diff options
Diffstat (limited to 'gnu/packages/cran.scm')
| -rw-r--r-- | gnu/packages/cran.scm | 139 |
1 files changed, 99 insertions, 40 deletions
diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index 6ca47c8755..ee4ad98d44 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -977,7 +977,7 @@ supports interactive trees, to enable rich, editable trees in Shiny.") ("r-shiny" ,r-shiny))) (native-inputs `(("uglify-js" ,uglify-js))) - (home-page "http://rstudio.github.io/shinydashboard/") + (home-page "https://rstudio.github.io/shinydashboard/") (synopsis "Create dashboards with shiny") (description "This package provides an extension to the Shiny web application framework for R, making it easy to create attractive dashboards.") @@ -1028,7 +1028,7 @@ well as file saving is available.") (properties `((upstream-name . "shinythemes"))) (build-system r-build-system) (propagated-inputs `(("r-shiny" ,r-shiny))) - (home-page "http://rstudio.github.io/shinythemes/") + (home-page "https://rstudio.github.io/shinythemes/") (synopsis "Themes for Shiny") (description "This package provides themes for use with Shiny. It includes several @@ -2660,14 +2660,14 @@ available in a vignette.") (define-public r-lava (package (name "r-lava") - (version "1.6.6") + (version "1.6.7") (source (origin (method url-fetch) (uri (cran-uri "lava" version)) (sha256 (base32 - "0nfab5fgnmxh8cplg8rd8cp34fny5j0k5wn4baj51r6ck7fq9g3s")))) + "0ffzxbb8pvfh1m6j61az4ga37snyhylq2941fyc76w7w9i2sixv3")))) (build-system r-build-system) (propagated-inputs `(("r-numderiv" ,r-numderiv) @@ -3165,19 +3165,21 @@ for certain use cases.") (define-public r-ggrepel (package (name "r-ggrepel") - (version "0.8.1") + (version "0.8.2") (source (origin (method url-fetch) (uri (cran-uri "ggrepel" version)) (sha256 (base32 - "10vjrcmx8yknfbx93d9a4y3z8gafri0fhimw6hcq733dmdvkml6m")))) + "1qaifn3dazdqbqlii210xhw7yf142iw7g9p2axmmxbz90p0by08d")))) (build-system r-build-system) (propagated-inputs `(("r-ggplot2" ,r-ggplot2) ("r-rcpp" ,r-rcpp) ("r-scales" ,r-scales))) + (native-inputs + `(("r-knitr" ,r-knitr))) ; for vignettes (home-page "http://github.com/slowkow/ggrepel") (synopsis "Repulsive text and label geometries for ggplot2") (description @@ -3634,14 +3636,14 @@ modeling for empirical income distributions.") (define-public r-vcd (package (name "r-vcd") - (version "1.4-5") + (version "1.4-6") (source (origin (method url-fetch) (uri (cran-uri "vcd" version)) (sha256 (base32 - "0pqf1sdp0d60aqc7721hy2zfcp57902by0i28jqbn683dd50c21a")))) + "0rjz49py5l6wnaimw6k8rcyzlvs8cyz5g2xwqj2qis92ly0l103z")))) (build-system r-build-system) (propagated-inputs `(("r-colorspace" ,r-colorspace) @@ -4422,14 +4424,14 @@ Fisher's method), and Sidak correction.") (define-public r-quantmod (package (name "r-quantmod") - (version "0.4-15") + (version "0.4-16") (source (origin (method url-fetch) (uri (cran-uri "quantmod" version)) (sha256 (base32 - "0lyzaf5ypk93v6zj9gdghy05cc7cxgn9yasv1apx5r6qsjcfgwky")))) + "12l5br8abr1yagxqjnjvqzp79sqsv5vx56cxs37gk73r474f4vc2")))) (build-system r-build-system) (propagated-inputs `(("r-curl" ,r-curl) @@ -4812,6 +4814,8 @@ functions to enforce symmetric scales or add tags to facetted plots.") ("r-seriation" ,r-seriation) ("r-viridis" ,r-viridis) ("r-webshot" ,r-webshot))) + (native-inputs + `(("r-knitr" ,r-knitr))) (home-page "https://cran.r-project.org/package=heatmaply") (synopsis "Interactive cluster heat maps using plotly") (description @@ -6375,15 +6379,17 @@ other add-on packages.") (define-public r-insight (package (name "r-insight") - (version "0.8.1") + (version "0.8.2") (source (origin (method url-fetch) (uri (cran-uri "insight" version)) (sha256 (base32 - "1y889bydmji3pcq2bdf6xl6ikmd45wbwl53ssvsk05b5ahkyxi76")))) + "0fjf7dwpv1a7qfbzixppg348z1ksq19kdjm08vcb2am7w0k3plcj")))) (build-system r-build-system) + (native-inputs + `(("r-knitr" ,r-knitr))) (home-page "https://easystats.github.io/insight/") (synopsis "Easy access to model information for various model objects") (description @@ -6504,14 +6510,14 @@ functions.") (define-public r-flextable (package (name "r-flextable") - (version "0.5.8") + (version "0.5.9") (source (origin (method url-fetch) (uri (cran-uri "flextable" version)) (sha256 (base32 - "1x24rz1r5xin122czg85d7nrkwpaabb60p50m3yrd3dh81vfp0hk")))) + "1rkz0nhwjy1l8sb0kmna5v492n2ydnk7gydswnmf88r8vfyjczhw")))) (build-system r-build-system) (propagated-inputs `(("r-base64enc" ,r-base64enc) @@ -7277,6 +7283,8 @@ Processing of very large files is supported.") ("r-mosaicdata" ,r-mosaicdata) ("r-readr" ,r-readr) ("r-tidyr" ,r-tidyr))) + (native-inputs + `(("r-knitr" ,r-knitr))) (home-page "https://github.com/ProjectMOSAIC/mosaic/") (synopsis "Mathematics, statistics, and computation teaching utilities") (description @@ -7590,13 +7598,13 @@ for the reconstruction of gene regulatory networks.") (define-public r-pscl (package (name "r-pscl") - (version "1.5.2") + (version "1.5.5") (source (origin (method url-fetch) (uri (cran-uri "pscl" version)) (sha256 - (base32 "1phf3awsfr4ncqfqzin5m1pz0g7y1zhbcm2sz7358ssw914fd7rc")))) + (base32 "0vzf5wazs92bhqhqd66v3vwmbfmnh67gb2466g1xxawim649nk05")))) (build-system r-build-system) (propagated-inputs `(("r-mass" ,r-mass))) @@ -8663,14 +8671,14 @@ back to file after modifications.") (define-public r-fs (package (name "r-fs") - (version "1.3.1") + (version "1.3.2") (source (origin (method url-fetch) (uri (cran-uri "fs" version)) (sha256 (base32 - "1g26rgx13dzigp2vrlld6h28q33lwbax97zvwdrq2pc3iz54v4yn")))) + "1w30bflx4d7a6f3dn96bf7s7v6aqpvz2yzzxal6qz9jyhb16bxaz")))) (build-system r-build-system) (propagated-inputs `(("r-rcpp" ,r-rcpp))) @@ -9183,20 +9191,18 @@ address a bug.") (define-public r-rcppannoy (package (name "r-rcppannoy") - (version "0.0.15") + (version "0.0.16") (source (origin (method url-fetch) (uri (cran-uri "RcppAnnoy" version)) (sha256 (base32 - "1rlw6npwwcp066midvkhnzf0xmmfkkdf6f581j3j1s2naqss3fvl")))) + "0bfa35lp6vc4b0h3ymvdx50br233q8vvyjml34ngi81rj0imz3fr")))) (properties `((upstream-name . "RcppAnnoy"))) (build-system r-build-system) (propagated-inputs `(("r-rcpp" ,r-rcpp))) - (native-inputs - `(("r-knitr" ,r-knitr))) ; for vignettes (home-page "https://cran.r-project.org/web/packages/RcppAnnoy/") (synopsis "Rcpp bindings for Annoy, a library for Approximate Nearest Neighbors") (description @@ -9528,7 +9534,7 @@ circular variables).") "0ddf9bw5lhj8vb0ja78jf99i0smq4rgmm842k4a4ygap41vdyn2b")))) (build-system r-build-system) (propagated-inputs `(("r-subplex" ,r-subplex))) - (home-page "http://kingaa.github.io/ouch/") + (home-page "https://kingaa.github.io/ouch/") (synopsis "Ornstein-Uhlenbeck models for phylogenetic comparative hypotheses") (description "This package provides tools to fit and compare Ornstein-Uhlenbeck models @@ -10545,14 +10551,14 @@ other manipulations of bitmapped images.") (define-public r-rapidjsonr (package (name "r-rapidjsonr") - (version "1.1") + (version "1.2.0") (source (origin (method url-fetch) (uri (cran-uri "rapidjsonr" version)) (sha256 (base32 - "0h4phjjhykbb45rg5b1xn48vqxdcvcngbm0416ds8in7j469wbwd")))) + "07zdirhbzmvq3cp4xn8ngk1lgxbbabzays315zxbs3sxrz6lzjb2")))) (build-system r-build-system) (home-page "https://cran.r-project.org/web/packages/rapidjsonr") (synopsis "JSON parser") @@ -11578,7 +11584,7 @@ lasso, adaptive lasso and Ridge regression based on cross-validation.") (base32 "1i1nhdapyijvm58zx38q28zk01ndmi6smjivxk5xs2cx9b6v2av9")))) (build-system r-build-system) - (home-page "http://www.stat.umn.edu/geyer/mcmc/") + (home-page "https://www.stat.umn.edu/geyer/mcmc/") (synopsis "Markov chain Monte Carlo") (description "This package simulates continuous distributions of random vectors using @@ -13599,13 +13605,13 @@ SELECT or UPDATE queries to an end-point.") (define-public r-bookdown (package (name "r-bookdown") - (version "0.17") + (version "0.18") (source (origin (method url-fetch) (uri (cran-uri "bookdown" version)) (sha256 (base32 - "10b4gnd6z3w13pysqqan43blxcbk7bgbzc7wr83b23ag1lh2n40j")))) + "1my6g16phx21v5cvfqcnjibh3zcv02xkix347aafd6a7r3hnxpq5")))) (build-system r-build-system) (propagated-inputs `(("r-htmltools" ,r-htmltools) @@ -14313,7 +14319,7 @@ layer by layer.") (build-system r-build-system) (propagated-inputs `(("r-randomforest" ,r-randomforest))) - (home-page "http://ligarto.org/rdiaz/Software/Software.html") + (home-page "https://www.ligarto.org/rdiaz/software/software") (synopsis "Variable selection using random forests") (description "This package provides tools for the variable selection from random @@ -15328,20 +15334,22 @@ easily.") (define-public r-umap (package (name "r-umap") - (version "0.2.4.1") + (version "0.2.5.0") (source (origin (method url-fetch) (uri (cran-uri "umap" version)) (sha256 (base32 - "1pnh3hv8ihiz2nszqp797lkrdhhna2a6mzpizbsk0s9m8cj4wxva")))) + "0qp8zbh6fn8kn6q2h2lyjgmq3pr6gqwsd8ymqx25px13zjhxch9d")))) (build-system r-build-system) (propagated-inputs `(("r-openssl" ,r-openssl) ("r-rcpp" ,r-rcpp) ("r-reticulate" ,r-reticulate) ("r-rspectra" ,r-rspectra))) + (native-inputs + `(("r-knitr" ,r-knitr))) (home-page "https://github.com/tkonopka/umap") (synopsis "Uniform manifold approximation and projection") (description @@ -15682,13 +15690,13 @@ function and interfaces to external frameworks.") (define-public r-covr (package (name "r-covr") - (version "3.4.0") + (version "3.5.0") (source (origin (method url-fetch) (uri (cran-uri "covr" version)) (sha256 - (base32 "0p44kr6yz5sqza5zvq6divqglzkpv0if9pjpjmzhmdaaddjrqzg5")))) + (base32 "1pvr95h7jg9hqq1qq1cccy323pkxldrwafl08151cc410499k4fb")))) (properties `((upstream-name . "covr"))) (build-system r-build-system) (propagated-inputs @@ -15699,6 +15707,8 @@ function and interfaces to external frameworks.") ("r-rex" ,r-rex) ("r-withr" ,r-withr) ("r-yaml" ,r-yaml))) + (native-inputs + `(("r-knitr" ,r-knitr))) ; for vignettes (home-page "https://github.com/r-lib/covr") (synopsis "Test coverage for R packages") (description @@ -15941,19 +15951,21 @@ atmospheric physics.") (define-public r-lifecycle (package (name "r-lifecycle") - (version "0.1.0") + (version "0.2.0") (source (origin (method url-fetch) (uri (cran-uri "lifecycle" version)) (sha256 (base32 - "11rk7hkw63rfrf4aqmb4xrb88kg95xh8hajpjvjfwjym2v02h74n")))) + "0912865c6675fsblrfdk6s568krsj1x8qbk1kipy7m05xs6nwx19")))) (properties `((upstream-name . "lifecycle"))) (build-system r-build-system) (propagated-inputs `(("r-glue" ,r-glue) ("r-rlang" ,r-rlang))) + (native-inputs + `(("r-knitr" ,r-knitr))) ; for vignettes (home-page "https://github.com/r-lib/lifecycle") (synopsis "Manage the life cycle of your package functions") (description @@ -16016,13 +16028,13 @@ programming problems.") (define-public r-desolve (package (name "r-desolve") - (version "1.27.1") + (version "1.28") (source (origin (method url-fetch) (uri (cran-uri "deSolve" version)) (sha256 - (base32 "05sax045qrk550gsn2i7krb9rbg51rx88x4v190acsigqknxffrv")))) + (base32 "0jasvdzig0pzhzspmy20089az19r91xjfb9q6h8gj7c4mr6fymac")))) (properties `((upstream-name . "deSolve"))) (build-system r-build-system) (native-inputs @@ -16880,7 +16892,7 @@ Components. The Lasso solution paths can be computed by the same function.") `(("r-elasticnet" ,r-elasticnet) ("r-mass" ,r-mass) ("r-mda" ,r-mda))) - (home-page "http://www.imm.dtu.dk/~lhc") + (home-page "https://www.imm.dtu.dk/~lkhc/") (synopsis "Sparse discriminant analysis") (description "This package performs sparse linear discriminant analysis for Gaussians @@ -17991,7 +18003,7 @@ actigraphy-measured activity counts data.") (build-system r-build-system) (propagated-inputs `(("r-matrix" ,r-matrix))) - (home-page "http://www.functionaldata.org") + (home-page "https://www.functionaldata.org") (synopsis "Functional data analysis") (description "These functions were developed to support functional data analysis as @@ -19978,7 +19990,7 @@ on a continuous-time birth-death process.") (home-page "http://christophergandrud.github.io/d3Network/") (synopsis "Create D3 JavaScript network, tree, dendrogram, and Sankey graphs") (description - "This packages is intended to make it easy to create D3 JavaScript + "This package is intended to make it easy to create D3 JavaScript network, tree, dendrogram, and Sankey graphs from R using data frames.") (license license:gpl3+))) @@ -20691,3 +20703,50 @@ package is adopted for computing with arbitrarily large numbers. Every function has a hyperlink to its corresponding item in the @dfn{On-Line Encyclopedia of Integer Sequences} (OEIS) in the function help page.") (license license:gpl3+))) + +(define-public r-isoband + (package + (name "r-isoband") + (version "0.2.0") + (source + (origin + (method url-fetch) + (uri (cran-uri "isoband" version)) + (sha256 + (base32 + "1r023s73qypnvpx18znr9ymylr022m90v65mz2jasn0a1kjrfcbq")))) + (properties `((upstream-name . "isoband"))) + (build-system r-build-system) + (propagated-inputs + `(("r-rcpp" ,r-rcpp) + ("r-testthat" ,r-testthat))) + (home-page "https://github.com/wilkelab/isoband") + (synopsis "Generate isolines and isobands from regularly spaced elevation grids") + (description + "This package provides a fast C++ implementation to generate contour +lines (isolines) and contour polygons (isobands) from regularly spaced grids +containing elevation data.") + (license license:expat))) + +(define-public r-ppcor + (package + (name "r-ppcor") + (version "1.1") + (source + (origin + (method url-fetch) + (uri (cran-uri "ppcor" version)) + (sha256 + (base32 + "1x9b2kb8s0bp92b17gby0jwzzr3i4cf3ap9c4nq7m8fav72g0y3a")))) + (properties `((upstream-name . "ppcor"))) + (build-system r-build-system) + (propagated-inputs + `(("r-mass" ,r-mass))) + (home-page "https://cran.r-project.org/web/packages/ppcor/") + (synopsis "Partial and semi-partial correlation") + (description + "This package provides users not only with a function to readily +calculate the higher-order partial and semi-partial correlations but also with +statistics and p-values of the correlation coefficients.") + (license license:gpl2))) |