256 (base32 - "18vjywalpgzqyk66gajb8x1yp8avdaaf11ykynld9fd8cy82bgmp")))) + "0izd66dywq6qd62hdp64apncainrrb9mgmm19wf6a8jc03c858n9")))) (build-system r-build-system) (propagated-inputs (list r-lattice)) @@ -783,14 +958,14 @@ variables.") (define-public r-ggpp (package (name "r-ggpp") - (version "0.4.3") + (version "0.4.4") (source (origin (method url-fetch) (uri (cran-uri "ggpp" version)) (sha256 (base32 - "175mk5zcnhwr8hvs1567x0k0vmq7g2qnq250pnxlwnv1wpmvrqhz")))) + "0wcaczxjav5yg8h2197cf288mqk13p3iq675q0x0di9g8lnblvk1")))) (properties `((upstream-name . "ggpp"))) (build-system r-build-system) (propagated-inputs @@ -844,7 +1019,7 @@ variables.") (home-page "https://github.com/dynverse/lmds") (synopsis "Landmark multi-dimensional scaling") (description - "This package provides a fast dimensionality reduction method scaleable + "This package provides a fast dimensionality reduction method scalable to large numbers of samples. @dfn{Landmark Multi-Dimensional Scaling} (LMDS) is an extension of classical Torgerson MDS, but rather than calculating a complete distance matrix between all pairs of samples, only the distances @@ -874,13 +1049,13 @@ axis} (SMA), and @dfn{ranged major axis} (RMA).") (define-public r-ggpmisc (package (name "r-ggpmisc") - (version "0.4.5") + (version "0.4.6") (source (origin (method url-fetch) (uri (cran-uri "ggpmisc" version)) (sha256 (base32 - "036y3zhl9ndj5wlqy2nkp95vi7pjfpvf63ndsigramzad0fz0c98")))) + "1iq39rx4nj1lf37hnj4df0c7gbk9374d0mzcnhdr7aqpxaxgs3ys")))) (build-system r-build-system) (propagated-inputs (list r-dplyr @@ -1025,16 +1200,38 @@ higher.") @url{https://www.oenb.at/en/Statistics/User-Defined-Tables/webservice.html}.") (license license:gpl2+))) +(define-public r-orgmassspecr + (package + (name "r-orgmassspecr") + (version "0.5-3") + (source (origin + (method url-fetch) + (uri (cran-uri "OrgMassSpecR" version)) + (sha256 + (base32 + "1dx9d8rb1dfqyhyc26zhfnxiv3rz2ikvs2mwqnsrq3lsjs9dvyc8")))) + (properties `((upstream-name . "OrgMassSpecR"))) + (build-system r-build-system) + (native-inputs (list r-knitr)) + (home-page "http://OrgMassSpec.github.io/") + (synopsis "Organic or biological mass spectrometry data analysis") + (description + "This package @code{OrgMassSpecR} is an extension of the @code{R} +statistical computing language. It contains functions to assist with organic +or biological mass spectrometry data analysis. Mass spectral libraries are +available as companion packages.") + (license license:bsd-2))) + (define-public r-scales (package (name "r-scales") - (version "1.1.1") + (version "1.2.0") (source (origin (method url-fetch) (uri (cran-uri "scales" version)) (sha256 - (base32 "019ps0njjc0rzrjygqiyn8b9vp0c3c0jd56h1yi19wzi49jvdcj0")))) + (base32 "1pq2rrix6a5gsi8xw38viiydp1bsxxmcmyy7dv9q8gkb1qj50p8q")))) (build-system r-build-system) (propagated-inputs (list r-farver @@ -1042,6 +1239,7 @@ higher.") r-lifecycle r-munsell r-rcolorbrewer + r-rlang r-r6 r-viridislite)) (home-page "https://github.com/hadley/scales") @@ -1074,6 +1272,31 @@ consistent fashion. It seeks to combine functionality from lower level functions which can speed up workflow.") (license license:gpl2))) +(define-public r-paralleldist + (package + (name "r-paralleldist") + (version "0.2.6") + (source + (origin + (method url-fetch) + (uri (cran-uri "parallelDist" version)) + (sha256 + (base32 "01ly4hxwa64a0ya5gla8rvv72s9mcknsfznivjkh937pbjwb7iih")))) + (properties `((upstream-name . "parallelDist"))) + (build-system r-build-system) + (propagated-inputs (list r-rcpp r-rcpparmadillo r-rcppparallel)) + (home-page "https://github.com/alexeckert/parallelDist") + (synopsis "Parallel Distance Matrix Computation using multiple threads") + (description + "This package provides a fast parallelized alternative to R's native +@code{dist} function to calculate distance matrices for continuous, binary, +and multi-dimensional input matrices, which supports a broad variety of +predefined distance functions from other R packages, as well as user- defined +functions written in C++. For ease of use, the @code{parDist} function +extends the signature of the @code{dist} function and uses the same parameter +naming conventions as distance methods of existing R packages.") + (license license:gpl2+))) + (define-public r-pheatmap (package (name "r-pheatmap") @@ -1146,13 +1369,13 @@ with default R plot functions.") (define-public r-polychrome (package (name "r-polychrome") - (version "1.3.1") + (version "1.5.1") (source (origin (method url-fetch) (uri (cran-uri "Polychrome" version)) (sha256 - (base32 "044vbylgbqf0ccv4r15nmbw1vz0j95g67i6blw73hvbvbm6w5x4d")))) + (base32 "0hyi02m2jpdhk1ky6ihz6dv5pwqwjwk4csjim2qr8ywx8midmrvg")))) (properties `((upstream-name . "Polychrome"))) (build-system r-build-system) (propagated-inputs @@ -1298,13 +1521,13 @@ objects.") (define-public r-mboost (package (name "r-mboost") - (version "2.9-5") + (version "2.9-7") (source (origin (method url-fetch) (uri (cran-uri "mboost" version)) (sha256 (base32 - "0yg07fdd1sbjfhhxn1dqgph2vzqyq7l52cdk5iq2a2zy1vh176yg")))) + "01ln0vxbbx1fq77q17sx61si82lhfibbchsnf2yw9032cn8wnhh2")))) (build-system r-build-system) (propagated-inputs (list r-lattice @@ -1327,13 +1550,13 @@ high-dimensional data.") (define-public r-shadowtext (package (name "r-shadowtext") - (version "0.1.1") + (version "0.1.2") (source (origin (method url-fetch) (uri (cran-uri "shadowtext" version)) (sha256 (base32 - "01h0w3b02r8snjkx5sxkf2x8xm4gd0r8jm27xqz9cv6hgqfmh1pb")))) + "0zdfidrcnmxmfhngv86ppxrjmpmz9kl78l4yfah2lc5vgmrlwg15")))) (properties `((upstream-name . "shadowtext"))) (build-system r-build-system) (propagated-inputs @@ -1424,13 +1647,13 @@ read a protected key.") (define-public r-astsa (package (name "r-astsa") - (version "1.14") + (version "1.15") (source (origin (method url-fetch) (uri (cran-uri "astsa" version)) (sha256 - (base32 "09zx2q419p0b1c336ybh4i62v5dvn3sp39dxn5kwlrqchjj7f5z6")))) + (base32 "0mllsq0xdqkviyvs77lq565r1vznsj1qp9cnlj5p48k9v76d7arp")))) (properties `((upstream-name . "astsa"))) (build-system r-build-system) (home-page "https://github.com/nickpoison/astsa/") @@ -1447,14 +1670,14 @@ Analysis Approach Using R. Chapman-Hall, 2019, (define-public r-vegan (package (name "r-vegan") - (version "2.5-7") + (version "2.6-2") (source (origin (method url-fetch) (uri (cran-uri "vegan" version)) (sha256 (base32 - "0aj6m9l1vkh32sar6fyvq4p8j4h2f2f347w1300qnzgaa5lmhfz6")))) + "0nf0ny6jzfy135xiygzzkr0y55y8g27hrbk8c869plarr48d2xxb")))) (build-system r-build-system) (native-inputs (list r-knitr ; needed for vignettes @@ -1676,17 +1899,19 @@ mixture models.") (define-public r-readxl (package (name "r-readxl") - (version "1.3.1") + (version "1.4.0") (source (origin (method url-fetch) (uri (cran-uri "readxl" version)) (sha256 (base32 - "15mambxr8c7k2ikdfsl1w3vxvm54dsnk0cl1qvks6iig7rql3d14")))) + "1xwi4k5si48hwkgfc59icfmp9dzlvfri59k5fsgn96zp9713k4mb")))) (build-system r-build-system) (propagated-inputs - (list r-cellranger r-progress r-rcpp r-tibble)) + (list r-cellranger r-cpp11 r-progress r-tibble)) + (native-inputs + (list r-knitr)) (home-page "https://readxl.tidyverse.org") (synopsis "Read Excel files") (description @@ -1758,13 +1983,13 @@ into a pipeline of data manipulation and visualisation.") (define-public r-hmm (package (name "r-hmm") - (version "1.0") + (version "1.0.1") (source (origin (method url-fetch) (uri (cran-uri "HMM" version)) (sha256 (base32 - "0z0hcqfixx1l2a6d3lpy5hmh0n4gjgs0jnck441akpp3vh37glzw")))) + "03b548bnwqpnd7zypb4gvy9chyi5li2hp99a9vrh4qszxg2ihas7")))) (properties `((upstream-name . "HMM"))) (build-system r-build-system) (home-page "https://cran.r-project.org/web/packages/HMM/") @@ -2036,14 +2261,14 @@ callback or connection interfaces.") (define-public r-hwriter (package (name "r-hwriter") - (version "1.3.2") + (version "1.3.2.1") (source (origin (method url-fetch) (uri (cran-uri "hwriter" version)) (sha256 (base32 - "0arjsz854rfkfqhgvpqbm9lfni97dcjs66isdsfvwfd2wz932dbb")))) + "1wxnv8h9cs65m3z01dpnnkgn2cpwfsck70g1jz9nbkr7mdaa4bzd")))) (build-system r-build-system) (home-page "https://cran.r-project.org/web/packages/hwriter") (synopsis "Output R objects in HTML format") @@ -2098,14 +2323,14 @@ data structures in C++.") (define-public r-fastghquad (package (name "r-fastghquad") - (version "1.0") + (version "1.0.1") (source (origin (method url-fetch) (uri (cran-uri "fastGHQuad" version)) (sha256 (base32 - "1rjia8wggadr9xwxcmzmal0rc4g6pa3dr5888fbbnb6abl8b2lrj")))) + "1zj7nsbnx4g253m3dpz9vi3zk3jxwrixwjw1ks6n4shpb4dlkp2w")))) (properties `((upstream-name . "fastGHQuad"))) (build-system r-build-system) (propagated-inputs @@ -2120,14 +2345,14 @@ rules and utility functions for adaptive GH quadrature.") (define-public r-rstpm2 (package (name "r-rstpm2") - (version "1.5.2") + (version "1.5.6") (source (origin (method url-fetch) (uri (cran-uri "rstpm2" version)) (sha256 (base32 - "0c6l3z250b2kn6mh2xyb0bd2y5nsbj11n9xfi51dac9s8xq3v7m4")))) + "17mhzfxh761vl64ar6pynpj3k2jkhjgbacxsjhkrfkbmy3aiv0d1")))) (properties `((upstream-name . "rstpm2"))) (build-system r-build-system) (propagated-inputs @@ -2212,14 +2437,14 @@ jQuery.") (define-public r-sass (package (name "r-sass") - (version "0.4.0") + (version "0.4.1") (source (origin (method url-fetch) (uri (cran-uri "sass" version)) (sha256 (base32 - "0axw358bbk3vxsqg3wq0bz3xigasa6af8fxvi2ga8hli4cawl1kx")))) + "1fq8wqnxmx10lg0dh4qzmxdkhd22fjh8vhassapxb1chsimwn3w5")))) (properties `((upstream-name . "sass"))) (build-system r-build-system) (propagated-inputs @@ -2234,6 +2459,41 @@ generate dynamic style sheets. The package uses the Sass CSS extension language, which is stable, powerful, and CSS compatible.") (license license:expat))) +(define-public r-saver + (package + (name "r-saver") + (version "1.1.2") + (source (origin + (method url-fetch) + (uri (cran-uri "SAVER" version)) + (sha256 + (base32 + "1s1kw8idkaj7j90fw4qn9k0wd4vz0sblsk06ry6lm4afcar0p158")))) + (properties `((upstream-name . "SAVER"))) + (build-system r-build-system) + (propagated-inputs + (list r-doparallel + r-foreach + r-glmnet + r-iterators + r-matrix)) + (native-inputs (list r-knitr)) + (home-page "https://github.com/mohuangx/SAVER") + (synopsis + "Recovery of gene expression profile in noisy and sparse scRNA-seq data") + (description + "This package is an implementation of a regularized regression prediction +and empirical Bayes method to recover the true gene expression profile in noisy +and sparse single-cell RNA-seq data. In @dfn{single-cell RNA sequencing} +(scRNA-seq) studies, only a small fraction of the transcripts present in each +cell are sequenced. This leads to unreliable quantification of genes with low +or moderate expression, which hinders downstream analysis. This package +@dfn{single-cell analysis via expression recovery} (SAVER) implements an +expression recovery method for unique molecule index (UMI)-based scRNA-seq +data that borrows information across genes and cells to provide accurate +expression estimates for all genes.") + (license license:gpl2))) + ;; This package includes minified JavaScript files. When upgrading please ;; check that there are no new minified JavaScript files. (define-public r-bslib @@ -2578,13 +2838,13 @@ application framework for R, making it easy to create attractive dashboards.") (define-public r-shinyfiles (package (name "r-shinyfiles") - (version "0.9.1") + (version "0.9.2") (source (origin (method url-fetch) (uri (cran-uri "shinyFiles" version)) (sha256 - (base32 "0f8dfdiar376lx0979ccyghgx5rhr08v5z3z60asrrjsxlq4cs85")))) + (base32 "1l4a4v9ivxkj2vx6xw4z3pk7a8px23icppcgvgpybibq2j74pglg")))) (properties `((upstream-name . "shinyFiles"))) (build-system r-build-system) (propagated-inputs @@ -2821,6 +3081,31 @@ distributions, and a variety of utility functions.") ;; Either version of the GPL. (license (list license:gpl2 license:gpl3)))) +(define-public r-homologene + (package + (name "r-homologene") + (version "1.4.68.19.3.27") + (source + (origin + (method url-fetch) + (uri (cran-uri "homologene" version)) + (sha256 + (base32 "0d7wxisk0vqk1n165v1i19bc02zv78h5r5d3jqai5y6nkmwn01sh")))) + (properties `((upstream-name . "homologene"))) + (build-system r-build-system) + (propagated-inputs + (list r-dplyr r-magrittr r-purrr r-r-utils r-readr)) + (home-page "https://github.com/oganm/homologene") + (synopsis "Quick access to homologene and gene annotation updates") + (description + "This package provides a wrapper for the homologene database by the +National Center for Biotechnology Information (NCBI). It allows searching for +gene homologs across species. The package also includes an updated version of +the homologene database where gene identifiers and symbols are replaced with +their latest (at the time of submission) version and functions to fetch latest +annotation data to keep updated.") + (license license:expat))) + (define-public r-ggtern (package (name "r-ggtern") @@ -3190,14 +3475,14 @@ including functions for geolocation and routing.") (define-public r-haven (package (name "r-haven") - (version "2.4.3") + (version "2.5.0") (source (origin (method url-fetch) (uri (cran-uri "haven" version)) (sha256 (base32 - "0pr9jcdk1r9pi9iz0xm1g5yy5qyjk5r7hh9467abx4kpwx3hzdwm")) + "1x5g6kjrzcyarbjz91f4aaspx7rb50qs6a9y29mzr3mjq4dk305m")) (modules '((guix build utils))) (snippet ;; unvendor readstat @@ -3208,17 +3493,22 @@ including functions for geolocation and routing.") (modify-phases %standard-phases (add-after 'unpack 'unbundle-readstat (lambda _ - ;; Not required, since we’re not building readstat. - (substitute* "src/Makevars" - (("-lz") "-lreadstat"))))))) + ;; We’re not building readstat. + (substitute* "configure" + (("exit 1") "")) ;don't be so dramatic! + (substitute* '("src/Makevars.in" + "configure") + (("^PKG_LIBS=.*") "PKG_LIBS=\"-lreadstat\"\n"))))))) (inputs (list readstat)) (native-inputs (list r-knitr)) (propagated-inputs - (list r-cpp11 + (list r-cli + r-cpp11 r-forcats r-hms + r-lifecycle r-rlang r-readr r-tibble @@ -3479,13 +3769,13 @@ print, summary, plot, update, etc. (define-public r-ps (package (name "r-ps") - (version "1.6.0") + (version "1.7.0") (source (origin (method url-fetch) (uri (cran-uri "ps" version)) (sha256 - (base32 "0cdzjqgap108whhsilxllg12m2d05pgksryhrz5bq608bvf7vbc9")))) + (base32 "1qaj9gyz7q09aadlnj5al53k2pa4axmzjsbndf5r0b51qqrcy842")))) (build-system r-build-system) (home-page "https://ps.r-lib.org") (synopsis "List, query, and manipulate system processes") @@ -3573,13 +3863,13 @@ value for each cluster in a dendrogram.") (define-public r-rcpp (package (name "r-rcpp") - (version "1.0.8.2") + (version "1.0.8.3") (source (origin (method url-fetch) (uri (cran-uri "Rcpp" version)) (sha256 - (base32 "01bvqlbg8qkc9z3gasz1ga5dwlpilknb05ikj79a055718djxgif")))) + (base32 "1gzqfn1xjawzig30ama3rldykqpcn6bd8sg684mrfvpmv96bi9cx")))) (build-system r-build-system) (home-page "http://www.rcpp.org") (synopsis "Seamless R and C++ integration") @@ -3594,17 +3884,38 @@ and Francois (2011, JSS), and the book by Eddelbuettel (2013, Springer); see @code{citation(\"Rcpp\")} for details on these last two.") (license license:gpl2+))) +(define-public r-rcppml + (package + (name "r-rcppml") + (version "0.3.7") + (source + (origin + (method url-fetch) + (uri (cran-uri "RcppML" version)) + (sha256 + (base32 "1ih8i7i6m221iw227mnl3rvnaw2l53h8fpnc4f8yn9sm10anap1j")))) + (properties `((upstream-name . "RcppML"))) + (build-system r-build-system) + (propagated-inputs (list r-matrix r-rcpp r-rcppeigen)) + (native-inputs (list r-knitr)) + (home-page "https://github.com/zdebruine/RcppML") + (synopsis "Rcpp machine learning library") + (description + "This package provides fast machine learning algorithms including matrix +factorization and divisive clustering for large sparse and dense matrices.") + (license license:gpl2+))) + (define-public r-rcppthread (package (name "r-rcppthread") - (version "2.1.2") + (version "2.1.3") (source (origin (method url-fetch) (uri (cran-uri "RcppThread" version)) (sha256 (base32 - "0a8767q4p76rfamss1w2vnx4h1229nmwymp1q63li2q5b87wipqp")))) + "0iprpidf7q1wlrgr9dwiikb6apqk80pyjcyni56k64nl7lrkszhj")))) (properties `((upstream-name . "RcppThread"))) (build-system r-build-system) (home-page @@ -3638,13 +3949,13 @@ with @code{Rcpp}.") (define-public r-rcppxptrutils (package (name "r-rcppxptrutils") - (version "0.1.1") + (version "0.1.2") (source (origin (method url-fetch) (uri (cran-uri "RcppXPtrUtils" version)) (sha256 - (base32 "0jh64c46gp99d2nsih14vx34pamc8i7gkmiy2nj94rx3sxq62yh5")))) + (base32 "0hm57nf4dzgsmg4hjj6wikwjx93fgfwkmybw6ly4b58wi6qwml1l")))) (properties `((upstream-name . "RcppXPtrUtils"))) (build-system r-build-system) (propagated-inputs (list r-rcpp)) @@ -3699,14 +4010,14 @@ bindings that call a C++ function.") (define-public r-auc (package (name "r-auc") - (version "0.3.0") + (version "0.3.2") (source (origin (method url-fetch) (uri (cran-uri "AUC" version)) (sha256 (base32 - "0ripcib2qz0m7rgr1kiz68nx8f6p408l1ww7j78ljqik7p3g41g7")))) + "07xf47kypqbsg2mixmq6mnh4s89aqan9bgl6kfv6lbx8ajv2asw3")))) (properties `((upstream-name . "AUC"))) (build-system r-build-system) (home-page "https://cran.r-project.org/web/packages/AUC") @@ -3783,14 +4094,14 @@ validation and filtering on the values, making options invisible or private.") (define-public r-circlize (package (name "r-circlize") - (version "0.4.14") + (version "0.4.15") (source (origin (method url-fetch) (uri (cran-uri "circlize" version)) (sha256 (base32 - "0b0yqjmbj1s1jg7y6cgyawadlfv0i6xrls8a4qy9qs7hz8zrpvb1")))) + "1iswb7dy08as3pbzxvhx5qlsbnwvp79nwg8m158nfz7y2d9xa0nn")))) (build-system r-build-system) (propagated-inputs (list r-colorspace r-globaloptions r-shape)) @@ -3935,14 +4246,14 @@ any subsequent lookup as it keeps the hash table in memory.") (define-public r-ff (package (name "r-ff") - (version "4.0.5") + (version "4.0.7") (source (origin (method url-fetch) (uri (cran-uri "ff" version)) (sha256 (base32 - "0dsh6llfdz04w94xr3yl2b4vkk9g3rwhvfnxcd025v2424krxfls")))) + "1yl3ipzz9bjkfy9bbna7xz5n7iz4lchnw5l7agww7by764yk6iqa")))) (build-system r-build-system) (propagated-inputs (list r-bit)) (home-page "http://ff.r-forge.r-project.org/") @@ -4017,17 +4328,17 @@ curve to a data matrix in arbitrary dimensions.") (define-public r-reshape (package (name "r-reshape") - (version "0.8.8") + (version "0.8.9") (source (origin (method url-fetch) (uri (cran-uri "reshape" version)) (sha256 (base32 - "0s6i0sqxg1vldxs6miv8mi0zydxbqzgpmzfiwkj8y7jix3yrfmad")))) + "0j203qmc076x5lp6q2xi4dq4xdb73jmsa42rpxp1c37knnrph4br")))) (build-system r-build-system) (propagated-inputs - (list r-plyr r-rcpp)) + (list r-plyr)) (home-page "http://had.co.nz/reshape") (synopsis "Flexibly reshape data") (description @@ -4038,16 +4349,17 @@ curve to a data matrix in arbitrary dimensions.") (define-public r-restrserve (package (name "r-restrserve") - (version "0.4.1") + (version "1.1.1") (source (origin (method url-fetch) (uri (cran-uri "RestRserve" version)) (sha256 - (base32 "1486hrzj5q5w4nbrsbqlv7vv20ly01y90qc2vygl5syzwvyjd422")))) + (base32 "1ydsdgy6mxl0zqk7xqf4v6if5nf2qv7k48q340fhaqyjk2gd60p7")))) (build-system r-build-system) (propagated-inputs (list r-checkmate + r-digest r-jsonlite r-mime r-r6 @@ -4150,13 +4462,13 @@ most popular ones.") (define-public r-sp (package (name "r-sp") - (version "1.4-6") + (version "1.4-7") (source (origin (method url-fetch) (uri (cran-uri "sp" version)) (sha256 - (base32 "09m2ddbrbs2aqnq5si42ipa0g1vbd0pxg4zbcx59is2047pv7sws")))) + (base32 "1bdi06n5zkjnnyh0rallf04s0vlcx9rg9p5q7s6vfqvkf19nk501")))) (build-system r-build-system) (propagated-inputs (list r-lattice)) @@ -4194,14 +4506,14 @@ a variety of different samplers.") (define-public r-rmtstat (package (name "r-rmtstat") - (version "0.3") + (version "0.3.1") (source (origin (method url-fetch) (uri (cran-uri "RMTstat" version)) (sha256 (base32 - "1nn25q4kmh9kj975sxkrpa97vh5irqrlqhwsfinbck6h6ia4rsw1")))) + "1r1a2sdqv64m9cpm2pz6r8abf7l810126ayd8iq3gx86c7bjfj5v")))) (properties `((upstream-name . "RMTstat"))) (build-system r-build-system) (home-page "https://cran.r-project.org/web/packages/RMTstat") @@ -4355,14 +4667,14 @@ spreadsheet software.") (define-public r-extremes (package (name "r-extremes") - (version "2.1-1") + (version "2.1-2") (source (origin (method url-fetch) (uri (cran-uri "extRemes" version)) (sha256 (base32 - "00ps7yggp89sx1j0w6c8dk0la3k95rwjv1iz7rdfqy7i46xjf6as")))) + "19q560prq02h3bwk01jb68693qb5bhsv8wiqhia7v5knm34qv8x7")))) (properties `((upstream-name . "extRemes"))) (build-system r-build-system) (propagated-inputs @@ -4378,14 +4690,14 @@ or excesses over a high threshold.") (define-public r-lmtest (package (name "r-lmtest") - (version "0.9-39") + (version "0.9-40") (source (origin (method url-fetch) (uri (cran-uri "lmtest" version)) (sha256 (base32 - "126l0y7j2iy6g1w4zii1qkfcjq6wrnc3w2li0bz376smpryddy3i")))) + "15yr2kx08wy085bnziqmj1p6hf9mg3qp2a8465jk2df6di6hsh34")))) (build-system r-build-system) (propagated-inputs (list r-zoo)) @@ -4502,14 +4814,14 @@ matrices, a special case of sparse matrices.") (define-public r-bbmle (package (name "r-bbmle") - (version "1.0.24") + (version "1.0.25") (source (origin (method url-fetch) (uri (cran-uri "bbmle" version)) (sha256 (base32 - "1bck8rmink4wsk8pcbnj4d60svxymp29pxbzwj8p9gzsg42c1v81")))) + "0mdj21q7k0fp4cj7la14vmcjmp49zqm57g7r6zrwmxpv0acwda46")))) (build-system r-build-system) (propagated-inputs (list r-bdsmatrix @@ -4638,14 +4950,14 @@ data). Weighted versions of MLE, MME and QME are available.") (define-public r-energy (package (name "r-energy") - (version "1.7-9") + (version "1.7-10") (source (origin (method url-fetch) (uri (cran-uri "energy" version)) (sha256 (base32 - "1ndssfi0hbnsm5jwrns7m63ppxm221hd6gk0b0wa1a7mk7ny1l38")))) + "19xyw5bkyzfk22gly2ca2nsznqnrhaq4a77727kr1k26bj3y8gal")))) (build-system r-build-system) (propagated-inputs (list r-boot r-gsl r-rcpp)) @@ -5004,14 +5316,14 @@ Optimization problems by using the simplex algorithm.") (define-public r-geometry (package (name "r-geometry") - (version "0.4.5") + (version "0.4.6") (source (origin (method url-fetch) (uri (cran-uri "geometry" version)) (sha256 (base32 - "1n10l8ax3783v3lgaacb15qsn8b3f0wpmhg3k39j31s6ciyd3vcg")))) + "1n7m0djqlhrv01l98r76grkki6cv4k4q2z6c7fksqgq4r2l6a14i")))) (build-system r-build-system) (propagated-inputs (list r-magic r-linprog r-lpsolve r-rcpp r-rcppprogress)) @@ -5035,14 +5347,14 @@ Delaunay triangulation and convex hull computation.") (define-public r-ddalpha (package (name "r-ddalpha") - (version "1.3.12") + (version "1.3.13") (source (origin (method url-fetch) (uri (cran-uri "ddalpha" version)) (sha256 (base32 - "07q6yrs1cqplbwv4wyvq26w4aj04jyajk4qh7vixm6i515cipsil")))) + "1bjfgb3lbzhjb5wx9hzp90jppq7vnj59bmd2n9ymi8sh1570m9p4")))) (build-system r-build-system) (propagated-inputs (list r-bh @@ -5140,14 +5452,14 @@ problems as well as resampling based estimators of prediction error.") (define-public r-psych (package (name "r-psych") - (version "2.1.9") + (version "2.2.5") (source (origin (method url-fetch) (uri (cran-uri "psych" version)) (sha256 (base32 - "032h33i2qlwsw2iq82nri5y8hs7d593w40aghcvnibpi2wxf0x8l")))) + "08f3byqwabgkqcxwpjbsxdcjkdg012iraqinw0fzskfl1srzkhyw")))) (build-system r-build-system) (propagated-inputs (list r-lattice r-mnormt r-nlme)) @@ -5193,14 +5505,14 @@ by base R methods related to model fitting.") (define-public r-broom (package (name "r-broom") - (version "0.7.12") + (version "0.8.0") (source (origin (method url-fetch) (uri (cran-uri "broom" version)) (sha256 (base32 - "1nbv4a4s8548h2q226xmhyp42higayh95yvllh1rcs264lmw3yh4")))) + "16grzja9hz5mqpfzbp1r6zif1gp7swfadkm52340si9h8ifhk8b6")))) (build-system r-build-system) (propagated-inputs (list r-backports @@ -5277,14 +5589,14 @@ models.") (define-public r-pdist (package (name "r-pdist") - (version "1.2") + (version "1.2.1") (source (origin (method url-fetch) (uri (cran-uri "pdist" version)) (sha256 (base32 - "18nd3mgad11f2zmwcp0w3sxlch4a9y6wp8dfdyzvjn7y4b4bq0dd")))) + "0bvg8si81hs79v39d7svv4zbv2p0sk2r6m9vamibvkh9qvl4x406")))) (build-system r-build-system) (home-page "https://github.com/jeffwong/pdist") (synopsis "Partitioned distance function") @@ -5646,14 +5958,14 @@ programming} (SQP) based solver).") (define-public r-hardyweinberg (package (name "r-hardyweinberg") - (version "1.7.4") + (version "1.7.5") (source (origin (method url-fetch) (uri (cran-uri "HardyWeinberg" version)) (sha256 (base32 - "11y3zg8aqxk5xdzsv7i3bgqkky6a0wgf2n8saa3a4adq75k328ib")))) + "0b3szw090dsc3bkas2kvx787ww2i6zzg2qmdyivmqc8amx5arn6g")))) (properties `((upstream-name . "HardyWeinberg"))) (build-system r-build-system) (propagated-inputs @@ -5698,13 +6010,13 @@ and density estimation") (define-public r-venndiagram (package (name "r-venndiagram") - (version "1.7.1") + (version "1.7.3") (source (origin (method url-fetch) (uri (cran-uri "VennDiagram" version)) (sha256 (base32 - "0yw54j9as0vf8ypnq4a3sl2w0lajri6s979f4y11hjzpgmr1m16b")))) + "0ilcxcp8qskmb5cp7fyb7i0qizg42lrx0ny8ws3if90kfrglghp7")))) (properties `((upstream-name . "VennDiagram"))) (build-system r-build-system) (propagated-inputs @@ -6032,14 +6344,14 @@ plots in @code{ggplot2}.") (define-public r-cli (package (name "r-cli") - (version "3.2.0") + (version "3.3.0") (source (origin (method url-fetch) (uri (cran-uri "cli" version)) (sha256 (base32 - "0qp8k1afrn6ppwi6d9n05fjgj02196qcsppji3q37ph99msinnnd")))) + "0qqd4mscv8ndjbji7knprdlv2hhyk35gazagvapbjzq1p6yfpaf3")))) (build-system r-build-system) (propagated-inputs (list r-glue)) @@ -6094,13 +6406,13 @@ constants, and control debugging of packages via environment variables.") (define-public r-processx (package (name "r-processx") - (version "3.5.2") + (version "3.5.3") (source (origin (method url-fetch) (uri (cran-uri "processx" version)) (sha256 - (base32 "0azw8sx6nv6pp8m8jrwq01b9na2swrnznn7dwrhn07268w82svzd")))) + (base32 "0ail3w8n5g1ibdamgpxcfpla18kqkilmppiasm7ms67cavx2k5k7")))) (build-system r-build-system) (propagated-inputs (list r-ps r-r6)) @@ -6181,14 +6493,14 @@ of merit, ordering functions, and enhanced versions of @code{pairs} and (define-public r-webshot (package (name "r-webshot") - (version "0.5.2") + (version "0.5.3") (source (origin (method url-fetch) (uri (cran-uri "webshot" version)) (sha256 (base32 - "0gq4h8cw51z95yvsnf38kj5l58wgljkm0dalmi8mn1sp06bxr0zi")))) + "1h6v94zwq0ypgi4vf8xlhp5k13j7f9061hx908177i68c6zg5i5p")))) (build-system r-build-system) (propagated-inputs (list r-callr r-jsonlite r-magrittr)) @@ -6204,14 +6516,14 @@ Markdown documents.") (define-public r-seriation (package (name "r-seriation") - (version "1.3.3") + (version "1.3.5") (source (origin (method url-fetch) (uri (cran-uri "seriation" version)) (sha256 (base32 - "1f6hxbrixqaj4vh4svff5pz9ny9h10snrrigk2r9c59amhkgih80")))) + "0dlj0mqpg585m6i7yn0h878i8ag6pyqph98xkk42i2nvghpy01gr")))) (build-system r-build-system) (propagated-inputs (list r-cluster @@ -6236,13 +6548,13 @@ iVAT).") (define-public r-xfun (package (name "r-xfun") - (version "0.30") + (version "0.31") (source (origin (method url-fetch) (uri (cran-uri "xfun" version)) (sha256 - (base32 "1vn0cbskyrk8ww9yx75jni9s684yv4cvbj643lvg0lg00briry7b")))) + (base32 "0dgjkrlwl6rxmvdn6s1xrbiaa53hkfx2s7rqrbrc7c6shbkg6sfi")))) (build-system r-build-system) ;; knitr itself depends on xfun #; @@ -6298,20 +6610,42 @@ right-hand side of an assignment into multiple values and assigns these values to variables on the left-hand side of the assignment.") (license license:expat))) +(define-public r-zlog + (package + (name "r-zlog") + (version "1.0.0") + (source (origin + (method url-fetch) + (uri (cran-uri "zlog" version)) + (sha256 + (base32 + "1d5j31p0h3rrn230087h3ngpvwknlisjv0f1qdbicdj9m177spci")))) + (properties `((upstream-name . "zlog"))) + (build-system r-build-system) + (native-inputs (list r-knitr)) + (home-page "https://cran.r-project.org/package=zlog") + (synopsis "Transformation for laboratory easurements") + (description + "The @code{zlog} package offers functions to transform laboratory +measurements into standardised z or @math{z(log)-values}. Therefore the lower +and upper reference limits are needed. If these are not known they could be +estimated from a given sample.") + (license license:gpl3+))) + (define-public r-vctrs (package (name "r-vctrs") - (version "0.3.8") + (version "0.4.1") (source (origin (method url-fetch) (uri (cran-uri "vctrs" version)) (sha256 (base32 - "1c8v5lmap6iq4jpi7p3w05hsv2dq7rjg057pvnfyc5d1xmsqnkkz")))) + "1pb0wjpwix29q8d8p3wi72a9mp9mif7369pk31w238cs00g8hxln")))) (build-system r-build-system) (propagated-inputs - (list r-ellipsis r-glue r-rlang)) + (list r-cli r-glue r-rlang)) (native-inputs (list r-knitr)) (home-page "https://github.com/r-lib/vctrs") @@ -6388,14 +6722,14 @@ packages that work with genomic data.") (define-public r-uuid (package (name "r-uuid") - (version "1.0-3") + (version "1.1-0") (source (origin (method url-fetch) (uri (cran-uri "uuid" version)) (sha256 (base32 - "0il35jnci537r8zkinyiy5jp5q530p85ln6dswpj884zclrlcvj5")))) + "0bzlc2knmr338h4ykx8v8c2a1inizxafj8rh13kwii68gpp50nz7")))) (build-system r-build-system) (home-page "https://www.rforge.net/uuid") (synopsis "Tools for generating and handling of UUIDs") @@ -6407,14 +6741,14 @@ packages that work with genomic data.") (define-public r-tinytex (package (name "r-tinytex") - (version "0.37") + (version "0.39") (source (origin (method url-fetch) (uri (cran-uri "tinytex" version)) (sha256 (base32 - "1na8g4z1crq0ia9ba17d0qxaif47jij2z3y14xlxjv7x243k6krg")))) + "1v95pjxdq0ma90jji5yqh8ihlcf35cmrqx9v0z649zh0q9vrnbpj")))) (build-system r-build-system) (propagated-inputs (list r-xfun)) @@ -6466,14 +6800,14 @@ features: (define-public r-network (package (name "r-network") - (version "1.17.1") + (version "1.17.2") (source (origin (method url-fetch) (uri (cran-uri "network" version)) (sha256 (base32 - "19q563v5xfkbmr0ws9nhqx4wrxkf9jsck51rqc8mm2gq2h03lg7w")))) + "1xrhzbci7ls4h05skdlirxl49jsvmylrqivz2kd6i33wh2ca324m")))) (build-system r-build-system) (propagated-inputs (list r-magrittr r-statnet-common r-tibble)) @@ -6535,14 +6869,14 @@ vectors.") (define-public r-statnet-common (package (name "r-statnet-common") - (version "4.5.0") + (version "4.6.0") (source (origin (method url-fetch) (uri (cran-uri "statnet.common" version)) (sha256 (base32 - "0bw8dwnv568i60xrj6d7gv0hnna1x7rvqaayy5i0827khvdj7nrw")))) + "07djgc6qbxahiy5v15lfayxbj4188lxsb8xcs7hnbm2hic953bfx")))) (properties `((upstream-name . "statnet.common"))) (build-system r-build-system) @@ -6676,13 +7010,13 @@ information between package updates.") (define-public r-leaflet (package (name "r-leaflet") - (version "2.1.0") + (version "2.1.1") (source (origin (method url-fetch) (uri (cran-uri "leaflet" version)) (sha256 - (base32 "0i2ziy3zmya3i0v4ma0b1ymw4mds7di0xjirs452n20z8l31lhhs")) + (base32 "0xsng9n08i1w7qj4hbi706m6d8jm9ixrnwq5xac2s3csfm1s1xij")) (snippet '(for-each delete-file @@ -6952,14 +7286,14 @@ Fisher's method), and Sidak correction.") (define-public r-quantmod (package (name "r-quantmod") - (version "0.4.18") + (version "0.4.20") (source (origin (method url-fetch) (uri (cran-uri "quantmod" version)) (sha256 (base32 - "0dbcrncv06iqcbkky95dd7l32xq0hhbnkb0kj8wwzym1jf748h5a")))) + "154fqhw46kc7r08zsj5fsg97hg93phsli3z14xwmz22xb50xymzp")))) (build-system r-build-system) (propagated-inputs (list r-curl r-ttr r-xts r-zoo)) @@ -6973,14 +7307,14 @@ financial trading strategies.") (define-public r-tseries (package (name "r-tseries") - (version "0.10-49") + (version "0.10-51") (source (origin (method url-fetch) (uri (cran-uri "tseries" version)) (sha256 (base32 - "1fhldj95d16cwygw8xg0kvr4xk569mpzprdvahlsf4hzykc2dgs5")))) + "0zr09ikaz96djcvnjbr8ah6waqzjy06f4yd4isshlwc391q20px5")))) (build-system r-build-system) (propagated-inputs (list r-quadprog r-quantmod r-zoo)) @@ -7111,14 +7445,14 @@ applied econometric analysis.") (define-public r-cubature (package (name "r-cubature") - (version "2.0.4.2") + (version "2.0.4.4") (source (origin (method url-fetch) (uri (cran-uri "cubature" version)) (sha256 (base32 - "0kk9lw3s66h0sayza3in8rdj7bmgqn4v5lfckhslarpvj2fxsnv0")))) + "0sfmcy5xpa40w3qn0jbg7b802wksl5k8glz9jpx77n159wn3nyq8")))) (build-system r-build-system) (propagated-inputs (list r-rcpp)) @@ -7419,14 +7753,14 @@ Memorial-Sloan-Kettering Cancer Center (MSKCC).") (define-public r-import (package (name "r-import") - (version "1.2.0") + (version "1.3.0") (source (origin (method url-fetch) (uri (cran-uri "import" version)) (sha256 (base32 - "018s0x224gqnv4cjfh0fwliyfg6ma9vslmwybrlizfsmqcc5wp37")))) + "19g4jnfg9pkvvsncw62yc15xlb97hfbdqxivpjd9jqi36i6mdjrg")))) (build-system r-build-system) (native-inputs (list r-knitr)) @@ -7445,14 +7779,14 @@ files.") (define-public r-shinyace (package (name "r-shinyace") - (version "0.4.1") + (version "0.4.2") (source (origin (method url-fetch) (uri (cran-uri "shinyAce" version)) (sha256 (base32 - "1m33dfm2kjirvgix7ybv1kbzgjkicdpv411g9c0q3fw6rnyhfxxn")))) + "12mqvdh6rxsr61pc3pzla95r5f4l7xagjs2rcdr7c2lbqyxpx6aa")))) (properties `((upstream-name . "shinyAce"))) (build-system r-build-system) (propagated-inputs @@ -7464,6 +7798,26 @@ files.") environment within Shiny.") (license license:expat))) +(define-public r-rafalib + (package + (name "r-rafalib") + (version "1.0.0") + (source + (origin + (method url-fetch) + (uri (cran-uri "rafalib" version)) + (sha256 + (base32 "1dmxjl66bfdgrybhwyaa8d4i460liqcdw8b29a6w7shgksh29m0k")))) + (properties `((upstream-name . "rafalib"))) + (build-system r-build-system) + (propagated-inputs (list r-rcolorbrewer)) + (home-page "https://cran.r-project.org/package=rafalib") + (synopsis "Convenience functions for routine data exploration") + (description + "This package provides a series of shortcuts for routine tasks to +facilitate data exploration.") + (license license:artistic2.0))) + (define-public r-randomizr (package (name "r-randomizr") @@ -7516,14 +7870,14 @@ systems.") (define-public r-radiant-data (package (name "r-radiant-data") - (version "1.4.1") + (version "1.4.2") (source (origin (method url-fetch) (uri (cran-uri "radiant.data" version)) (sha256 (base32 - "12x4nz5n6yz1a67ji79pwvznp9flmn50hpp9y9sfhixir7dvwy27")) + "0c5c99q13pwv6k0b07x3r2bxmh0h2w15h02xb1pincgs61qwi15k")) (modules '((guix build utils))) (snippet '(begin @@ -7577,13 +7931,13 @@ the application.") (define-public r-algdesign (package (name "r-algdesign") - (version "1.2.0") + (version "1.2.1") (source (origin (method url-fetch) (uri (cran-uri "AlgDesign" version)) (sha256 - (base32 "0ammlg148gk0p24fh700116nd66636np0jb1wwh0axq5jphwk1pz")))) + (base32 "01cx63wqr6yvgl5ml1lj6gh9p1sn42b6qcnsppcw7mvba9n652ar")))) (properties `((upstream-name . "AlgDesign"))) (build-system r-build-system) (home-page "https://github.com/jvbraun/AlgDesign") @@ -7783,14 +8137,14 @@ multivariate plot methods.") (define-public r-fnn (package (name "r-fnn") - (version "1.1.3") + (version "1.1.3.1") (source (origin (method url-fetch) (uri (cran-uri "FNN" version)) (sha256 (base32 - "0cllqlnynm5yaj4r64mqyyfc8phkb38rwssq8k8ikgfgr4jklxny")))) + "0nmynpiy3d2dnd5ngjf4m79jy02byhk43gj0xny9a6j8243f5c2j")))) (properties `((upstream-name . "FNN"))) (build-system r-build-system) (home-page "https://cran.r-project.org/web/packages/FNN") @@ -8007,14 +8361,14 @@ goodness-of-fit.") (define-public r-abc (package (name "r-abc") - (version "2.1") + (version "2.2.1") (source (origin (method url-fetch) (uri (cran-uri "abc" version)) (sha256 (base32 - "0ngzaaz2y2s03fhngvwipmy4kq38xrmyddaz6a6l858rxvadrlhb")))) + "16753lyzk2dfwgdjfyanwacqw3bvrwby52inq4709804labs6lnv")))) (build-system r-build-system) (propagated-inputs (list r-abc-data r-locfit r-mass r-nnet r-quantreg)) @@ -8113,14 +8467,14 @@ simple method for converting between file types.") (define-public r-maptools (package (name "r-maptools") - (version "1.1-3") + (version "1.1-4") (source (origin (method url-fetch) (uri (cran-uri "maptools" version)) (sha256 (base32 - "0ixvh4qbdjjl19ghgbb2r26yksya977q1yzs4yn5wshwm0763xph")))) + "1jgx8iiirj8qhrmh19mkisa35jcql7352dmc7lvwi5vxg3wjbvpk")))) (build-system r-build-system) (propagated-inputs (list r-foreign r-lattice r-sp)) @@ -8210,16 +8564,18 @@ using the @code{snow} package.") (define-public r-fstcore (package (name "r-fstcore") - (version "0.9.8") + (version "0.9.12") (source (origin (method url-fetch) (uri (cran-uri "fstcore" version)) (sha256 - (base32 "1qicjwsm87wgjm5mxrsgi697fmcfz6wyqcxfgngwxrf8kq4awjsf")))) + (base32 "1a5m68n2dqhi3r8wf5jwg4vjvl550c7wypcf5j0xmkvl836yg1lg")))) (properties `((upstream-name . "fstcore"))) (build-system r-build-system) (propagated-inputs (list r-rcpp)) + (inputs (list zlib)) + (native-inputs (list pkg-config)) (home-page "https://www.fstpackage.org/fstcore/") (synopsis "R bindings to the fstlib library") (description @@ -8553,14 +8909,14 @@ those searches and pull data into their R sessions.") (define-public r-renv (package (name "r-renv") - (version "0.15.4") + (version "0.15.5") (source (origin (method url-fetch) (uri (cran-uri "renv" version)) (sha256 (base32 - "0byfs4cydhyqzdrxjv7sa6i30xc7qhnx0qw9d8wwwlzdkv235flf")))) + "0bjq3ms5dg155clya62m462m93g90sxfxm7b4cqhqbx8vakskwdl")))) (properties `((upstream-name . "renv"))) (build-system r-build-system) (native-inputs @@ -8670,14 +9026,14 @@ always locate the files relative to your project root.") (define-public r-reticulate (package (name "r-reticulate") - (version "1.24") + (version "1.25") (source (origin (method url-fetch) (uri (cran-uri "reticulate" version)) (sha256 (base32 - "1k0nv43fa9lx44pamxpprnvvmsp15adn5z6hg9siyq0n94hca65r")))) + "0b1szzsqyc8wcfpkn5517bb1ds064vs2hky71my3p74kfngay991")))) (build-system r-build-system) (inputs (list python)) (propagated-inputs @@ -9049,14 +9405,14 @@ steps and provides ggplot2-based elegant data visualization.") (define-public r-fansi (package (name "r-fansi") - (version "1.0.2") + (version "1.0.3") (source (origin (method url-fetch) (uri (cran-uri "fansi" version)) (sha256 (base32 - "0mxm06png4lrl5gy5giws5dgig2faryang8y0wcvwfk120pczqni")))) + "0sn0kflgcn2qrrv646pzqylm02cx8l5ws473ppmvla4xihyvi9w6")))) (build-system r-build-system) (native-inputs (list r-knitr)) ; for vignettes @@ -9070,14 +9426,14 @@ that account for the effects of ANSI text formatting control sequences.") (define-public r-nbclust (package (name "r-nbclust") - (version "3.0") + (version "3.0.1") (source (origin (method url-fetch) (uri (cran-uri "NbClust" version)) (sha256 (base32 - "1vwb48zy6ln1ddpqmfngii1i80n8qmqyxnzdp6gbaq96lakl3w3c")))) + "0k5hr4zgx4gp1n62xchgz2zvyl35ba2cnczhhvj8rfbg2n4hx6qs")))) (properties `((upstream-name . "NbClust"))) (build-system r-build-system) (home-page "https://sites.google.com/site/malikacharrad/research/nbclust-package") @@ -9171,15 +9527,16 @@ contrasts).") (define-public r-polynom (package (name "r-polynom") - (version "1.4-0") + (version "1.4-1") (source (origin (method url-fetch) (uri (cran-uri "polynom" version)) (sha256 (base32 - "1pflscwc0qzdf0y60j7s0dkglgmz18xajywfbn6s263idyr8idy5")))) + "0y4j07syjwpnq5w6a1d90z6h1hjzijmm42pq0f8jk2vcn5xxn7mw")))) (build-system r-build-system) + (native-inputs (list r-knitr)) (home-page "https://cran.r-project.org/web/packages/polynom/") (synopsis "Functions for univariate polynomial manipulations") (description @@ -9243,14 +9600,14 @@ functions.") (define-public r-rjags (package (name "r-rjags") - (version "4-12") + (version "4-13") (source (origin (method url-fetch) (uri (cran-uri "rjags" version)) (sha256 (base32 - "041y4zfr50y96g0kl857jcba0a3gpdpk8qfn9fj8zxzbz71k87xr")))) + "0cibz6xhmh86fh7ynmdgpmlchizi57pi6dpslgc2if17a56c6p7q")))) (build-system r-build-system) (propagated-inputs (list r-coda)) @@ -9269,14 +9626,14 @@ hierarchical models using Markov Chain Monte Carlo (MCMC) simulation.") (define-public r-rbibutils (package (name "r-rbibutils") - (version "2.2.7") + (version "2.2.8") (source (origin (method url-fetch) (uri (cran-uri "rbibutils" version)) (sha256 (base32 - "1iamdbww3hvxy0bbywc307kyhiczx0bvfhw7nngsm33balcng7kw")))) + "0lnia2fk8zlvkkgnl7r7dyi1ip5vqlw448qrvqs2s14rpbpcvbpi")))) (properties `((upstream-name . "rbibutils"))) (build-system r-build-system) (home-page "https://geobosh.github.io/rbibutils/") @@ -9291,14 +9648,14 @@ implemented in bibutils.") (define-public r-rdpack (package (name "r-rdpack") - (version "2.1.4") + (version "2.3") (source (origin (method url-fetch) (uri (cran-uri "Rdpack" version)) (sha256 (base32 - "0r242a352wa7kha0n62ng6ri0qi14hwjknnyjvfcd7mx4qvfwhgv")))) + "1igpa4hnpiykbdnq57mglby5jsbind6izkkfy81wx4ib6nw1lpn4")))) (properties `((upstream-name . "Rdpack"))) (build-system r-build-system) (propagated-inputs @@ -9317,19 +9674,17 @@ references and Rd files.") (define-public r-officer (package (name "r-officer") - (version "0.4.1") + (version "0.4.2") (source (origin (method url-fetch) (uri (cran-uri "officer" version)) (sha256 (base32 - "1gfx299zr4q2264q37994pirv5bd5isn1cszccz603ij3q40wajr")))) + "0qmn62srh9zicgizyblanirbdva7f09g967yb86kfrn05ckh5y10")))) (build-system r-build-system) (propagated-inputs (list r-r6 r-uuid r-xml2 r-zip)) - (native-inputs - (list r-knitr)) (home-page "https://davidgohel.github.io/officer") (synopsis "Manipulation of Word and PowerPoint documents") (description @@ -9535,14 +9890,14 @@ other add-on packages.") (define-public r-insight (package (name "r-insight") - (version "0.16.0") + (version "0.17.1") (source (origin (method url-fetch) (uri (cran-uri "insight" version)) (sha256 (base32 - "0gcyps0889rys04bj70br5zfvzcqxd55yawykmns17n9hsixfi3r")))) + "0dffrsimgijdqsgvr9cad4g4w97d5ssjl3l0fm5ssly9l115ag35")))) (build-system r-build-system) (native-inputs (list r-knitr)) @@ -9563,17 +9918,17 @@ information are missing.") (define-public r-sjlabelled (package (name "r-sjlabelled") - (version "1.1.8") + (version "1.2.0") (source (origin (method url-fetch) (uri (cran-uri "sjlabelled" version)) (sha256 (base32 - "17gskxr43rgbg7syla3b78g2qgksq2kj07iad4139xycqxblxya0")))) + "1va86q5wddyvqgdpy8d0an2c7v1qbb4hpn0ai6y1v5v1ff87w73k")))) (build-system r-build-system) (propagated-inputs - (list r-insight)) + (list r-datawizard r-insight)) (native-inputs (list r-knitr)) (home-page "https://github.com/strengejacke/sjlabelled") @@ -9820,14 +10175,14 @@ matches version and feature constraints.") (define-public r-argparse (package (name "r-argparse") - (version "2.1.3") + (version "2.1.5") (source (origin (method url-fetch) (uri (cran-uri "argparse" version)) (sha256 (base32 - "0vm6nrzl6rsq2qw3km3i4s92kq9phs3cbxzv3i8hlyld9ajk3nmf")))) + "13b5halfxc7nr57vkz3qmkkcpw1hr4xdk1mjh2cq8cvpnjz15qc3")))) (build-system r-build-system) (inputs (list python)) (propagated-inputs @@ -9845,14 +10200,14 @@ and automatically generate usage notices.") (define-public r-hash (package (name "r-hash") - (version "2.2.6.1") + (version "2.2.6.2") (source (origin (method url-fetch) (uri (cran-uri "hash" version)) (sha256 (base32 - "0b3fl0rvgwb992knl81vm99lsldg5clvaqjh6mamm6zqmb6dz056")))) + "17scs675a86c34hjbxmwi8kny4yyv97x3515s449zafj2i0ad8vm")))) (build-system r-build-system) (home-page "https://cran.r-project.org/web/packages/hash/") (synopsis "Implementation of hash/associated arrays/dictionaries") @@ -9914,14 +10269,14 @@ the work.") (define-public r-doby (package (name "r-doby") - (version "4.6.12") + (version "4.6.13") (source (origin (method url-fetch) (uri (cran-uri "doBy" version)) (sha256 (base32 - "1m60ya4cdickqsj0dc90bv4n47df6qg6n82fikxrkl4yhg7yyn1i")))) + "0qnfcw4rg5kd1mll3rq6vchz3lgdqfif9469p8x6ixsgrxxpivbz")))) (properties `((upstream-name . "doBy"))) (build-system r-build-system) (propagated-inputs @@ -10179,14 +10534,14 @@ and make comparisons between different methodologies straightforward.") (define-public r-infotheo (package (name "r-infotheo") - (version "1.2.0") + (version "1.2.0.1") (source (origin (method url-fetch) (uri (cran-uri "infotheo" version)) (sha256 (base32 - "18xacczfq3z3xpy434js4nf3l19lczngzd0lq26wh22pvg1yniwv")))) + "1m1979vf8rvq3534mp1hihfadikhxrg3p6ac3hirz96kgb4qxyy0")))) (build-system r-build-system) (home-page "http://homepage.meyerp.com/software") (synopsis "Information-theoretic measures") @@ -10225,14 +10580,14 @@ from the @code{stats} package (plus some extra parameters).") (define-public r-cmplot (package (name "r-cmplot") - (version "4.0.0") + (version "4.1.0") (source (origin (method url-fetch) (uri (cran-uri "CMplot" version)) (sha256 (base32 - "0xyh75y0c84nnkrv6c8xrvla54w51phgdwn8a69799f2r87z7c81")))) + "1h09prpiw7l32mr7jarp8ddrddg1431nfn4kw3bznfnv0sr78zfg")))) (properties `((upstream-name . "CMplot"))) (build-system r-build-system) (home-page "https://github.com/YinLiLin/CMplot") @@ -10555,14 +10910,14 @@ a library of prediction algorithms to be used in the super learner.") (define-public r-drtmle (package (name "r-drtmle") - (version "1.1.0") + (version "1.1.1") (source (origin (method url-fetch) (uri (cran-uri "drtmle" version)) (sha256 (base32 - "08a6k0nrg6mqdslwjc71583x52vnax87nbfalk98zczwvrrdwvxa")))) + "12vplpz9bg5444jy29mbdr70hqby073vb3iw76v2csrwy3ws3f21")))) (properties `((upstream-name . "drtmle"))) (build-system r-build-system) (propagated-inputs @@ -10580,14 +10935,14 @@ both to consistency and asymptotic normality.") (define-public r-dofuture (package (name "r-dofuture") - (version "0.12.0") + (version "0.12.2") (source (origin (method url-fetch) (uri (cran-uri "doFuture" version)) (sha256 (base32 - "1hqzdlgcrc5l6xjwdylsc9iiysi2wx8k1j1vmw3wryj26057c9y4")))) + "0w07pmzpsfq4kvfc745s1i9b6dfn1df1wrfi4s9ys4ir3g2s8nk1")))) (properties `((upstream-name . "doFuture"))) (build-system r-build-system) (arguments @@ -10691,14 +11046,14 @@ subsequence} (LCS) using a dynamic programming algorithm.") (define-public r-labelled (package (name "r-labelled") - (version "2.9.0") + (version "2.9.1") (source (origin (method url-fetch) (uri (cran-uri "labelled" version)) (sha256 (base32 - "0ffnhlr239nqcwb35m4hll21abnnhpmyy5wlxnyahrg0kqb0xb1n")))) + "0h7scbyzh7kr51gds222rkhld2b3k36s86hj8rrzpwv4bwj0pccy")))) (properties `((upstream-name . "labelled"))) (build-system r-build-system) (propagated-inputs @@ -10885,13 +11240,13 @@ calls to the particular toolkits in use in function of the context.") (define-public r-svdialogs (package (name "r-svdialogs") - (version "1.0.3") + (version "1.1.0") (source (origin (method url-fetch) (uri (cran-uri "svDialogs" version)) (sha256 - (base32 "0j00xjvkwv992ir48czhvyj29rb9vpd243vbyyj2binn0q0qa431")))) + (base32 "0z3a5glsi0ab43mdk2yvslxyzg12nbqqqc35jvgzj475mpkbgjif")))) (properties `((upstream-name . "svDialogs"))) (build-system r-build-system) (inputs @@ -10978,18 +11333,17 @@ genotypes as \"graphical genotypes\".") (define-public r-furrr (package (name "r-furrr") - (version "0.2.3") + (version "0.3.0") (source (origin (method url-fetch) (uri (cran-uri "furrr" version)) (sha256 (base32 - "001p2yhznrpnrjvdcmf2h3wpgdnw01wnqgid7wbq8bhavhi3888a")))) + "117xj66l14r08macwghgyibzm282ljv1afpa133h952gc70irs9z")))) (build-system r-build-system) (propagated-inputs - (list r-ellipsis - r-future + (list r-future r-globals r-lifecycle r-purrr @@ -11431,14 +11785,14 @@ analysis.") (define-public r-gee (package (name "r-gee") - (version "4.13-22") + (version "4.13-23") (source (origin (method url-fetch) (uri (cran-uri "gee" version)) (sha256 (base32 - "1wbwn7bjqz09l6clh43dy3x5qgv9b9wwn7xnfw9fkkrhn6rvc3rw")))) + "0v0fam678pqqkxmj95f1pwsi08y1rbz1wxnp1ig81jvpn0xpq8gq")))) (properties `((upstream-name . "gee"))) (build-system r-build-system) (native-inputs @@ -11650,13 +12004,13 @@ series.") (define-public r-acceptancesampling (package (name "r-acceptancesampling") - (version "1.0-7") + (version "1.0-8") (source (origin (method url-fetch) (uri (cran-uri "AcceptanceSampling" version)) (sha256 - (base32 "13k3zczjycw24n5yp0qmrm233id5j8h6fvra57f1n6js7ljxiiq2")))) + (base32 "1ja1g0v8qvf7yj81x37wc6i7fkwpc573756jgvazazi8yf1gm12p")))) (properties `((upstream-name . "AcceptanceSampling"))) (build-system r-build-system) @@ -11748,14 +12102,14 @@ cross-sectional, time series, clustered, panel, and longitudinal data.") (define-public r-th-data (package (name "r-th-data") - (version "1.1-0") + (version "1.1-1") (source (origin (method url-fetch) (uri (cran-uri "TH.data" version)) (sha256 (base32 - "0ghihfpk5d8gsdlzf6phw7dwwz3adx64pxk82vlmlqx53ljpxcr1")))) + "0ynxacnz002bjsp2ybql7rdqw4zd14af8r7w44nwbx22n4bapwzd")))) (properties `((upstream-name . "TH.data"))) (build-system r-build-system) (propagated-inputs @@ -11772,14 +12126,14 @@ packages maintained by Torsten Hothorn.") (define-public r-multcomp (package (name "r-multcomp") - (version "1.4-18") + (version "1.4-19") (source (origin (method url-fetch) (uri (cran-uri "multcomp" version)) (sha256 (base32 - "01i8gjppyxl3xph1dw0kags8qbb7r06j91kk3lkqn5gzrxjmwyhh")))) + "0mz5wdqrqpp2gqijfpp9rgfbq8yvxki4is8fbbc4qwdwryqp6d7h")))) (build-system r-build-system) (propagated-inputs (list r-codetools r-mvtnorm r-sandwich r-survival r-th-data)) @@ -11817,14 +12171,14 @@ the differences were not significantly different.") (define-public r-emmeans (package (name "r-emmeans") - (version "1.7.2") + (version "1.7.4-1") (source (origin (method url-fetch) (uri (cran-uri "emmeans" version)) (sha256 (base32 - "1g112yvqvxi83x128hwz4qpifwihlm0y5szg82cdsx3c9cm1rrfk")))) + "08g7ifqhwqa00hc850nwx03dp7isz0281ig6kvixc4xdahmkm8zp")))) (build-system r-build-system) (propagated-inputs (list r-estimability r-mvtnorm r-numderiv r-xtable)) @@ -11946,14 +12300,14 @@ Bayesian modeling.") (define-public r-tmb (package (name "r-tmb") - (version "1.8.0") + (version "1.9.0") (source (origin (method url-fetch) (uri (cran-uri "TMB" version)) (sha256 (base32 - "158spsz8inxhs3dw6cq2wwkkhvgkfjyyz577s89x08yly7layq2l")))) + "1mr5vwamw6ag1fhd83jyy6015296908qwshwq0fcphhiv60x579c")))) (properties `((upstream-name . "TMB"))) (build-system r-build-system) (propagated-inputs @@ -12049,14 +12403,14 @@ differentiation.") (define-public r-bayestestr (package (name "r-bayestestr") - (version "0.11.5") + (version "0.12.1") (source (origin (method url-fetch) (uri (cran-uri "bayestestR" version)) (sha256 (base32 - "0lz8mzacxgmll576p88654mrvlk4pzvhwwghvn5pm7zxisgx0kq0")))) + "1fbkpagc5zznrafy7h68nhx43a1yg4v7242pbqjkd0h2481c101z")))) (properties `((upstream-name . "bayestestR"))) (build-system r-build-system) (propagated-inputs @@ -12076,14 +12430,14 @@ ROPE percentage and pd).") (define-public r-performance (package (name "r-performance") - (version "0.8.0") + (version "0.9.0") (source (origin (method url-fetch) (uri (cran-uri "performance" version)) (sha256 (base32 - "1xjjnhqmwfflm5yfgjhycjn0fj0manvsvkk2ppifn0373bajp5n2")))) + "1znr4i1pjv6z3lj6qrma2i3l94rz1z29w92mrxxfy3ch0s71crww")))) (build-system r-build-system) (propagated-inputs (list r-bayestestr r-datawizard r-insight)) @@ -12102,14 +12456,14 @@ effects models and Bayesian models.") (define-public r-ggeffects (package (name "r-ggeffects") - (version "1.1.1") + (version "1.1.2") (source (origin (method url-fetch) (uri (cran-uri "ggeffects" version)) (sha256 (base32 - "0xrb105kblkj3l9zlj9yy52rjlmx5x2aai1wwb5zvjr1f6nlc84l")))) + "01yyfw7fkbxrp0gpwni5y8m4w9l3xckwc3crnvy1fqs1d6gwx3xx")))) (build-system r-build-system) (propagated-inputs (list r-insight r-mass r-sjlabelled)) @@ -12130,14 +12484,14 @@ results using @code{ggplot2}.") (define-public r-effectsize (package (name "r-effectsize") - (version "0.6.0.1") + (version "0.7.0") (source (origin (method url-fetch) (uri (cran-uri "effectsize" version)) (sha256 (base32 - "1rhpbhyrv0avinm6dz6v2qw4xxdl9m1wknq1dv2flfxgcz0k9qiz")))) + "07dbj7n9vwjkb7xrdj224lzc3ppr3jjdgyyilkj7gpkvgjgfrqhz")))) (properties `((upstream-name . "effectsize"))) (build-system r-build-system) (propagated-inputs @@ -12385,14 +12739,14 @@ user credentials.") (define-public r-gert (package (name "r-gert") - (version "1.5.0") + (version "1.6.0") (source (origin (method url-fetch) (uri (cran-uri "gert" version)) (sha256 (base32 - "1bm2fjyh527y6x0dr5cs8h31jgl1fkk09ljzj1h37d0c7f4k1hwz")))) + "0r19vi77yyjw5gbhgjibdysjlszlw2095v14f6sv675zpbp0li4c")))) (properties `((upstream-name . "gert"))) (build-system r-build-system) (inputs @@ -12419,14 +12773,14 @@ User credentials are shared with command line git through the (define-public r-usethis (package (name "r-usethis") - (version "2.1.5") + (version "2.1.6") (source (origin (method url-fetch) (uri (cran-uri "usethis" version)) (sha256 (base32 - "0lph2rxv7nq3h022gp8d50wbq5lwicnx85d2l5dx876wxhb9wlvx")))) + "0638dzl4nm4c36990sf2biy74hjr2fzlqzfb98fsqrbhaw3ngp1i")))) (build-system r-build-system) (propagated-inputs (list r-cli @@ -12558,17 +12912,17 @@ of the individual checks.") (define-public r-rapportools (package (name "r-rapportools") - (version "1.0") + (version "1.1") (source (origin (method url-fetch) (uri (cran-uri "rapportools" version)) (sha256 (base32 - "1sgv4sc737i12arh5dc3263kjsz3dzg06qihfmrqyax94mv2d01b")))) + "0qr86idng12g6hdd764j0wmli700v7rjhw7jdjxj0ka8xm5v7ymm")))) (build-system r-build-system) (propagated-inputs - (list r-pander r-plyr r-reshape)) + (list r-mass r-pander r-plyr r-reshape2)) (home-page "https://cran.r-project.org/web/packages/rapportools/") (synopsis "Miscellaneous helper functions with sane defaults for reporting") (description @@ -12580,14 +12934,14 @@ quick reporting.") (define-public r-pander (package (name "r-pander") - (version "0.6.4") + (version "0.6.5") (source (origin (method url-fetch) (uri (cran-uri "pander" version)) (sha256 (base32 - "1knjcr50xxns3w3kh15myjpsizn4d7fdqx071a4yj90imif07qjh")))) + "144zkq5w7v6fpzk3x40i0baybbp0y6x2ckh4b9qljryas9mhgp9a")))) (build-system r-build-system) (propagated-inputs (list r-digest r-rcpp)) @@ -12607,14 +12961,14 @@ ways.") (define-public r-summarytools (package (name "r-summarytools") - (version "1.0.0") + (version "1.0.1") (source (origin (method url-fetch) (uri (cran-uri "summarytools" version)) (sha256 (base32 - "04qcysfywljnqkcz2b7kzpy0xv3ykkvvb14vnda63z1wvmadyhkn")))) + "0gr95cd1ja8di6s0xghk6w7nj3bh3z4g7j7ixdy7f88q681aixgx")))) (build-system r-build-system) (propagated-inputs (list r-base64enc @@ -12778,14 +13132,14 @@ analysing multivariate abundance data in community ecology.") (define-public r-afex (package (name "r-afex") - (version "1.0-1") + (version "1.1-1") (source (origin (method url-fetch) (uri (cran-uri "afex" version)) (sha256 (base32 - "1k04n6gwk2n8kg0l3yk5j3wrqgkv5f6w04yjpif9y451hx5w7svg")))) + "09q426s2zmzxx5ilxy0x5mflpb38pl075ss1s8xvpswkn6cia0b6")))) (build-system r-build-system) ;; This is needed for the vignette builder (arguments @@ -13069,13 +13423,13 @@ netCDF files.") (define-public r-biocmanager (package (name "r-biocmanager") - (version "1.30.16") + (version "1.30.18") (source (origin (method url-fetch) (uri (cran-uri "BiocManager" version)) (sha256 - (base32 "0m9qxwqajg8lp0z06blbpgk3zw0z73aly1cvmjk6mvwja6jm99vm")))) + (base32 "0dawbd546rznllpw5wq282r0viga4cck398d4s1inkk18mmi4qzp")))) (properties `((upstream-name . "BiocManager"))) (build-system r-build-system) (native-inputs @@ -13090,14 +13444,14 @@ Bioconductor packages.") (define-public r-rgl (package (name "r-rgl") - (version "0.108.3") + (version "0.108.3.2") (source (origin (method url-fetch) (uri (cran-uri "rgl" version)) (sha256 (base32 - "0fqkx079z9y5b1gdg6qfz2wpw2j8q3ddflfkd9wwrkyacas6xyc9")))) + "0r9wzhjzl346i37ngs6hqzmizhi53kzqz582lv822v6yxang6fh3")))) (build-system r-build-system) (native-inputs (list pkg-config r-knitr)) @@ -13171,13 +13525,13 @@ isosurfaces.") (define-public r-ks (package (name "r-ks") - (version "1.13.4") + (version "1.13.5") (source (origin (method url-fetch) (uri (cran-uri "ks" version)) (sha256 - (base32 "15sm1ys7sk0gn7hr1vik4xrn4jdf837knwk7j8h32lr29w9mh917")))) + (base32 "05bqrjkbx2kn5aax0hy3xd6pf7nxka9bm1sp8ll1cc2gf1nx1i6i")))) (build-system r-build-system) (propagated-inputs (list r-fnn @@ -13256,14 +13610,14 @@ University Press, 2007.") (define-public r-circular (package (name "r-circular") - (version "0.4-94") + (version "0.4-95") (source (origin (method url-fetch) (uri (cran-uri "circular" version)) (sha256 (base32 - "0wanbd6n7g1avvyc7pm0lnkwg868dix2byiz4wm6vmxzm0y47fmr")))) + "1qmwj1pf37lc2s5r83y7nqckscznqhbsv66bdfgfbby7x4qkwga8")))) (build-system r-build-system) (propagated-inputs (list r-boot r-mvtnorm)) @@ -13280,17 +13634,17 @@ Scientific.") (define-public r-activity (package (name "r-activity") - (version "1.3.1") + (version "1.3.2") (source (origin (method url-fetch) (uri (cran-uri "activity" version)) (sha256 (base32 - "1wn2a0hx7wfr2jyj1b772w5fgl6bcqkkw8cybais2s1wyjx8kjr5")))) + "11n6wmqz7p3428rr615f92m61a5gb908xpn4l8q484h61bwg38c3")))) (build-system r-build-system) (propagated-inputs - (list r-circular r-insol r-pbapply)) + (list r-insol r-pbapply)) (home-page "https://cran.r-project.org/web/packages/activity/") (synopsis "Animal activity statistics") (description @@ -13304,14 +13658,14 @@ circular variables).") (define-public r-ouch (package (name "r-ouch") - (version "2.17") + (version "2.18") (source (origin (method url-fetch) (uri (cran-uri "ouch" version)) (sha256 (base32 - "1a7r24j59xz3lxa5wc694j6b80j8m5l86zd1sw9pvs66l8gd98kf")))) + "119s9llpjy0b4q830xig2xr66fq6izp6mr2k4k79ggmf3gxww8as")))) (build-system r-build-system) (propagated-inputs (list r-subplex)) (home-page "https://kingaa.github.io/ouch/") @@ -13408,13 +13762,13 @@ Anderson-Darling Distribution\".") (define-public r-admisc (package (name "r-admisc") - (version "0.25") + (version "0.27") (source (origin (method url-fetch) (uri (cran-uri "admisc" version)) (sha256 - (base32 "0cf8dy0mi3ynm2ic8jp0qi1samyzashwlzz0l64izqqv2s4hpyzp")))) + (base32 "07hfrhv3pcldsffnyfzpa1q3x32gxr1386r8fik1nhql2w46mm13")))) (properties `((upstream-name . "admisc"))) (build-system r-build-system) (home-page "https://github.com/dusadrian/admisc") @@ -13629,14 +13983,14 @@ over-plotting in scatter plots with text.") (define-public r-colorramps (package (name "r-colorramps") - (version "2.3") + (version "2.3.1") (source (origin (method url-fetch) (uri (cran-uri "colorRamps" version)) (sha256 (base32 - "0shbjh83x1axv4drm5r3dwgbyv70idih8z4wlzjs4hiac2qfl41z")))) + "12jnkj50yh2hc5l7j56lrrrmn58akrj9dwj98vzf42iq4h42kwb1")))) (properties `((upstream-name . "colorRamps"))) (build-system r-build-system) (home-page "https://cran.r-project.org/web/packages/colorRamps") @@ -13887,18 +14241,20 @@ definiteness of a matrix.") (define-public r-rspectra (package (name "r-rspectra") - (version "0.16-0") + (version "0.16-1") (source (origin (method url-fetch) (uri (cran-uri "RSpectra" version)) (sha256 (base32 - "1ab45as2ysjrvkhvmx7y3nbhd0y1w4j9k2a789lcd973zz4wzwda")))) + "16ij84wgpsmqmnxqiii8dgihy3bfxazry9znmckhwzba7m0d79fb")))) (properties `((upstream-name . "RSpectra"))) (build-system r-build-system) (propagated-inputs (list r-matrix r-rcpp r-rcppeigen)) + (native-inputs + (list r-knitr)) (home-page "https://github.com/yixuan/RSpectra") (synopsis "Solvers for large-scale Eigenvalue and SVD problems") (description @@ -13934,14 +14290,14 @@ diagnostics for controlling type-1 errors are also provided.") (define-public r-flare (package (name "r-flare") - (version "1.7.0") + (version "1.7.0.1") (source (origin (method url-fetch) (uri (cran-uri "flare" version)) (sha256 (base32 - "0f992dmgnr6s8g3386i9bjfyf08q8srgw7sjz2yx7snj8znq7251")))) + "1xvrbvq2y7zfp98ijal3z8y1w2xbzfcdykzw4pqc3mnh0qrhq2d5")))) (build-system r-build-system) (propagated-inputs (list r-igraph r-lattice r-mass r-matrix)) @@ -14031,13 +14387,13 @@ Touzet and Varre (2007).") (define-public r-rncl (package (name "r-rncl") - (version "0.8.4") + (version "0.8.6") (source (origin (method url-fetch) (uri (cran-uri "rncl" version)) (sha256 (base32 - "0ss9jqrvv7bhvl5j74cjrp8r866d9dlavrbbfscwz3mhkgfx06bb")))) + "1ywgwqn82z8h6zpcxxq4hgngdpfa6dj0lr7bfq4cwfml9z075jgw")))) (build-system r-build-system) (propagated-inputs (list r-progress r-rcpp)) @@ -14075,13 +14431,13 @@ methods, incorporating one or more trees and trait data.") (define-public r-rnexml (package (name "r-rnexml") - (version "2.4.6") + (version "2.4.7") (source (origin (method url-fetch) (uri (cran-uri "RNeXML" version)) (sha256 (base32 - "0k56brcg80mvx35hgc5gj8arwba4k7q0075g38qp0qgq9d1b87cs")))) + "1zp6pijsc73jx8cmxb1hng36nvaf5wnhldnzlqhmba9kv9niscfb")))) (build-system r-build-system) (propagated-inputs (list r-ape @@ -14273,14 +14629,14 @@ be imported and then exported via the @code{gridSVG} package.") (define-public r-kohonen (package (name "r-kohonen") - (version "3.0.10") + (version "3.0.11") (source (origin (method url-fetch) (uri (cran-uri "kohonen" version)) (sha256 (base32 - "1ck7j13x701g67bx81x7plszz804jfhl1yg42krcj9x88vm5cscr")))) + "1bk3j0n8w4fhffv89rgyn4n21c0wcx6lr8jv4wbagpxprl585381")))) (build-system r-build-system) (propagated-inputs (list r-rcpp)) @@ -14548,14 +14904,14 @@ preparing, executing, and processing HTTP requests.") (define-public r-gmp (package (name "r-gmp") - (version "0.6-4") + (version "0.6-5") (source (origin (method url-fetch) (uri (cran-uri "gmp" version)) (sha256 (base32 - "0vfhz5cpffcrmq011h7jvy1r6d5pbbpkxj8431bhj5x5h25x7sjn")))) + "0llyd1wx606vpgvv7d61m0fv2a5yxsmisd38fhzanbjl2wynzrwa")))) (build-system r-build-system) (arguments '(#:phases @@ -14625,14 +14981,14 @@ want to include run-time testing features in their own packages.") (define-public r-assertive-properties (package (name "r-assertive-properties") - (version "0.0-4") + (version "0.0-5") (source (origin (method url-fetch) (uri (cran-uri "assertive.properties" version)) (sha256 (base32 - "0sqs54acs9qk9kvm32rxzfbzxz1l8mjahpfnw7r30z2brgz661jw")))) + "1pgljbwwbvbl4kc5c8mcv0qbzq3k6fzi29k88811yml263sm92dn")))) (properties `((upstream-name . "assertive.properties"))) (build-system r-build-system) @@ -15086,14 +15442,14 @@ covariance functions for large data sets.") (define-public r-spatialextremes (package (name "r-spatialextremes") - (version "2.0-9") + (version "2.1-0") (source (origin (method url-fetch) (uri (cran-uri "SpatialExtremes" version)) (sha256 (base32 - "1mhn1c8n3bmgf0fjyac3wji4790zswzkqliqcv3n8kv9806crb0y")))) + "0z1swxp1syz8hdskarjxx4sdd7wx835kcnb783bwqm235yh991j3")))) (properties `((upstream-name . "SpatialExtremes"))) (build-system r-build-system) @@ -15290,14 +15646,14 @@ library.") (define-public r-protviz (package (name "r-protviz") - (version "0.7.0") + (version "0.7.3") (source (origin (method url-fetch) (uri (cran-uri "protViz" version)) (sha256 (base32 - "0l1pmfr9kmc90rl5s9b0141451rxrjmiiasp3lsvl2x3ps0smqaj")))) + "0f6jwzcqi0w37hvg3i5dlk0c3anpkqh54ibf94vaf17r8sykr4nw")))) (properties `((upstream-name . "protViz"))) (build-system r-build-system) (propagated-inputs (list r-rcpp)) @@ -15362,14 +15718,14 @@ model with finite state space using the Aalen-Johansen estimator.") (define-public r-epi (package (name "r-epi") - (version "2.44") + (version "2.46") (source (origin (method url-fetch) (uri (cran-uri "Epi" version)) (sha256 (base32 - "1wcxr1f7irgfdwzz4vf67114yhxrhxxxnhy4hfaww0zy91vzxx10")))) + "0s3ij0rya4wd7k97kc4s3pwj1d1ypaxl1s7zqr6sa07hp4a8fzz0")))) (properties `((upstream-name . "Epi"))) (build-system r-build-system) (propagated-inputs @@ -15377,12 +15733,12 @@ model with finite state space using the Aalen-Johansen estimator.") r-data-table r-dplyr r-etm + r-magrittr r-mass r-matrix r-mgcv r-numderiv r-plyr - r-purrr r-survival r-zoo)) (home-page "https://BendixCarstensen.com/Epi/") @@ -15519,14 +15875,14 @@ subsetting.") (define-public r-globals (package (name "r-globals") - (version "0.14.0") + (version "0.15.0") (source (origin (method url-fetch) (uri (cran-uri "globals" version)) (sha256 (base32 - "1wrjiiif6rpc268zz79pvpw33si6n6ffgxdnxmmcracwhb5vqg90")))) + "15llx4233ihj4w815k7inc17530w9ja0mi29n1i0s2sr42j8jdpq")))) (build-system r-build-system) (propagated-inputs (list r-codetools)) @@ -15543,14 +15899,14 @@ them in distributed compute environments.") (define-public r-parallelly (package (name "r-parallelly") - (version "1.30.0") + (version "1.31.1") (source (origin (method url-fetch) (uri (cran-uri "parallelly" version)) (sha256 (base32 - "0fwzkzw9vjblwk5rg56yl8qfn7irnbpm70405lmj7awvf35q1c5a")))) + "1nhp66psk3m79is5qm4ppxkj7bdy46jr2h2pir22ia9ghhyzris0")))) (properties `((upstream-name . "parallelly"))) (build-system r-build-system) (home-page "https://github.com/HenrikBengtsson/parallelly") @@ -15571,14 +15927,14 @@ port-forwarding to your local computer.") (define-public r-future (package (name "r-future") - (version "1.24.0") + (version "1.26.1") (source (origin (method url-fetch) (uri (cran-uri "future" version)) (sha256 (base32 - "0xmj17fq9paww796490bmakv6pcvrzk15i8mzhxk1mp9l0mj32vv")))) + "1mchjdvvwgs8v0iv8z5m6gav3xzvnq11h8qrc7lfnrb2x3d0np53")))) (build-system r-build-system) (arguments `(#:phases @@ -15606,14 +15962,14 @@ the local machine to, say, distributed processing on a remote compute cluster.") (define-public r-future-apply (package (name "r-future-apply") - (version "1.8.1") + (version "1.9.0") (source (origin (method url-fetch) (uri (cran-uri "future.apply" version)) (sha256 (base32 - "1ix61bfbk43pwnjb0wk8lkfgdsy5zi8svk74gar5nrl90b5w6nqd")))) + "1xb7qj8izjwmy4aa92p5f4cdbhgp220hrly3b5879f9hrv2w2rk1")))) (properties `((upstream-name . "future.apply"))) (build-system r-build-system) (arguments @@ -15789,14 +16145,14 @@ several common set, element and attribute related tasks.") (define-public r-shinybs (package (name "r-shinybs") - (version "0.61") + (version "0.61.1") (source (origin (method url-fetch) (uri (cran-uri "shinyBS" version)) (sha256 (base32 - "0rhim4mbp4x9vvm7xkmpl7mhb9qd1gr96cr4dv330v863ra2kgji")))) + "0h51685a9qll4agayldjyryi60ih969219ibg071slv0613p5v8a")))) (properties `((upstream-name . "shinyBS"))) (build-system r-build-system) ;; The tests spawn Shiny browser apps. They cannot be run @@ -15902,14 +16258,14 @@ database.") (define-public r-outliers (package (name "r-outliers") - (version "0.14") + (version "0.15") (source (origin (method url-fetch) (uri (cran-uri "outliers" version)) (sha256 (base32 - "0vcqfqmmv4yblyp3s6bd25r49pxb7hjzipiic5a82924nqfqzkmn")))) + "1yrmwvjjb0a6sbx940k9svf23cykcxz8rrwcgyic7lpgzbrdfcfc")))) (build-system r-build-system) (home-page "https://cran.r-project.org/web/packages/outliers/index.html") (synopsis "Tests for outliers") @@ -16025,14 +16381,14 @@ numbers (e.g. concentrations).") (define-public r-cobs (package (name "r-cobs") - (version "1.3-4") + (version "1.3-5") (source (origin (method url-fetch) (uri (cran-uri "cobs" version)) (sha256 (base32 - "0hiw5smk6kgk0gb9840kcqkhkybl7n30s77xhjc395x09izbgix1")))) + "04f6a6gp11p93j2k35mbrfqgjx5qsgi3dj1085a5v5s0z6l7vbkz")))) (build-system r-build-system) (propagated-inputs (list r-quantreg r-sparsem)) @@ -16195,14 +16551,14 @@ select colors to use in your R code.") (define-public r-ggextra (package (name "r-ggextra") - (version "0.9") + (version "0.10.0") (source (origin (method url-fetch) (uri (cran-uri "ggExtra" version)) (sha256 (base32 - "18mbi6gblqmrsciad1d2c9ngllk6mayaqj43k40hjq9ydqnvjbgj")))) + "1rd3qv6ah3zphr1jicjhgxms73vi496mjnxnsrcgl7z8nyxmas6w")))) (properties `((upstream-name . "ggExtra"))) (build-system r-build-system) (propagated-inputs @@ -16227,14 +16583,14 @@ marginal histograms/boxplots/density plots to ggplot2 scatterplots.") (define-public r-minpack-lm (package (name "r-minpack-lm") - (version "1.2-1") + (version "1.2-2") (source (origin (method url-fetch) (uri (cran-uri "minpack.lm" version)) (sha256 (base32 - "18ym2pdql5vzngc7q5gn66d153hrfrnd8ilv8yh6vd7j7sx7vjql")))) + "11yz6hk2r33571d16kq01cb1x6sgdzi6jmksqlrm8mr84l95c2f7")))) (properties `((upstream-name . "minpack.lm"))) (build-system r-build-system) (native-inputs (list gfortran)) @@ -16251,14 +16607,14 @@ for lower and upper parameter bounds. The implementation can be used via (define-public r-moments (package (name "r-moments") - (version "0.14") + (version "0.14.1") (source (origin (method url-fetch) (uri (cran-uri "moments" version)) (sha256 (base32 - "0f9y58w1hxcz4bqivirx25ywlmc80gbi6dfx5cnhkpdg1pk82fra")))) + "0r6qf3i1rzh2822bx1p0h8mh91gsbgg6asl2rzh2l4ys094bilif")))) (build-system r-build-system) (home-page "https://cran.r-project.org/web/packages/moments") (synopsis "Moments, cumulants, skewness, kurtosis and related tests") @@ -16314,14 +16670,14 @@ probabilities from a standard bivariate normal CDF.") (define-public r-lavaan (package (name "r-lavaan") - (version "0.6-10") + (version "0.6-11") (source (origin (method url-fetch) (uri (cran-uri "lavaan" version)) (sha256 (base32 - "0dwc8rgrzyrrb0ivx297ln2qbrsxbpn6mdf7laiffhspdpml8sad")))) + "026k32paf51lpy6zxm9m81zg9szx14j37dxdip6nba334jw97h9c")))) (build-system r-build-system) (propagated-inputs (list r-mass r-mnormt r-numderiv r-pbivnorm)) @@ -16362,14 +16718,14 @@ obtain confidence intervals associated with AIC and BIC.") (define-public r-penalized (package (name "r-penalized") - (version "0.9-51") + (version "0.9-52") (source (origin (method url-fetch) (uri (cran-uri "penalized" version)) (sha256 (base32 - "1zcrwa93mc27qj3g4ayc2k895r6g8q0g6qb2azmvj7wqk750va7a")))) + "08badmgygppbqzay20qijyww028yw6s8dyd8ijcp8g4r9rn8xqyq")))) (build-system r-build-system) (propagated-inputs (list r-rcpp r-rcpparmadillo r-survival)) @@ -16437,14 +16793,14 @@ also provides tools for efficient random number generation and graphics.") (define-public r-beanplot (package (name "r-beanplot") - (version "1.2") + (version "1.3.1") (source (origin (method url-fetch) (uri (cran-uri "beanplot" version)) (sha256 (base32 - "0wmkr704fl8kdxkjwmaxw2a2h5dwzfgsgpncnk2p2wd4768jknj9")))) + "1b8mvlcsv5l9g08ag92hndsvk8jmgxvznhzgazc8y4296kp8l5a9")))) (build-system r-build-system) (home-page "https://cran.r-project.org/web/packages/beanplot/") (synopsis "Visualization via beanplots") @@ -16580,14 +16936,14 @@ network.") (define-public r-gmodels (package (name "r-gmodels") - (version "2.18.1") + (version "2.18.1.1") (source (origin (method url-fetch) (uri (cran-uri "gmodels" version)) (sha256 (base32 - "0s8kd8krqk4kwv2zqxpsfy3w8qdwf5naf4b5l383vidq9sil0qb2")))) + "158y7yh4maawn9vki8cq4sil48xib2bbpl6qgj5gvlkw3c14hzfs")))) (build-system r-build-system) (propagated-inputs (list r-gdata r-mass)) @@ -16935,14 +17291,14 @@ barplots or heatmaps.") (define-public r-seqinr (package (name "r-seqinr") - (version "4.2-8") + (version "4.2-16") (source (origin (method url-fetch) (uri (cran-uri "seqinr" version)) (sha256 (base32 - "1xz9spln6s9mcwpgcv1m4jymn4gnl1bb6vh90bphqcn0vvlk8jsq")))) + "0cj07b7km5mla63qhbkxg1mnqq6vh79lsyyfpnbm29gw68w2bwy4")))) (build-system r-build-system) (propagated-inputs (list r-ade4 r-segmented)) @@ -17195,13 +17551,13 @@ datum transformations.") (define-public r-spdep (package (name "r-spdep") - (version "1.2-2") + (version "1.2-4") (source (origin (method url-fetch) (uri (cran-uri "spdep" version)) (sha256 (base32 - "08sya6vy7s87h337g2fanncw6xx9y9z8nxpqalbdxv9vpsc6zx4l")) + "0xx6k3rsvsz1hwj0ny8aqfi9ca54x38f8pz8sfya5cggaspxbx59")) (snippet '(for-each delete-file '("inst/doc/CO69.html" "inst/doc/CO69.R" @@ -17237,14 +17593,14 @@ spanning tree.") (define-public r-adegenet (package (name "r-adegenet") - (version "2.1.5") + (version "2.1.6") (source (origin (method url-fetch) (uri (cran-uri "adegenet" version)) (sha256 (base32 - "1wjp31634n6z6wglf4z3ydrhhn5jmpwwckmp3n2b0v5f3p2fivp4")))) + "0sx25p7bgz0h9mc3jsdnnjhvmb7sy8nb3r0z923vhk336d4xw8vq")))) (build-system r-build-system) (propagated-inputs (list r-ade4 @@ -17374,13 +17730,13 @@ either PDF/EPS files.") (define-public r-polspline (package (name "r-polspline") - (version "1.1.19") + (version "1.1.20") (source (origin (method url-fetch) (uri (cran-uri "polspline" version)) (sha256 - (base32 "0rhzf735hmbqfn2xbgcln4sqx7m9far72g5gq9mghgkw016kqglm")))) + (base32 "1dd1jwiaglkkhajzvqfkd1x5r3wzjlk5ww0yxzmns0s1kr74i4k9")))) (build-system r-build-system) (native-inputs (list gfortran)) (home-page "https://cran.r-project.org/web/packages/polspline/") @@ -17394,13 +17750,13 @@ lspec, polyclass, and polymars.") (define-public r-rms (package (name "r-rms") - (version "6.2-0") + (version "6.3-0") (source (origin (method url-fetch) (uri (cran-uri "rms" version)) (sha256 - (base32 "1di4xvsx0rwkr77nfqiysbg4qf699199xqil70i39d4zwfzqrm8h")))) + (base32 "1yfk800q4mgmrjkh0hqjkiv907sr1bi1jaigrj8l6pmg1mkynhbc")))) (build-system r-build-system) (propagated-inputs (list r-cluster @@ -17640,13 +17996,13 @@ SELECT or UPDATE queries to an end-point.") (define-public r-bookdown (package (name "r-bookdown") - (version "0.24") + (version "0.26") (source (origin (method url-fetch) (uri (cran-uri "bookdown" version)) (sha256 (base32 - "1qqvvfbpbd6sin8vpvr3zzlhlyx1i6b98yp77xj5zl220nid5slb")))) + "11din9h2sgzvg44627xc5is4psbq2b34km5sbiaprskjrf474866")))) (build-system r-build-system) (propagated-inputs (list r-htmltools @@ -17661,7 +18017,7 @@ SELECT or UPDATE queries to an end-point.") ;; input to knitr. #; (native-inputs - `(("r-knitr" ,r-knitr))) + (list r-knitr)) (home-page "https://github.com/rstudio/bookdown") (synopsis "Authoring books and technical documents with R markdown") (description "This package provides output formats and utilities for @@ -17695,13 +18051,13 @@ that accept short and long options.") (define-public r-kernlab (package (name "r-kernlab") - (version "0.9-29") + (version "0.9-30") (source (origin (method url-fetch) (uri (cran-uri "kernlab" version)) (sha256 - (base32 "0vqhndl4zm7pvkfvq0f6i9cbrm7pij6kmdp7d7w39pa100x6knn3")))) + (base32 "10gfb542nbl1d5pfy6r7gcg3j1ikra9l18r6xjv8lzp5ka1kmz28")))) (build-system r-build-system) (home-page "https://cran.r-project.org/web/packages/kernlab") (synopsis "Kernel-based machine learning tools") @@ -17716,14 +18072,14 @@ and a QP solver.") (define-public r-hierfstat (package (name "r-hierfstat") - (version "0.5-10") + (version "0.5-11") (source (origin (method url-fetch) (uri (cran-uri "hierfstat" version)) (sha256 (base32 - "1p4vlna185sa3b5xjbysiqxcj9aa5s7dmxy41hg79vlqdivf874r")))) + "0nyb5091lr8ma9vydbssyx9503601rynlrbldv98mmrmh74h6v41")))) (build-system r-build-system) (propagated-inputs (list r-ade4 r-adegenet r-gaston r-gtools)) @@ -17742,14 +18098,14 @@ variance components, using the likelihood-ratio statistics G.") (define-public r-hapassoc (package (name "r-hapassoc") - (version "1.2-8") + (version "1.2-9") (source (origin (method url-fetch) (uri (cran-uri "hapassoc" version)) (sha256 (base32 - "0qs5jl0snzfchgpp6pabncwywxcmi743g91jvjiyyzw0lw85yv4s")))) + "09ijc4sbw743z74fzklmvig11ndkycg6j86k4214wfsj1yj6j9x6")))) (build-system r-build-system) (home-page "https://stat.sfu.ca/statgen/research/hapassoc.html") (synopsis "Inference of trait associations with SNP haplotypes") @@ -17784,14 +18140,14 @@ handle missing genotypes at some SNPs.") (define-public r-r2html (package (name "r-r2html") - (version "2.3.2") + (version "2.3.3") (source (origin (method url-fetch) (uri (cran-uri "R2HTML" version)) (sha256 (base32 - "00kxny7hajs9r2kw63qk7d03ggdxx2j1g8vbrmzp806y8aczvik9")))) + "12qg9rp1j26h2f48dfg5k9jds26ycacv3f3ymk686ks43hd1hzja")))) (properties `((upstream-name . "R2HTML"))) (build-system r-build-system) (home-page "https://github.com/nalimilan/R2HTML") @@ -17947,14 +18303,14 @@ interaction search in high-dimensional data.") (define-public r-extrafont (package (name "r-extrafont") - (version "0.17") + (version "0.18") (source (origin (method url-fetch) (uri (cran-uri "extrafont" version)) (sha256 (base32 - "0b9k2n9sk23bh45hjgnkxpjyvpdrz1hx7kmxvmb4nhlhm1wpsv9g")))) + "0mx810mld67vb1w3wkl4fhpjmkq32lgpq5x1c0a9rf8li5wskrj4")))) (build-system r-build-system) (propagated-inputs (list r-extrafontdb r-rttf2pt1)) @@ -18000,14 +18356,14 @@ the XKCD web comic.") (define-public r-babelgene (package (name "r-babelgene") - (version "21.4") + (version "22.3") (source (origin (method url-fetch) (uri (cran-uri "babelgene" version)) (sha256 (base32 - "1gk5pm3b3shr1id66a11ywc1b823gbj8yckg24szzfhj8g4ixyf0")))) + "1735h4s2vahv55pmq65zkgxq8d5x71i1is03rf17dric8yynjjhg")))) (properties `((upstream-name . "babelgene"))) (build-system r-build-system) (propagated-inputs @@ -18030,14 +18386,14 @@ compiled by the HGNC Comparison of Orthology Predictions (HCOP).") (define-public r-msigdbr (package (name "r-msigdbr") - (version "7.4.1") + (version "7.5.1") (source (origin (method url-fetch) (uri (cran-uri "msigdbr" version)) (sha256 (base32 - "103m52av68pkjfh8f81qh6j3cs1mj1lg831ciwybr34cax767jr1")))) + "1jna9bkq0a7r6f8nhxziyiw75kfhsyh1rv7sx5d4551mvxxlhc6w")))) (build-system r-build-system) (propagated-inputs (list r-babelgene @@ -18600,14 +18956,14 @@ repository.") (define-public r-mpm (package (name "r-mpm") - (version "1.0-22") + (version "1.0-23") (source (origin (method url-fetch) (uri (cran-uri "mpm" version)) (sha256 (base32 - "0wijw8v0wmbfrda5564cmnp788qmlkk21yn5cp5qk8aprm9l1fnk")))) + "1jpv2ddmw7aarqbbyfys1yb840arw33319wnny3v2hk84hldmayj")))) (build-system r-build-system) (propagated-inputs (list r-kernsmooth r-mass)) @@ -18668,14 +19024,14 @@ function for computing a matrix of correlation p-values.") (define-public r-ggfun (package (name "r-ggfun") - (version "0.0.5") + (version "0.0.6") (source (origin (method url-fetch) (uri (cran-uri "ggfun" version)) (sha256 (base32 - "10spayf5jzmizhs6aassjplrjr9mr6bcww30pyxzyb1djfl41qxi")))) + "06si42b60hp8wprs5nbks93qlb9s269k9kw7akcirizwc399x62r")))) (properties `((upstream-name . "ggfun"))) (build-system r-build-system) (propagated-inputs @@ -18961,14 +19317,14 @@ external dependencies. This package has is implemented purely in R.") (define-public r-aplot (package (name "r-aplot") - (version "0.1.2") + (version "0.1.4") (source (origin (method url-fetch) (uri (cran-uri "aplot" version)) (sha256 (base32 - "1w09flb6a4fxibfrm1z24pg672r80b7phgc0m7mv3vfw3l84v749")))) + "1b4jjj05a602dgn6yr1bsmbzlzkj6wf6af3k3w63g3mkqv0xzsfd")))) (properties `((upstream-name . "aplot"))) (build-system r-build-system) (propagated-inputs @@ -18976,8 +19332,7 @@ external dependencies. This package has is implemented purely in R.") r-ggplot2 r-ggplotify r-magrittr - r-patchwork - r-yulab-utils)) + r-patchwork)) (home-page "https://github.com/YuLab-SMU/aplot") (synopsis "Decorate a ggplot with associated information") (description @@ -18991,14 +19346,14 @@ matched.") (define-public r-ggnewscale (package (name "r-ggnewscale") - (version "0.4.6") + (version "0.4.7") (source (origin (method url-fetch) (uri (cran-uri "ggnewscale" version)) (sha256 (base32 - "08xqhv6y9m9f2p8q3h0dh7mbpqg3r2i590x2983k69plfa5jxzv3")))) + "108a7y6sqqvzyfk247lbmnacfpwdl405rf1b3fa62cgx8ycsq4kb")))) (properties `((upstream-name . "ggnewscale"))) (build-system r-build-system) (propagated-inputs @@ -19037,14 +19392,14 @@ colored by the number of neighboring points. This is useful to visualize the (define-public r-arrow (package (name "r-arrow") - (version "7.0.0") + (version "8.0.0") (source (origin (method url-fetch) (uri (cran-uri "arrow" version)) (sha256 (base32 - "1s9h2aw6iig45nz2rfk13qbp0qydx6cc4r6qs58f9cm9vgwsg76l")))) + "1b85vc5ld7nibqgsdkl5kbzc0rm5jh5lqfdrssvrrcxpd26a16kc")))) (properties `((upstream-name . "arrow"))) (build-system r-build-system) (inputs @@ -19098,14 +19453,14 @@ regular expressions from human readable expressions") (define-public r-mlapi (package (name "r-mlapi") - (version "0.1.0") + (version "0.1.1") (source (origin (method url-fetch) (uri (cran-uri "mlapi" version)) (sha256 (base32 - "023vk5bp8cjcq88sapkl87kdxr92bay1dyxl6xirnyj699pyj51k")))) + "1qyiii6x9b89i4pd4yi2zd23aabpmnpj18gqi5va0zy0l8r7kknr")))) (properties `((upstream-name . "mlapi"))) (build-system r-build-system) (propagated-inputs @@ -19124,14 +19479,14 @@ industry for machine learning tasks.") (define-public r-float (package (name "r-float") - (version "0.2-6.1") + (version "0.3-0") (source (origin (method url-fetch) (uri (cran-uri "float" version)) (sha256 (base32 - "07b3zaccrybd1vail8hs4kmcn3djqmr72j63h01rkmij2ry8pv8d")))) + "0m7bf3548vlgkk1c78jyrgj72ngwg0gsccap2iqinm3l3qrm4zbs")))) (properties `((upstream-name . "float"))) (build-system r-build-system) (native-inputs @@ -19184,14 +19539,14 @@ Row} (CSR) format.") (define-public r-text2vec (package (name "r-text2vec") - (version "0.6") + (version "0.6.1") (source (origin (method url-fetch) (uri (cran-uri "text2vec" version)) (sha256 (base32 - "0r75cv77x2zm1z66s95hic71dpbqmybz39n48q6mz7gfd3m7312y")))) + "0bisr31051hnshw26rp9r4bm8ksr977dl9k1d3fb1x79pq5aa2pi")))) (properties `((upstream-name . "text2vec"))) (build-system r-build-system) (propagated-inputs @@ -19220,14 +19575,14 @@ multicore machines.") (define-public r-mcmcpack (package (name "r-mcmcpack") - (version "1.6-1") + (version "1.6-3") (source (origin (method url-fetch) (uri (cran-uri "MCMCpack" version)) (sha256 (base32 - "1skanp6czfk83s13dnjrb699m9z6a0r59q0f79fv0k560jc8vbrj")))) + "1cwdjn43b9hxpxf9mnas583myhk6r2258mh57f0zsc8bd4hbl56b")))) (properties `((upstream-name . "MCMCpack"))) (build-system r-build-system) (propagated-inputs @@ -19420,14 +19775,14 @@ the functions can also be applied to other types of categorical data.") (define-public r-pbmcapply (package (name "r-pbmcapply") - (version "1.5.0") + (version "1.5.1") (source (origin (method url-fetch) (uri (cran-uri "pbmcapply" version)) (sha256 (base32 - "0i58gcqpnbyvc448qfgm45b7rpbmrnagsvk1h1hsqchbbicfslnz")))) + "1p8jf7c4k45482w72sr0jw4jkz787krrxai3sl6jz5l4lda2iz3z")))) (build-system r-build-system) (home-page "https://github.com/kvnkuang/pbmcapply") (synopsis "Track the progress of apply procedures with a progress bar") @@ -19499,14 +19854,14 @@ experiments in a well-organized and reproducible way.") (define-public r-clue (package (name "r-clue") - (version "0.3-60") + (version "0.3-61") (source (origin (method url-fetch) (uri (cran-uri "clue" version)) (sha256 (base32 - "0apgpdnn74mqg2bnr8yjyxgyvdl411h0r2b1r2xd67k21pyxs8bd")))) + "0cfw2k1kh4a8imdv7b5qw977xd6indampsabhfldj3rqrqb1ncbi")))) (build-system r-build-system) (propagated-inputs (list r-cluster)) (home-page "https://cran.r-project.org/web/packages/clue/") @@ -19680,14 +20035,14 @@ been used in the call to @code{aov}.") (define-public r-dalex (package (name "r-dalex") - (version "2.4.0") + (version "2.4.1") (source (origin (method url-fetch) (uri (cran-uri "DALEX" version)) (sha256 (base32 - "1s7r7k5ihdbj69r27vbcs3ghra9s4yqw7cyh2rkm2ry901zq3114")))) + "0mcdd2bd8zlsz7x174g87dp8vy4wc06w58dyr27f6lgv9shzya8j")))) (properties `((upstream-name . "DALEX"))) (build-system r-build-system) (propagated-inputs @@ -19851,14 +20206,14 @@ the current document.") (define-public r-xgboost (package (name "r-xgboost") - (version "1.5.2.1") + (version "1.6.0.1") (source (origin (method url-fetch) (uri (cran-uri "xgboost" version)) (sha256 (base32 - "13mi3rmpxhgm4qbm4xcqml9n5d1xyai2k1mi52i8x60jd5m8s319")))) + "1gafjv6vcpny03lqw8s68xszalsylniavaqwsbzh46vyk4h9mscs")))) (build-system r-build-system) (propagated-inputs (list r-data-table r-jsonlite r-matrix)) @@ -19880,17 +20235,17 @@ easily.") (define-public r-umap (package (name "r-umap") - (version "0.2.7.0") + (version "0.2.8.0") (source (origin (method url-fetch) (uri (cran-uri "umap" version)) (sha256 (base32 - "191vpy84s0bar06y9z1qx43x2kc4qp7lmrcmd0cvz2pnzq722jab")))) + "0aiarnzc8gl932gi8fxd9f9rshaiwh9vj570l135fkiaja3q2wap")))) (build-system r-build-system) (propagated-inputs - (list r-openssl r-rcpp r-reticulate r-rspectra)) + (list r-matrix r-openssl r-rcpp r-reticulate r-rspectra)) (native-inputs (list r-knitr)) (home-page "https://github.com/tkonopka/umap") @@ -20064,14 +20419,14 @@ computed using the L1 (Manhattan, taxicab) metric.") (define-public r-leiden (package (name "r-leiden") - (version "0.3.9") + (version "0.4.2") (source (origin (method url-fetch) (uri (cran-uri "leiden" version)) (sha256 (base32 - "03gaxpcab3a1av5lk8r5ll1s858gvyx5ndknci1sia96w1v44xc1")))) + "1gg24afwbz818041bhmswmdqgxv35zp5h1i1102p58aaiis8dkna")))) (properties `((upstream-name . "leiden"))) (build-system r-build-system) (propagated-inputs @@ -20354,23 +20709,24 @@ files is supported.") (define-public r-tidygraph (package (name "r-tidygraph") - (version "1.2.0") + (version "1.2.1") (source (origin (method url-fetch) (uri (cran-uri "tidygraph" version)) (sha256 (base32 - "17qjns33zcj82jcsl7bn7i4zxcm7ric50zyf7agi0i01zi16qz85")))) + "0dmdff3bkg53xn0c51xd6k2d9c7l250x1lhl5z3libf533dw5g9g")))) (properties `((upstream-name . "tidygraph"))) (build-system r-build-system) (propagated-inputs - (list r-dplyr + (list r-cli + r-cpp11 + r-dplyr r-igraph r-magrittr r-pillar r-r6 - r-rcpp r-rlang r-tibble r-tidyr)) @@ -20440,14 +20796,14 @@ in pipelines.") (define-public r-parameters (package (name "r-parameters") - (version "0.17.0") + (version "0.18.1") (source (origin (method url-fetch) (uri (cran-uri "parameters" version)) (sha256 (base32 - "0wrhs3rhr62441cghg4nsrlp6r41nf7x5nclzz71v5c0rfn8jh79")))) + "0zcypf3fi745pa18vpqgx3q9izhkkmpcvcv1gv8pxawyq9mw8ag9")))) (properties `((upstream-name . "parameters"))) (build-system r-build-system) (propagated-inputs @@ -20468,13 +20824,13 @@ effect size.") (define-public r-rgdal (package (name "r-rgdal") - (version "1.5-28") + (version "1.5-32") (source (origin (method url-fetch) (uri (cran-uri "rgdal" version)) (sha256 - (base32 "18k1w8cb77h4mw1m5b21r0fng40arb1md24fyriv83ccz8n46m3z")))) + (base32 "1vbkyhw8nd7dw1r53qisphav31x6zvpbzilvnlvbjbj9hzhs90s5")))) (properties `((upstream-name . "rgdal"))) (build-system r-build-system) (inputs @@ -20599,13 +20955,13 @@ programming problems.") (define-public r-desolve (package (name "r-desolve") - (version "1.30") + (version "1.32") (source (origin (method url-fetch) (uri (cran-uri "deSolve" version)) (sha256 - (base32 "0j7mmg1mimdpql8f4i9dn920ciyyq80a5qnc4fq5xn5lyrx5vxir")))) + (base32 "1bfr4w760nr7mjhpmf32z39swr6isnn1665cld2d1pdgx8b0yrvl")))) (properties `((upstream-name . "deSolve"))) (build-system r-build-system) (native-inputs @@ -20628,13 +20984,13 @@ to ODEs by numerical differencing.") (define-public r-pmcmrplus (package (name "r-pmcmrplus") - (version "1.9.3") + (version "1.9.4") (source (origin (method url-fetch) (uri (cran-uri "PMCMRplus" version)) (sha256 - (base32 "00sgk4c7vpmbfifrsbqd5gh7hwdpm8kymlpnnrdzlhvkymhbmfkn")))) + (base32 "16m1pdrzjq9vnx5v7zv56mz9r1205rkw92883cxaqbvdpds6dhqy")))) (properties `((upstream-name . "PMCMRplus"))) (build-system r-build-system) (inputs (list gmp)) @@ -20675,14 +21031,14 @@ porting.") (define-public r-subplex (package (name "r-subplex") - (version "1.7") + (version "1.8") (source (origin (method url-fetch) (uri (cran-uri "subplex" version)) (sha256 (base32 - "11zqzydbj6ivgvlw1gv1r2yxra7misbc622g575p2vckhjjg9v6m")))) + "19g5bd39gmcn27xdsklkzxg99x1r5v5q8zcw1iwry31qj24ivhrv")))) (build-system r-build-system) (native-inputs (list gfortran)) @@ -21283,18 +21639,18 @@ elicitation options based on Kass and Vaidyanathan (1992) (define-public r-reldist (package (name "r-reldist") - (version "1.7-0") + (version "1.7-1") (source (origin (method url-fetch) (uri (cran-uri "reldist" version)) (sha256 (base32 - "0i04d6w3r6fzm4bykz6lnnh6dngmd61v5wlpli70r3fzdzhi7fji")))) + "17kbqqapqmckghv7jizibmicv3bzbycfr3mz4xg3yjp3c2bap4r6")))) (properties `((upstream-name . "reldist"))) (build-system r-build-system) (propagated-inputs - (list r-densestbayes r-hmisc r-mgcv)) + (list r-densestbayes r-mgcv)) (home-page "http://www.stat.ucla.edu/~handcock/RelDist") (synopsis "Relative distribution methods") (description @@ -21310,14 +21666,14 @@ Social Sciences\" by Mark S. Handcock and Martina Morris, Springer-Verlag, (define-public r-accept (package (name "r-accept") - (version "0.8.3") + (version "0.9.0") (source (origin (method url-fetch) (uri (cran-uri "accept" version)) (sha256 (base32 - "0qn4lm6bk0z2iijwsfbymx1c9y39988fw124ncgmlrgw5kv80b7x")))) + "13kx8fbnbpasjklgbq2rf4n73j2s8rvy5v77ywqhfzln24937qgh")))) (properties `((upstream-name . "accept"))) (build-system r-build-system) (propagated-inputs @@ -21455,14 +21811,14 @@ data.") (define-public r-mda (package (name "r-mda") - (version "0.5-2") + (version "0.5-3") (source (origin (method url-fetch) (uri (cran-uri "mda" version)) (sha256 (base32 - "1hq0zhhz9klmp4zcr1w8hyn7s1h9kfg57d2l2mfm7psx459j0krl")))) + "0qw4scc2w7jmnxssj5w2mdxb9rrl4dscqn54gplzm1gk2yf419mx")))) (properties `((upstream-name . "mda"))) (build-system r-build-system) (propagated-inputs (list r-class)) @@ -21522,23 +21878,21 @@ and mixture of Gaussian models.") (define-public r-accsda (package (name "r-accsda") - (version "1.0.0") + (version "1.1.1") (source (origin (method url-fetch) (uri (cran-uri "accSDA" version)) (sha256 (base32 - "0sgxy5y8kkc1n35657kifwfjsba7y5m1vbr7rkk5lmbpkzahqm61")))) + "104xdz63mnibh6827xm0pfr9zbhbi2a7iw4m1x27xjqi7zqvbky6")))) (properties `((upstream-name . "accSDA"))) (build-system r-build-system) (propagated-inputs (list r-ggplot2 r-ggthemes r-gridextra - r-mass - r-rarpack - r-sparselda)) + r-mass)) (home-page "https://github.com/gumeo/accSDA/wiki") (synopsis "Accelerated sparse discriminant analysis") (description @@ -21626,20 +21980,18 @@ and prints vectorized images.") (define-public r-randtoolbox (package (name "r-randtoolbox") - (version "1.31.1") + (version "2.0.0") (source (origin (method url-fetch) (uri (cran-uri "randtoolbox" version)) (sha256 (base32 - "1b9vjzqg014hxp1vfb62m01d7xim5vmpbyxzlbll49bqas0jx69h")))) + "005x2igljc6vm0nsmkld9aqjqz1ccwapc8z3aw5c3ivh4n2bghf9")))) (properties `((upstream-name . "randtoolbox"))) (build-system r-build-system) (propagated-inputs (list r-rngwell)) - (native-inputs - (list gfortran)) (home-page "https://cran.r-project.org/web/packages/randtoolbox/") (synopsis "Toolbox for pseudo and quasi random number generation") (description @@ -21663,14 +22015,14 @@ See e.g. Gentle (2003) @url{doi:10.1007/b97336}.") (define-public r-lhs (package (name "r-lhs") - (version "1.1.4") + (version "1.1.5") (source (origin (method url-fetch) (uri (cran-uri "lhs" version)) (sha256 (base32 - "1dim6pw2vjvsk269dff5bzpnyh9rp4qa9gj8y61bd31384q5c92c")))) + "0fb3bc3s5pbwg92qkjbg7v8ah36wm6qs05vf098hwjakr7f6yg3s")))) (properties `((upstream-name . "lhs"))) (build-system r-build-system) (propagated-inputs (list r-rcpp)) @@ -21786,14 +22138,14 @@ models.") (define-public r-gamlss (package (name "r-gamlss") - (version "5.4-1") + (version "5.4-3") (source (origin (method url-fetch) (uri (cran-uri "gamlss" version)) (sha256 (base32 - "0fp9bmgykpqd950bk58dk423iy5r1fm3dy2gw0cwwmgivpq2lx0q")))) + "0xih19zqgpjl5qv5j38ana6x29y84shn2jfl2lk4kaw3q7yx86b6")))) (properties `((upstream-name . "gamlss"))) (build-system r-build-system) (propagated-inputs @@ -22095,14 +22447,14 @@ provided as well.") (define-public r-tuner (package (name "r-tuner") - (version "1.3.3.1") + (version "1.4.0") (source (origin (method url-fetch) (uri (cran-uri "tuneR" version)) (sha256 (base32 - "12nixpqrc5gp7p2clr7ia6jwb0jq2i3brlxiwlp00ixmnm5g1jyd")))) + "1sd0drxzbdy71bh35fccg9ajhpdhdpy0m9nja2lw82p1pzhyl7jn")))) (properties `((upstream-name . "tuneR"))) (build-system r-build-system) (propagated-inputs (list r-signal)) @@ -22221,14 +22573,14 @@ both exponential and logistic loss on a given data set.") (define-public r-genalg (package (name "r-genalg") - (version "0.2.0") + (version "0.2.1") (source (origin (method url-fetch) (uri (cran-uri "genalg" version)) (sha256 (base32 - "1wzfamq8k5yhwbdx0wy1w5bks93brj0p890xxc4yqrja4w38ja3s")))) + "1y4qz1s85zpd1r3259gr542arssf2vpd4drhy0wnq5q47ignrvna")))) (properties `((upstream-name . "genalg"))) (build-system r-build-system) (home-page "https://github.com/egonw/genalg") @@ -22306,13 +22658,13 @@ management} (aCRM).") (define-public r-tree (package (name "r-tree") - (version "1.0-41") + (version "1.0-42") (source (origin (method url-fetch) (uri (cran-uri "tree" version)) (sha256 (base32 - "13jwdxx3na16mly176n01zdkaqn4a8x9fc43rq5xx5vx31drkkr1")))) + "1q3jgkhl5d4d8c396cyvkw60094p0z0a3x7xwhdbi8gl4c2c65ss")))) (build-system r-build-system) (home-page "https://cran.r-project.org/web/packages/tree/") (synopsis "Classification and regression trees") @@ -22498,14 +22850,14 @@ R\" (ISBN 978-1-119-15272-9.)") (define-public r-alabama (package (name "r-alabama") - (version "2015.3-1") + (version "2022.4-1") (source (origin (method url-fetch) (uri (cran-uri "alabama" version)) (sha256 (base32 - "0mlgk929gdismikwx4k2ndqq57nnqj7mlgvd3479b214hksgq036")))) + "0v6kl6ndm8wvp9xzya3x4gj5kh03qgx13x5vyzn410wsndcjiim8")))) (properties `((upstream-name . "alabama"))) (build-system r-build-system) (propagated-inputs (list r-numderiv)) @@ -22736,18 +23088,20 @@ variable observed over time.") (define-public r-fda (package (name "r-fda") - (version "5.5.1") + (version "6.0.3") (source (origin (method url-fetch) (uri (cran-uri "fda" version)) (sha256 (base32 - "0fm2vswc8fdi2p1axby0hjwh8m6lc1zrdikrpiamilr6w9m2zanw")))) + "1lvp4i4hqz650k27sa5flbdlkalihc79xy9128hfhr16h6wi8n10")))) (properties `((upstream-name . "fda"))) (build-system r-build-system) (propagated-inputs - (list r-desolve r-fds r-matrix)) + (list r-desolve r-fds)) + (native-inputs + (list r-knitr)) (home-page "https://www.functionaldata.org") (synopsis "Functional data analysis") (description @@ -22943,14 +23297,14 @@ communities\" by MS Johnson (1926) @url{doi:10.2307/1373575}.") (define-public r-expint (package (name "r-expint") - (version "0.1-6") + (version "0.1-7") (source (origin (method url-fetch) (uri (cran-uri "expint" version)) (sha256 (base32 - "0iai25cglcdnf44d2d1fz1xpw4q600my4zq4493fk4cs5673mlf7")))) + "01d0a7pc4qx7044a0cymnv5ld88r90vdvlqjbnzg9qlfbizdgyvw")))) (properties `((upstream-name . "expint"))) (build-system r-build-system) (home-page "https://gitlab.com/vigou3/expint") @@ -22966,14 +23320,14 @@ API; see the package vignette for details.") (define-public r-actuar (package (name "r-actuar") - (version "3.2-1") + (version "3.2-2") (source (origin (method url-fetch) (uri (cran-uri "actuar" version)) (sha256 (base32 - "1avqgkls4xvwgfr6j7g2f7p474rlpi82q5aksw8nzf8wcyp7592f")))) + "0dhpaivyga0jwvw1csagbx74biy9jfkw4a8sa871579njxl1x7p1")))) (properties `((upstream-name . "actuar"))) (build-system r-build-system) (propagated-inputs (list r-expint)) @@ -23099,14 +23453,14 @@ it may be seen by an animal with less acute vision.") (define-public r-caret (package (name "r-caret") - (version "6.0-91") + (version "6.0-92") (source (origin (method url-fetch) (uri (cran-uri "caret" version)) (sha256 (base32 - "1kbx51cf71z2x19a0jflwnhx5jd9wk9q9203kzdxlqw5izdjvmdz")))) + "048mp325ndfl83a8p4dkd1b6zh5bws4gg9kxka5ss8qsj8m4m08x")))) (build-system r-build-system) (propagated-inputs (list r-e1071 @@ -23309,14 +23663,14 @@ Johnson-Graybill, LBI, Tusell and modified Tukey non-additivity tests.") (define-public r-flexclust (package (name "r-flexclust") - (version "1.4-0") + (version "1.4-1") (source (origin (method url-fetch) (uri (cran-uri "flexclust" version)) (sha256 (base32 - "0x7wxk8y46ndyz6fdacym0rd6p9wh3pcfr28chjcg5d7fm849zl2")))) + "13akk3w6a76jpws5v9108c3hdmb8i6gm0sc06lr2hqly0pgpfyfn")))) (properties `((upstream-name . "flexclust"))) (build-system r-build-system) (propagated-inputs @@ -23730,14 +24084,14 @@ Francesca Mazzia (2012).") (define-public r-lim (package (name "r-lim") - (version "1.4.6") + (version "1.4.7") (source (origin (method url-fetch) (uri (cran-uri "LIM" version)) (sha256 (base32 - "03x1gnm06bw1wrzc01110bjzd2mvjdzbc2mbrazh22jrmb32w5d8")))) + "0d9bgyd0mnag8wds993dsvlbpkhyakydlzwc3nghxzv2n8504hjj")))) (properties `((upstream-name . "LIM"))) (build-system r-build-system) (propagated-inputs @@ -23777,14 +24131,14 @@ automatically show a loader when the output is (re)calculating.") (define-public r-rsvg (package (name "r-rsvg") - (version "2.2.0") + (version "2.3.1") (source (origin (method url-fetch) (uri (cran-uri "rsvg" version)) (sha256 (base32 - "05mvi1ijnxayyj1f4p8nb56pncmm7x0sbq0d87asv7c7kw765n1a")))) + "096w4d1gvfc65d4jg7ykp23k9f7cf7f8zvzfhvhd7qkfsbjpxqkj")))) (properties `((upstream-name . "rsvg"))) (build-system r-build-system) (inputs @@ -24508,13 +24862,13 @@ actuarial models such as pension mathematics.") (define-public r-matrixextra (package (name "r-matrixextra") - (version "0.1.9-1") + (version "0.1.10") (source (origin (method url-fetch) (uri (cran-uri "MatrixExtra" version)) (sha256 - (base32 "098apgqlncgxspa8mi4bx2nk5fbk3880whqiwkvydsfsqrbv1sj0")))) + (base32 "00f6sgw6p2709gs3df68yr59nvsr429pk9xql71id3kachjzh618")))) (properties `((upstream-name . "MatrixExtra"))) (build-system r-build-system) (propagated-inputs @@ -24552,14 +24906,14 @@ package by providing: (define-public r-sem (package (name "r-sem") - (version "3.1-14") + (version "3.1-15") (source (origin (method url-fetch) (uri (cran-uri "sem" version)) (sha256 (base32 - "18m54hjl3w57n4ygnkcy80w0dc9dz1zvavjqh9sl6nqs52f9m246")))) + "05hk72zxvyv6kkjhk5y6qw253c64108az7030z8j1sz8wq03n0md")))) (properties `((upstream-name . "sem"))) (build-system r-build-system) (propagated-inputs @@ -24576,14 +24930,14 @@ least squares.") (define-public r-semtools (package (name "r-semtools") - (version "0.5-5") + (version "0.5-6") (source (origin (method url-fetch) (uri (cran-uri "semTools" version)) (sha256 (base32 - "1dpsn43ifvfy5v8w2fqdy54yclmy0d3qlzix67lflr2r7isq7y6x")))) + "1wnakz76c4mgkwvx3iycmvgrzqys860jg9zpkba0ln5c08ycw8pm")))) (properties `((upstream-name . "semTools"))) (build-system r-build-system) (propagated-inputs @@ -24750,14 +25104,14 @@ importation and recoding.") (define-public r-rockchalk (package (name "r-rockchalk") - (version "1.8.151") + (version "1.8.152") (source (origin (method url-fetch) (uri (cran-uri "rockchalk" version)) (sha256 (base32 - "17mfaxn3gj0vac5wdmsjj2z2668cszbpvan7hnxp7ic9bvsm1w2y")))) + "1d15jlgcy35pvaicaddd4zrhwm5ajb9yc3jk6dyxm99gc5wcn6h3")))) (properties `((upstream-name . "rockchalk"))) (build-system r-build-system) (propagated-inputs @@ -24777,14 +25131,14 @@ fairly comprehensive overview.") (define-public r-lisreltor (package (name "r-lisreltor") - (version "0.1.4") + (version "0.1.5") (source (origin (method url-fetch) (uri (cran-uri "lisrelToR" version)) (sha256 (base32 - "0zicq0z3hhixan1p1apybnf3v5s6v6ysll4pcz8ivygwr2swv3p5")))) + "0i51v0x87277ly0kggdd594w6q4zq62b4n7xs9r25j08bzs82nfk")))) (properties `((upstream-name . "lisrelToR"))) (build-system r-build-system) (home-page "https://cran.r-project.org/package=lisrelToR") @@ -24797,18 +25151,20 @@ output in R.") (define-public r-bdgraph (package (name "r-bdgraph") - (version "2.64") + (version "2.67") (source (origin (method url-fetch) (uri (cran-uri "BDgraph" version)) (sha256 (base32 - "0pnzbw09c7amsvj8l4p1jnmss4rkbr1dsmagiygh8lj5fbrklgr4")))) + "0s2j4462zlgyjnqvvvxg4lynhmwwnjaw1cr1chzmagfvaj94qhhz")))) (properties `((upstream-name . "BDgraph"))) (build-system r-build-system) (propagated-inputs (list r-igraph)) + (native-inputs + (list r-knitr)) (home-page "https://www.uva.nl/profile/a.mohammadi") (synopsis "Bayesian structure learning in graphical models") (description @@ -24923,14 +25279,14 @@ translated to input syntax for the R packages @code{sem} and @code{lavaan}.") (define-public r-cdm (package (name "r-cdm") - (version "7.5-15") + (version "8.1-12") (source (origin (method url-fetch) (uri (cran-uri "CDM" version)) (sha256 (base32 - "159ny2dz0rf1r3k1mqlfwambffc8rx425sggf5bn51nybpzanq3l")))) + "1cnk19k09cj81ic43rwbvcalvczfca4ncdyy8r1gyc8fzf2glb0i")))) (properties `((upstream-name . "CDM"))) (build-system r-build-system) (propagated-inputs @@ -24954,14 +25310,14 @@ well as Ravand and Robitzsch (2015).") (define-public r-tam (package (name "r-tam") - (version "3.7-16") + (version "4.0-16") (source (origin (method url-fetch) (uri (cran-uri "TAM" version)) (sha256 (base32 - "1969xm1f7s183h0xnd4g1bxhjp80rl7kad29zwcig0fmw6bs2mpd")))) + "00ww277hsyci5rph4gb155h0y95dmjhqgn9amz6g8zbrjb2748dw")))) (properties `((upstream-name . "TAM"))) (build-system r-build-system) (propagated-inputs @@ -25011,18 +25367,20 @@ elimination, and a simulation module for various binary data matrices.") (define-public r-irtoys (package (name "r-irtoys") - (version "0.2.1") + (version "0.2.2") (source (origin (method url-fetch) (uri (cran-uri "irtoys" version)) (sha256 (base32 - "0h6iiaxikhbxhbyksbjnb09qdxinlkwr2v9yzs5wslbni14paq5q")))) + "1qshz6czykgf53mq6xiswzv5xsjwrkrinpfkf1yavql4v08hs82b")))) (properties `((upstream-name . "irtoys"))) (build-system r-build-system) (propagated-inputs (list r-ltm r-sm)) + (native-inputs + (list r-knitr)) (home-page "https://cran.r-project.org/package=irtoys") (synopsis "Collection of functions related to Item Response Theory (IRT)") (description @@ -25078,14 +25436,14 @@ interesting features. iheatmapr uses the plotly library for interactivity.") (define-public r-packrat (package (name "r-packrat") - (version "0.7.0") + (version "0.8.0") (source (origin (method url-fetch) (uri (cran-uri "packrat" version)) (sha256 (base32 - "1hnwhdgqljqs3m7c4rjlyndyc0k85jpa4rbfymxkm3zjg3yy3g78")))) + "1vs4i19x6jdwl3jnanp127k4hk80h1mj56cjn07w1gkl542vj99h")))) (properties `((upstream-name . "packrat"))) (build-system r-build-system) (home-page "https://github.com/rstudio/packrat/") @@ -25244,14 +25602,14 @@ using the @code{rstan} and @code{rstanarm} packages).") (define-public r-rstantools (package (name "r-rstantools") - (version "2.1.1") + (version "2.2.0") (source (origin (method url-fetch) (uri (cran-uri "rstantools" version)) (sha256 (base32 - "0b9x8rzj3dr4m7yjx476nn42z22xd1xnw85m9frfwxy5ivg1any9")))) + "1dsfgi02hps878n3vimfdbzpm4gr5n3ccrmnc61ncrqcp6p0p0fb")))) (properties `((upstream-name . "rstantools"))) (build-system r-build-system) (inputs (list pandoc)) @@ -25272,13 +25630,13 @@ recommendations for developers.") (define-public r-loo (package (name "r-loo") - (version "2.4.1") + (version "2.5.1") (source (origin (method url-fetch) (uri (cran-uri "loo" version)) (sha256 - (base32 "0l2v8zpashqbnck3qx5lp1gqjcfphzky8mxyw5gfk9wk99mzn8dw")))) + (base32 "1wa5hxk7lkr88mway6b7xd5arrkkl2ldl9rf0v1nqwp8lia2ysl6")))) (properties `((upstream-name . "loo"))) (build-system r-build-system) (inputs @@ -25304,14 +25662,14 @@ techniques to average Bayesian predictive distributions.") (define-public r-rstan (package (name "r-rstan") - (version "2.21.3") + (version "2.21.5") (source (origin (method url-fetch) (uri (cran-uri "rstan" version)) (sha256 (base32 - "1ccjdwh0xspna2c0m5p8as8y2b0lnhdyk9hfd3jh58j6n8fbzg3n")))) + "1smr5cjrqvpdnkmjpjp73p96sy581x15mwrn4fqd1p4d5mbgxr46")))) (properties `((upstream-name . "rstan"))) (build-system r-build-system) (arguments @@ -25354,14 +25712,14 @@ need to derive the partial derivatives.") (define-public r-rstanarm (package (name "r-rstanarm") - (version "2.21.1") + (version "2.21.3") (source (origin (method url-fetch) (uri (cran-uri "rstanarm" version)) (sha256 (base32 - "04ggzak3f7jaxza3dxyrmxp5b48qcgyspy22ykbhr03g4hzp7jk8")))) + "19rj396q84maxnd9d2xcd5rblg3310xn7sqbd6k18kwf3dvd7wp9")))) (properties `((upstream-name . "rstanarm"))) (build-system r-build-system) (inputs @@ -25396,14 +25754,14 @@ a formula and @code{data.frame} plus some additional arguments for priors.") (define-public r-kendall (package (name "r-kendall") - (version "2.2") + (version "2.2.1") (source (origin (method url-fetch) (uri (cran-uri "Kendall" version)) (sha256 (base32 - "0z2yr3x2nvdm81w2imb61hxwcbmg14kfb2bxgh3wmkmv3wfjwkwn")))) + "1xmk95l4i3kj9jn0xh1chi2rj322k29jq14ra5pa7316gwf9vx2m")))) (properties `((upstream-name . "Kendall"))) (build-system r-build-system) (propagated-inputs @@ -26236,14 +26594,14 @@ estimation.") (define-public r-optimx (package (name "r-optimx") - (version "2021-10.12") + (version "2022-4.30") (source (origin (method url-fetch) (uri (cran-uri "optimx" version)) (sha256 (base32 - "0hvrpfya767vp3anmb8ih516v4zz1sv4h193rn93kyjydf2lqf1r")))) + "045ls1vl1392ihwln6mngz0zg2w93ym1m607vfrg8v1949x8isgb")))) (properties `((upstream-name . "optimx"))) (build-system r-build-system) (propagated-inputs (list r-numderiv)) @@ -26264,14 +26622,14 @@ here.") (define-public r-projpred (package (name "r-projpred") - (version "2.0.2") + (version "2.1.2") (source (origin (method url-fetch) (uri (cran-uri "projpred" version)) (sha256 (base32 - "0nx514mrfh3gv854pr71w5x3zgdnn0kinf5nh7z90q3h7ysry2mg")))) + "1c6gnmknd3vb0fb5h6gd372dk27nzif90b4c1snql49wacg6b2m8")))) (properties `((upstream-name . "projpred"))) (build-system r-build-system) (propagated-inputs @@ -26281,14 +26639,12 @@ here.") r-lme4 r-loo r-magrittr - r-mass r-mgcv - r-optimx + r-mvtnorm r-rcpp r-rcpparmadillo - r-rngtools - r-rstantools - r-tidyverse)) + r-rlang + r-rstantools)) (native-inputs (list r-knitr)) (home-page "https://mc-stan.org/projpred/") (synopsis "Projection predictive feature selection") @@ -26387,14 +26743,14 @@ inference diagnostics. (define-public r-brms (package (name "r-brms") - (version "2.16.3") + (version "2.17.0") (source (origin (method url-fetch) (uri (cran-uri "brms" version)) (sha256 (base32 - "1q93z4cf3iy4rs6pgvph6z7hc8q05iwif76hcg8p4kr6nl82nc38")))) + "0wff5rld4kgkk2nbllvm1h4c596igzgd0q7nx1cabgl11fja7r94")))) (properties `((upstream-name . "brms"))) (build-system r-build-system) (propagated-inputs @@ -26496,14 +26852,14 @@ pies on a map.") (define-public r-scrypt (package (name "r-scrypt") - (version "0.1.3") + (version "0.1.4") (source (origin (method url-fetch) (uri (cran-uri "scrypt" version)) (sha256 (base32 - "14iblgbp9v2by8fjbrpsd59iknp5babcz7j3yv1yxxzcwyb6wrrm")))) + "12q9d4m7flbvlgssvjh1ga4jswkmqjfshf6pna6qk6v087gmzdsj")))) (properties `((upstream-name . "scrypt"))) (build-system r-build-system) (propagated-inputs @@ -26880,14 +27236,14 @@ you can automate browsers locally or remotely.") (define-public r-conquer (package (name "r-conquer") - (version "1.2.2") + (version "1.3.0") (source (origin (method url-fetch) (uri (cran-uri "conquer" version)) (sha256 (base32 - "1z07p4xcrxvnicwgga7hqvqzcxavwirw828285i0xlnz54rqhsc8")))) + "1ynmaf7lgqjb8grsifx5dzy29cd5kz4x3yh0abnl2vxdr4c4wddc")))) (properties `((upstream-name . "conquer"))) (build-system r-build-system) (propagated-inputs @@ -26979,14 +27335,14 @@ simple interface for all functions.") (define-public r-iml (package (name "r-iml") - (version "0.10.1") + (version "0.11.0") (source (origin (method url-fetch) (uri (cran-uri "iml" version)) (sha256 (base32 - "1wz6xqhvqkzj723nw7qrlwb1171wvvpxhv3pa8cq7vcbkiflq37r")))) + "1za7bjnp07i20vyb6vxz2ya5cr8g4p076w61n8m38wnz04lz5yz5")))) (properties `((upstream-name . "iml"))) (build-system r-build-system) (propagated-inputs @@ -26996,7 +27352,6 @@ simple interface for all functions.") r-future r-future-apply r-ggplot2 - r-keras r-metrics r-prediction r-r6)) @@ -27067,14 +27422,14 @@ diagonals. This package allows you to compute the tensor product of arrays.") (define-public r-spatstat-utils (package (name "r-spatstat-utils") - (version "2.3-0") + (version "2.3-1") (source (origin (method url-fetch) (uri (cran-uri "spatstat.utils" version)) (sha256 (base32 - "06nvn2ffyrskhzaavsy6lmdp0m8askkrp1fnwrhjsj01lbjnq2az")))) + "08pybliv4r3v4rcazmlfr4a07sjfhrkmksdmhhq9k185vw4474av")))) (properties `((upstream-name . "spatstat.utils"))) (build-system r-build-system) @@ -27088,14 +27443,14 @@ which may also be useful for other purposes.") (define-public r-spatstat-sparse (package (name "r-spatstat-sparse") - (version "2.1-0") + (version "2.1-1") (source (origin (method url-fetch) (uri (cran-uri "spatstat.sparse" version)) (sha256 (base32 - "148fxbxss569w73xaqpzwpz9rfjdgznh2ngf06gvm33631222680")))) + "00vkvv5pnm82gn7vqnzrrp68y46gbkhdq0hbwqx7nxjvf5lssdcs")))) (properties `((upstream-name . "spatstat.sparse"))) (build-system r-build-system) @@ -27112,14 +27467,14 @@ matrix calculations that are common in statistics, such as quadratic forms.") (define-public r-spatstat-data (package (name "r-spatstat-data") - (version "2.1-2") + (version "2.2-0") (source (origin (method url-fetch) (uri (cran-uri "spatstat.data" version)) (sha256 (base32 - "1r8s4xl25xr71h4g5qqi5y370h2ik3kz5fb4qyml2b6dwsl1ildv")))) + "1rf36zy29h9qabpv19hx84gjdiay7i9y9777d2zn17ahyss3p56k")))) (properties `((upstream-name . "spatstat.data"))) (build-system r-build-system) (propagated-inputs @@ -27134,14 +27489,14 @@ package.") (define-public r-spatstat-geom (package (name "r-spatstat-geom") - (version "2.3-2") + (version "2.4-0") (source (origin (method url-fetch) (uri (cran-uri "spatstat.geom" version)) (sha256 (base32 - "0aihimb4r6hmk3g7764d3b43a0znf9bzmc96i1lkqq9hwabj7151")))) + "0rwysq9a0ylbsr53q5kfh7wjk5mcdji211sc3s8gwzz8ki09mf1j")))) (properties `((upstream-name . "spatstat.geom"))) (build-system r-build-system) (propagated-inputs @@ -27157,14 +27512,14 @@ for the geometry of linear networks.") (define-public r-spatstat-core (package (name "r-spatstat-core") - (version "2.4-0") + (version "2.4-4") (source (origin (method url-fetch) (uri (cran-uri "spatstat.core" version)) (sha256 (base32 - "1dx6fh6l3bqxqfaczm9gxx1sirmdpx8biag462pj9wjqmw9m4j35")))) + "0fyi8y1z919nzn47kaviln7gflhcp5qdi3gfvf7nwkdix3pkk373")))) (properties `((upstream-name . "spatstat.core"))) (build-system r-build-system) (propagated-inputs @@ -27219,13 +27574,13 @@ for spatial data on a linear network.") (define-public r-spatstat-random (package (name "r-spatstat-random") - (version "2.1-0") + (version "2.2-0") (source (origin (method url-fetch) (uri (cran-uri "spatstat.random" version)) (sha256 - (base32 "0ggzl64iqf7b6n81ga66wb01sm4rmzrbimv2pmgy047mjnqsnpq4")))) + (base32 "0kb01s8k67ydcfqcnz3i55vpiksihh4xsg0w2p2bclxxkpdvpw25")))) (properties `((upstream-name . "spatstat.random"))) (build-system r-build-system) (propagated-inputs (list r-spatstat-data r-spatstat-geom r-spatstat-utils)) @@ -27247,14 +27602,14 @@ sampler).") (define-public r-spatstat (package (name "r-spatstat") - (version "2.3-3") + (version "2.3-4") (source (origin (method url-fetch) (uri (cran-uri "spatstat" version)) (sha256 (base32 - "0skk377fw448gvdk6jkcviqbqdjn2vdz19vfk8aiilxax4xba1hr")))) + "1nlrp7660y68axlm4pczc5rxbdhbbac1ylh69azr4swj1gbzi82f")))) (properties `((upstream-name . "spatstat"))) (build-system r-build-system) (propagated-inputs @@ -27666,14 +28021,14 @@ and @url{https://doi.org/10.1093/molbev/msw275,Didelot et al. (2017)}.") (define-public r-km-ci (package (name "r-km-ci") - (version "0.5-2") + (version "0.5-6") (source (origin (method url-fetch) (uri (cran-uri "km.ci" version)) (sha256 (base32 - "1l6kw8jppaa1802yc5pbfwwgac56nhwc9p076ivylhms4w7cdf8v")))) + "18sc9vhbdgks8lhk2nfxkkayh8j4j227hl63fm5p04f7z4wm6wc1")))) (properties `((upstream-name . "km.ci"))) (build-system r-build-system) (propagated-inputs @@ -27711,14 +28066,14 @@ Springer.") (define-public r-survmisc (package (name "r-survmisc") - (version "0.5.5") + (version "0.5.6") (source (origin (method url-fetch) (uri (cran-uri "survMisc" version)) (sha256 (base32 - "00nvvl8gz4477ab24rd0xvfksm8msv8h021b9ld5c9cizc41n2bm")))) + "014cf7sfndmib9jmj0p3h67sr750k2pvw7m865zwdpvlqddi44fr")))) (properties `((upstream-name . "survMisc"))) (build-system r-build-system) (propagated-inputs @@ -27744,14 +28099,14 @@ the @code{survival} package.") (define-public r-exactranktests (package (name "r-exactranktests") - (version "0.8-34") + (version "0.8-35") (source (origin (method url-fetch) (uri (cran-uri "exactRankTests" version)) (sha256 (base32 - "1i4mwz61mjlh1ai3dww2pjkicx9ww8c4mljnr8xlawh91479lva9")))) + "1qv9i57chhz8xiv0j8r47rbigyqs72fa7ssz99inyc0s8gzskd3y")))) (properties `((upstream-name . "exactRankTests"))) (build-system r-build-system) @@ -27924,7 +28279,7 @@ geometric models.") (native-inputs (list r-knitr)) (home-page "https://github.com/JiaxiangBU/add2ggplot") (synopsis "Extension for ggplot2") - (description "This packages provides tools to create themes and color + (description "This package provides tools to create themes and color palettes for the package ggplot2.") (license license:expat))) @@ -27954,14 +28309,14 @@ model.") (define-public r-igraph (package (name "r-igraph") - (version "1.2.11") + (version "1.3.1") (source (origin (method url-fetch) (uri (cran-uri "igraph" version)) (sha256 (base32 - "1ph042yinl8ig2x7laha5j1xr14fky9771l5ha87svhynrg732qw")))) + "0khl87ncc9hkvx4f1kyzv7w7bg9zbyd1rk20ja3azkhpqjkjnnjh")))) (build-system r-build-system) (native-inputs (list gfortran)) @@ -27981,19 +28336,18 @@ more.") (define-public r-workflows (package (name "r-workflows") - (version "0.2.4") + (version "0.2.6") (source (origin (method url-fetch) (uri (cran-uri "workflows" version)) (sha256 (base32 - "1sxrgza922p137z41jcj2iwk19lxzwh6kp4kz7h9kw0b8rvfqwab")))) + "0xhc1j25fjipw8hvcpdbvfm640kp0flwvifj5f7g4n6b3wb8cm6a")))) (properties `((upstream-name . "workflows"))) (build-system r-build-system) (propagated-inputs (list r-cli - r-ellipsis r-generics r-glue r-hardhat @@ -28255,14 +28609,14 @@ Design} (SFD) and to test their quality.") (define-public r-dials (package (name "r-dials") - (version "0.1.0") + (version "0.1.1") (source (origin (method url-fetch) (uri (cran-uri "dials" version)) (sha256 (base32 - "02i9ddzi7gk5bwg87x8bpazk89mn102awgxzp9yw85dgbafqsydh")))) + "1h695g9vklqn0vd53j9k03s0989xjpjr11h5qhz3a0v6465fwm8a")))) (properties `((upstream-name . "dials"))) (build-system r-build-system) (propagated-inputs @@ -28289,14 +28643,14 @@ for creating, simulating, or validating values for such parameters.") (define-public r-tune (package (name "r-tune") - (version "0.1.6") + (version "0.2.0") (source (origin (method url-fetch) (uri (cran-uri "tune" version)) (sha256 (base32 - "1356w98ljiay8fwa7narr7j5hfbvi69gy03gr7kqiwnfglyksrza")))) + "05gxlsaqv6sjk11r5g4nkdd6hlb3bnfmc29cx4vln1blha37jx4i")))) (properties `((upstream-name . "tune"))) (build-system r-build-system) (propagated-inputs @@ -28333,14 +28687,14 @@ methods, and post-processing steps.") (define-public r-workflowsets (package (name "r-workflowsets") - (version "0.1.0") + (version "0.2.1") (source (origin (method url-fetch) (uri (cran-uri "workflowsets" version)) (sha256 (base32 - "0596hb17mshpag3vjy2wl6fi2mdw54i9gc5za10vzy8vpkigb9jy")))) + "0q42nhnw0mbivadcfb07v71fp39x8fcnjipvn5l5yhjzc56cfxi8")))) (properties `((upstream-name . "workflowsets"))) (build-system r-build-system) (propagated-inputs @@ -28413,14 +28767,14 @@ models without involving a test set.") (define-public r-tidypredict (package (name "r-tidypredict") - (version "0.4.8") + (version "0.4.9") (source (origin (method url-fetch) (uri (cran-uri "tidypredict" version)) (sha256 (base32 - "0fff349pkksss8h1k2qza78l81ha6avx63pxziv6dfa8h62qmrdy")))) + "0x0r36zvny4rqgndx7iqh39yhr53gl4d8wd8wpvdcgg35q6z02z2")))) (properties `((upstream-name . "tidypredict"))) (build-system r-build-system) (propagated-inputs @@ -28534,14 +28888,14 @@ vignettes in all common formats.") (define-public r-tidytext (package (name "r-tidytext") - (version "0.3.2") + (version "0.3.3") (source (origin (method url-fetch) (uri (cran-uri "tidytext" version)) (sha256 (base32 - "0as7lscjl6ywk85almmb4f71vxmgkfds46g52ryggkg2isksvq3g")))) + "0kljaxyhhzbcv9jkjdy0wn6gkamh25y2xfb9k11sqhz3lv72nfvm")))) (properties `((upstream-name . "tidytext"))) (build-system r-build-system) (propagated-inputs @@ -28569,14 +28923,14 @@ analysis using @code{dplyr}, @code{ggplot2}, and other Tidy tools.") (define-public r-parsnip (package (name "r-parsnip") - (version "0.2.0") + (version "0.2.1") (source (origin (method url-fetch) (uri (cran-uri "parsnip" version)) (sha256 (base32 - "0g213c91lzwq9hd22yxkj3igqw04czncnbc4jddnpghp4gpfn1kn")))) + "195i4j38mljv9193yx8lmh65h85yhc52y9vc1mk8zvxi52ks1yln")))) (properties `((upstream-name . "parsnip"))) (build-system r-build-system) (propagated-inputs @@ -28689,14 +29043,14 @@ use.") (define-public r-tidymodels (package (name "r-tidymodels") - (version "0.1.4") + (version "0.2.0") (source (origin (method url-fetch) (uri (cran-uri "tidymodels" version)) (sha256 (base32 - "18krycdn0h1i8swrq6bgj8qnb200rr0pqhr6maq3h1jc66x0y7nd")))) + "1xkv4s4kn7k9137svb39zrm5302gxpxyp1jv5bb6z0xrvj5wwa4i")))) (properties `((upstream-name . "tidymodels"))) (build-system r-build-system) (propagated-inputs @@ -28722,7 +29076,7 @@ use.") r-workflowsets r-yardstick)) (native-inputs - (list r-knitr r-rmarkdown pandoc)) + (list r-knitr)) (home-page "https://github.com/tidymodels/tidymodels") (synopsis "Tidy collection for modeling and statistical analysis") (description @@ -28734,14 +29088,14 @@ data structures of the tidyverse.") (define-public r-lsa (package (name "r-lsa") - (version "0.73.2") + (version "0.73.3") (source (origin (method url-fetch) (uri (cran-uri "lsa" version)) (sha256 (base32 - "1a33irqa6qvbc02z12rgbgv8kxq2gmahy7j5bg8b23lvvaxif06b")))) + "16k1g0kh3yaw7azg76aqf3hn3b6jgqg92xx0syai8l0my9ci2zzh")))) (properties `((upstream-name . "lsa"))) (build-system r-build-system) (propagated-inputs @@ -28760,14 +29114,14 @@ this variability problem can be overcome.") (define-public r-mlecens (package (name "r-mlecens") - (version "0.1-4") + (version "0.1-5") (source (origin (method url-fetch) (uri (cran-uri "MLEcens" version)) (sha256 (base32 - "0zlmrcjraypscgs2v0w4s4hm7qccsmaz4hjsgqpn0058vx622945")))) + "0cdl0y44clds4sg8hikhk354a5xrfbyfg8lxrbh1bfg410rkj186")))) (properties `((upstream-name . "MLEcens"))) (build-system r-build-system) (home-page "http://stat.ethz.ch/~maathuis/") @@ -28823,14 +29177,14 @@ phylogenetic relatedness) can also be conducted.") (define-public r-altmeta (package (name "r-altmeta") - (version "3.3") + (version "4.0") (source (origin (method url-fetch) (uri (cran-uri "altmeta" version)) (sha256 (base32 - "1xq12hnzxh7kgv2i36xprg4lkvqfmxwz3sq4a1jlq2d5g3narvcm")))) + "17cyiydf4n5j64izj7jph2v43h4x9kfd5b0x6m0ik5ci2aw8xzr5")))) (properties `((upstream-name . "altmeta"))) (build-system r-build-system) (propagated-inputs @@ -29002,18 +29356,26 @@ data to rasters. It speeds up plotting of data with millions of points.") (define-public r-seuratobject (package (name "r-seuratobject") - (version "4.0.4") + (version "4.1.0") (source (origin (method url-fetch) (uri (cran-uri "SeuratObject" version)) (sha256 (base32 - "1308hjbs8br3gp9vwm65awgp6vimwgi2jyl1ryn96l84savn2ljq")))) + "018anas8a9m3kh9jn5370v64d93k64z3iic13a75hp6r7g5hd94w")))) (properties `((upstream-name . "SeuratObject"))) (build-system r-build-system) (propagated-inputs - (list r-matrix r-rcpp r-rcppeigen r-rlang)) + (list r-future + r-future-apply + r-matrix + r-progressr + r-rcpp + r-rcppeigen + r-rgeos + r-rlang + r-sp)) (home-page "https://satijalab.org/seurat") (synopsis "Data structures for single cell data") (description @@ -29027,13 +29389,13 @@ other R users.") (define-public r-seurat (package (name "r-seurat") - (version "4.1.0") + (version "4.1.1") (source (origin (method url-fetch) (uri (cran-uri "Seurat" version)) (sha256 (base32 - "0p9i3fnkqa3vranr7c7ckzp1kq42d7p0gcfi9ml4kr334yd84195")))) + "1klamxk6dj0jgpfwll5frcnj9h8lh8c5fxdn9ky7h8xk35lsj6i0")))) (properties `((upstream-name . "Seurat"))) (build-system r-build-system) (propagated-inputs @@ -29297,13 +29659,13 @@ Journal of Statistical Software, 39(10), 1-24.") (define-public r-densestbayes (package (name "r-densestbayes") - (version "1.0-2") + (version "1.0-2.1") (source (origin (method url-fetch) (uri (cran-uri "densEstBayes" version)) (sha256 - (base32 "16fb7vkic9q5p8s4f0f215zmb36fcizqr4r2vm9dxxj9rasrg2f3")))) + (base32 "1pzmgn65lv91zg1588qhwczy9f2zgciknlc4l072mvh2i7hncw2b")))) (properties `((upstream-name . "densEstBayes"))) (build-system r-build-system) (propagated-inputs @@ -29352,14 +29714,14 @@ kernel estimators.") (define-public r-lpme (package (name "r-lpme") - (version "1.1.2") + (version "1.1.3") (source (origin (method url-fetch) (uri (cran-uri "lpme" version)) (sha256 (base32 - "1b0w5ji8hjayni1sh5id193cmanf6n11p16fijkxln4sv4lks4aw")))) + "1ch11cwjci98m7952p9wdsh9fj5y1mjya6ayq0q4wmbm824qfpzb")))) (properties `((upstream-name . "lpme"))) (build-system r-build-system) (propagated-inputs @@ -29516,13 +29878,13 @@ package also supersedes the package @code{BBmisc}.") (define-public r-mlr3pipelines (package (name "r-mlr3pipelines") - (version "0.4.0") + (version "0.4.1") (source (origin (method url-fetch) (uri (cran-uri "mlr3pipelines" version)) (sha256 (base32 - "0913f67c1r9bi68gxh1prsp0vch21bl6plahnvjrlbq8rrs1sr6p")))) + "1zz55i8c08znxpcs6gp5inaw96c6la9wnsla0972ankvj1hsrcr2")))) (build-system r-build-system) (propagated-inputs (list r-backports @@ -29579,13 +29941,13 @@ performing ordinal regression.") (define-public r-paradox (package (name "r-paradox") - (version "0.8.0") + (version "0.9.0") (source (origin (method url-fetch) (uri (cran-uri "paradox" version)) (sha256 (base32 - "1jfzbpqi1rp3r8hnk37dqwggp48ha5bnilmdz7dwzfdaskssycxa")))) + "0fzq59903fklgj3kblnpzasy13a82s72c1qjsy7d1m0fyj28ahdw")))) (build-system r-build-system) (propagated-inputs (list r-backports r-checkmate r-data-table r-mlr3misc r-r6)) @@ -29637,13 +29999,13 @@ computational operations, add-on packages provide additional functionality.") (define-public r-mlr3learners (package (name "r-mlr3learners") - (version "0.5.2") + (version "0.5.3") (source (origin (method url-fetch) (uri (cran-uri "mlr3learners" version)) (sha256 (base32 - "1d9hcrnj622ynrzg0ii0fkhz2n66ip46yln21jq1pwpwkqwqzv35")))) + "088i2piv7sgxsvc7jyr6mq53vqf8yjdlrysgqphsryq6k50i00zd")))) (build-system r-build-system) (propagated-inputs (list r-checkmate @@ -29664,14 +30026,14 @@ vector machines, and gradient boosting.") (define-public r-bbotk (package (name "r-bbotk") - (version "0.5.1") + (version "0.5.3") (source (origin (method url-fetch) (uri (cran-uri "bbotk" version)) (sha256 (base32 - "1171vcs96j8f4n0rjsbbiscs4nxgd4209lr9biy99lvhjvjdsfsm")))) + "13qj8qysqismv9k9rfw770r7w8jdaw82n71k7sp3wsrlhxjxw734")))) (properties `((upstream-name . "bbotk"))) (build-system r-build-system) (propagated-inputs @@ -29694,13 +30056,13 @@ annealing.") (define-public r-mlr3tuning (package (name "r-mlr3tuning") - (version "0.12.1") + (version "0.13.1") (source (origin (method url-fetch) (uri (cran-uri "mlr3tuning" version)) (sha256 (base32 - "0qly6bsfazqcf0a7c2a6k3wghczm8v1fxw9pxa76gpw51x2j2ld0")))) + "0jfslx6pwk408ydn69grrvsp22jd7gsjmwvss0a1j0zav3q1pvks")))) (build-system r-build-system) (propagated-inputs (list r-bbotk @@ -29869,14 +30231,14 @@ unit tests of graphics).") (define-public r-vdiffr (package (name "r-vdiffr") - (version "1.0.2") + (version "1.0.4") (source (origin (method url-fetch) (uri (cran-uri "vdiffr" version)) (sha256 (base32 - "1zjwjw8lqqnx7cxj2aik5rn1g67zsyf0bq08yfwwmsi7v2x6ly3x")))) + "1z8nn8yh6jfzb9r7ylmigwh1p30lrclqm6khmp323qqphzmzfdwy")))) (properties `((upstream-name . "vdiffr"))) (build-system r-build-system) (inputs @@ -30047,14 +30409,14 @@ in output to the equivalent HTML.") (define-public r-pkgdown (package (name "r-pkgdown") - (version "2.0.2") + (version "2.0.3") (source (origin (method url-fetch) (uri (cran-uri "pkgdown" version)) (sha256 (base32 - "11grx7a2rz6b4kwspm7c8crjav677c22hysnp4bkwh5g8kr5nm2h")))) + "0wqga9bcl7wmvkwpkkmf5hx1cl7rjq5ddvqmxhl4p1dczys3adnr")))) (properties `((upstream-name . "pkgdown"))) (build-system r-build-system) (inputs (list pandoc)) @@ -30156,14 +30518,14 @@ visualized at any level of the experiment's design.") (define-public r-qdapregex (package (name "r-qdapregex") - (version "0.7.2") + (version "0.7.5") (source (origin (method url-fetch) (uri (cran-uri "qdapRegex" version)) (sha256 (base32 - "1xa8q1way3gjadrjh3mv3xr4c6b4h16nd2c6lgl969difplpfz9p")))) + "1hdilycwrvi0q6cx7k8vg87bamm2xsafjkya5x4smxysm5k1r4qb")))) (properties `((upstream-name . "qdapRegex"))) (build-system r-build-system) (propagated-inputs (list r-stringi)) @@ -30459,32 +30821,29 @@ Also support writing data frame into ODS file.") (define-public r-qpdf (package (name "r-qpdf") - (version "1.1") + (version "1.2.0") (source (origin (method url-fetch) (uri (cran-uri "qpdf" version)) (sha256 (base32 - "03lnfncw8qd1fwfyqh1mjvnsjr3b63wxbah0wp5g7z7gba90dwbi")) + "1a1d7zad2l94z068mic6dg9wr9bq8mlmqszrj8vxps1441mb6gfh")) (modules '((guix build utils))) (snippet '(begin ;; unvendor libqpdf (delete-file-recursively "src/libqpdf") - (delete-file-recursively "src/include/qpdf") - #t)))) + (delete-file-recursively "src/include/qpdf"))))) (properties `((upstream-name . "qpdf"))) (build-system r-build-system) (arguments '(#:phases (modify-phases %standard-phases (add-after 'unpack 'configure - (lambda _ - (setenv "EXTERNAL_QPDF" "1") - #t))))) + (lambda _ (setenv "EXTERNAL_QPDF" "1")))))) (inputs - (list zlib qpdf)) + (list libjpeg-turbo qpdf zlib)) (propagated-inputs (list r-askpass r-curl r-rcpp)) (native-inputs (list pkg-config)) @@ -30502,14 +30861,14 @@ data you need the @code{pdftools} package.") (define-public r-pdftools (package (name "r-pdftools") - (version "3.1.1") + (version "3.2.1") (source (origin (method url-fetch) (uri (cran-uri "pdftools" version)) (sha256 (base32 - "1lflqf2ypdm4w033vyjykmsy8cl34sp42fzkfgfdhvl2d0xjhl96")))) + "1b9ppdndvlf8nl0i3xy1rx4f9j0j8ic6q9n0c4zn3rv6jdy8zqfi")))) (properties `((upstream-name . "pdftools"))) (build-system r-build-system) (inputs (list zlib poppler)) @@ -30527,14 +30886,14 @@ or into raw bitmap vectors for further processing in R.") (define-public r-antiword (package (name "r-antiword") - (version "1.3") + (version "1.3.1") (source (origin (method url-fetch) (uri (cran-uri "antiword" version)) (sha256 (base32 - "034znb0g9wwb8gi1r3z75v3sbb4mh83qrc4y8mbfx5lbgh8zhj6j")) + "123v8zlczwh6fr1v3x7dl3885xlmddq1bqlcxih8zh07w0hlk1k2")) (modules '((guix build utils))) (snippet '(begin @@ -30970,14 +31329,14 @@ join the effort of providing interesting text visualisations.") (define-public r-gsa (package (name "r-gsa") - (version "1.03.1") + (version "1.03.2") (source (origin (method url-fetch) (uri (cran-uri "GSA" version)) (sha256 (base32 - "05x9wspah1cdznjpncqam1iawsxdiigyl8v2anyhss2k7wwd94p1")))) + "1f1mrxxdbdlnibgav6nsvbpniz2x3km2svc0hf43spb4zicn0z8p")))) (properties `((upstream-name . "GSA"))) (build-system r-build-system) (home-page "https://statweb.stanford.edu/~tibs/GSA/") @@ -30988,6 +31347,25 @@ indicator, a quantitative variable or a survival time.") ;; Any version of the LGPL (license license:lgpl3+))) +(define-public r-gsalib + (package + (name "r-gsalib") + (version "2.1") + (source + (origin + (method url-fetch) + (uri (cran-uri "gsalib" version)) + (sha256 + (base32 + "1k3zjdydzb0dfh1ihih08d4cw6rdamgb97cdqna9mf0qdjc3pcp1")))) + (build-system r-build-system) + (home-page "https://cran.r-project.org/web/packages/gsalib") + (synopsis "Utility functions for GATK") + (description "This package contains utility functions used by the Genome +Analysis Toolkit (GATK) to load tables and plot data. The GATK is a toolkit +for variant discovery in high-throughput sequencing data.") + (license license:expat))) + (define-public r-randomforestsrc (package (name "r-randomforestsrc") @@ -31135,14 +31513,14 @@ in order to customise how it should change with time.") (define-public r-tzdb (package (name "r-tzdb") - (version "0.2.0") + (version "0.3.0") (source (origin (method url-fetch) (uri (cran-uri "tzdb" version)) (sha256 (base32 - "1afmav7s29fb5cd920h6vrzg9cvc4jsidfalxpvhlh1b8mfr0df3")))) + "0f3h4zaf9f4l371k6nc1mq6z2f9aj1vaf2inni8jnsds3zng16b0")))) (properties `((upstream-name . "tzdb"))) (build-system r-build-system) (propagated-inputs (list r-cpp11)) @@ -31203,16 +31581,16 @@ asynchronously from formatting.") (define-public r-rmisc (package (name "r-rmisc") - (version "1.5") + (version "1.5.1") (source (origin (method url-fetch) (uri (cran-uri "Rmisc" version)) (sha256 (base32 - "1ijjhfy3v91fspid77rrkc5dkcb2lav37wc3f4k5lwrn24wzy5y8")))) + "1h6jb0xwkyhm9lwm7nj9bhrb5dhrsifvkpqkrd594j1lz74dar8x")))) (build-system r-build-system) (propagated-inputs - (list r-plyr r-rcpp r-lattice)) + (list r-plyr r-lattice)) (home-page "https://cran.r-project.org/web/packages/Rmisc/") (synopsis "Ryan Miscellaneous") (description "The Rmisc library contains functions for data analysis and @@ -31276,13 +31654,13 @@ reading and writing arbitrary protocol-buffer data in R.") (define-public r-opencpu (package (name "r-opencpu") - (version "2.2.7") + (version "2.2.8") (source (origin (method url-fetch) (uri (cran-uri "opencpu" version)) (sha256 - (base32 "06jpmk95hm39ib5c75xw0mdrdv9x9zz1qil3m8ysb6pp1xx47jz0")))) + (base32 "1h0s7fbifyf4h1296sdk3amij0m6s12wq32mbky7xg4nz8wj29ni")))) (properties `((upstream-name . "opencpu"))) (build-system r-build-system) (inputs @@ -31319,14 +31697,14 @@ Apache2.") (define-public r-exactextractr (package (name "r-exactextractr") - (version "0.7.2") + (version "0.8.2") (source (origin (method url-fetch) (uri (cran-uri "exactextractr" version)) (sha256 (base32 - "0n39dqgsfzybi9yvnpnfdyypl8c9fml80jq0wxssik2n47mvbcif")))) + "0x4axrq9iznvajqy07gcfcrvzniz5yj6wabchgksg0fqz0xancnc")))) (properties `((upstream-name . "exactextractr"))) (build-system r-build-system) (inputs (list geos)) @@ -31345,14 +31723,14 @@ the @code{raster} package that is suitable for extracting raster values using (define-public r-stringfish (package (name "r-stringfish") - (version "0.15.5") + (version "0.15.7") (source (origin (method url-fetch) (uri (cran-uri "stringfish" version)) (sha256 (base32 - "0ac17wl0fcpmipbvhhg5nyccg055671fnlxvnjd5l3kilx313wlx")))) + "0ddpsi7z0kzqgbq9y646pk9afclq0r7ak22zsdh0i93ni0x71c9l")))) (properties `((upstream-name . "stringfish"))) (build-system r-build-system) (propagated-inputs @@ -31499,14 +31877,14 @@ Tensorflow graphs.") (define-public r-tensorflow (package (name "r-tensorflow") - (version "2.8.0") + (version "2.9.0") (source (origin (method url-fetch) (uri (cran-uri "tensorflow" version)) (sha256 (base32 - "19ayjvlxmgjais0kx6fj9an1h1i8mh4c9dhah7dj6390p53pgz93")))) + "12c6ndxx4g6fqjakpzp9pgl29ghswhqyr6q9jahpk0cawizh2znj")))) (properties `((upstream-name . "tensorflow"))) (build-system r-build-system) (inputs (list tensorflow)) @@ -31530,14 +31908,14 @@ between them.") (define-public r-keras (package (name "r-keras") - (version "2.8.0") + (version "2.9.0") (source (origin (method url-fetch) (uri (cran-uri "keras" version)) (sha256 (base32 - "10zvy4lmhb2sbn0gsm12pf95pxj9bmi8241ap1n6170xsld9phcf")))) + "06513d1fp7cxk4v03xm9lhgj6xmp9dqqvw3lnzwbzjwdkfj948yc")))) (properties `((upstream-name . "keras"))) (build-system r-build-system) (propagated-inputs @@ -31716,24 +32094,25 @@ with the dynamic plots from @code{dygraphs}.") (define-public r-rfigshare (package (name "r-rfigshare") - (version "0.3.7") + (version "0.3.8") (source (origin (method url-fetch) (uri (cran-uri "rfigshare" version)) (sha256 (base32 - "1qgzn0mpjy4czy0pnbi395fxxx84arkg8r7rk8aidmd34584gjiq")))) + "10shwl1y9220m7ld5w9fjsjzy5yg8myrz9cz97ps9z2bw7bvka5j")))) (properties `((upstream-name . "rfigshare"))) (build-system r-build-system) (propagated-inputs (list r-ggplot2 r-httpuv r-httr - r-plyr r-rjsonio r-xml r-yaml)) + (native-inputs + (list r-knitr)) (home-page "https://github.com/ropensci/rfigshare") (synopsis "R Interface to figshare") (description @@ -31802,14 +32181,14 @@ fully reproducible.") (define-public r-paws-common (package (name "r-paws-common") - (version "0.3.16") + (version "0.3.17") (source (origin (method url-fetch) (uri (cran-uri "paws.common" version)) (sha256 (base32 - "0mdbnbjprghiwz4i9abh62l5q6mncz3iq76wxvj7ncinf89kd83w")))) + "1dg18hwnrjd6m1vjcxfs2vm1zxciivf4vzhq0z76dmmiqz2yjm28")))) (properties `((upstream-name . "paws.common"))) (build-system r-build-system) (propagated-inputs @@ -32223,14 +32602,14 @@ zoom/navigate any plot when called with any active plot.") (define-public r-zoolog (package (name "r-zoolog") - (version "0.4.1") + (version "1.0.1") (source (origin (method url-fetch) (uri (cran-uri "zoolog" version)) (sha256 (base32 - "1wxxxscw4ji4p4599vdw6vcrkqm0g75x1gh13m4758lb51wav9ks")))) + "00fi7czfwr0ll9070w3ijskd0xvilj02gy8wkgqzzrlilij8ah7p")))) (properties `((upstream-name . "zoolog"))) (build-system r-build-system) (propagated-inputs @@ -32277,14 +32656,14 @@ large datasets.") (define-public r-mlearning (package (name "r-mlearning") - (version "1.0-0") + (version "1.1.1") (source (origin (method url-fetch) (uri (cran-uri "mlearning" version)) (sha256 (base32 - "0r8xfaxw83s2r27b8x5qd0k4r5ayxpkafzn9b1a0jvsr87i6520r")))) + "1zjnh4gcw068li1bks60gazn3205xhmqz67hbkb1san33lmlxya3")))) (properties `((upstream-name . "mlearning"))) (build-system r-build-system) (propagated-inputs @@ -32440,13 +32819,13 @@ convert dates to MMWR day, week, and year and the reverse.") (define-public r-cccd (package (name "r-cccd") - (version "1.5") + (version "1.6") (source (origin (method url-fetch) (uri (cran-uri "cccd" version)) (sha256 - (base32 "0m364zsrgr7mh1yhl2lqxpaf71gzq3y3pp9qgnj4spiy4iadyy7i")))) + (base32 "0cxh19jqappc6zq9nz3m40ybdmsp12mf7yvflsz96wks3ly2ld4y")))) (properties `((upstream-name . "cccd"))) (build-system r-build-system) (propagated-inputs (list r-deldir r-fnn r-igraph r-proxy)) @@ -32962,3 +33341,23 @@ setting individual scales per panel, resizing panels and providing nested facets. It also allows multiple colour, fill scales per plot and hosts a smaller collection of stats, geoms and axis guides.") (license license:expat))) + +(define-public r-zoeppritz + (package + (name "r-zoeppritz") + (version "1.0-8") + (source (origin + (method url-fetch) + (uri (cran-uri "zoeppritz" version)) + (sha256 + (base32 + "1711szx9zz17q6pfinyzlyrw7m9772c8ywlixqar2l165bkjalgm")))) + (properties `((upstream-name . "zoeppritz"))) + (build-system r-build-system) + (home-page "https://cran.r-project.org/package=zoeppritz") + (synopsis "Seismic reflection and scattering coefficients for waves") + (description + "The @code{r-zoeppritz} package calculates and plots scattering matrix +coefficients or scattering amplitudes, for seismological P and S-waves at an +interface.") + (license license:gpl2+))) |