diff options
Diffstat (limited to 'gnu/packages/cran.scm')
| -rw-r--r-- | gnu/packages/cran.scm | 133 |
1 files changed, 105 insertions, 28 deletions
diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index 742bc5f663..d282ee8ad3 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -119,14 +119,14 @@ are not used.") (define-public r-sys (package (name "r-sys") - (version "3.1") + (version "3.2") (source (origin (method url-fetch) (uri (cran-uri "sys" version)) (sha256 (base32 - "0aj3wcyah3r7c9s3rbs0c8nifd4vqmkzg9fqkrb7f838ww0qw24q")))) + "1k5vk5q9wa5sin0n226i05nymg469s24f6lx64yyhb7yc624j698")))) (build-system r-build-system) (home-page "https://github.com/jeroen/sys") (synopsis "Powerful and reliable tools for running system commands in R") @@ -2867,14 +2867,14 @@ with the package @code{optim}.") (define-public r-ordinal (package (name "r-ordinal") - (version "2019.3-9") + (version "2019.4-25") (source (origin (method url-fetch) (uri (cran-uri "ordinal" version)) (sha256 (base32 - "0xsr2715ghh1q5hjnx7d8lyavzfvpi370blm1xdljn3p4kar8ldi")))) + "1pvrkly4x12w32n7w1qljdwzqnlkv7rfa7rx0nz5vbiw29xas4i8")))) (build-system r-build-system) (propagated-inputs `(("r-mass" ,r-mass) @@ -7193,6 +7193,26 @@ replicating the evaluation as many times as specified, and returning the results conveniently wrapped into a data frame.") (license license:gpl2+))) +(define-public r-mitools + (package + (name "r-mitools") + (version "2.4") + (source + (origin + (method url-fetch) + (uri (cran-uri "mitools" version)) + (sha256 + (base32 + "0c2x2n1p53lcw0vx4vmy5j7m2f95i7g2iwbryl89imr99rvz617j")))) + (build-system r-build-system) + (propagated-inputs `(("r-dbi" ,r-dbi))) + (home-page "https://cran.r-project.org/web/packages/mitools/") + (synopsis "Tools for multiple imputation of missing data") + (description + "This package provides tools to perform analyses and combine results from +multiple-imputation datasets.") + (license license:gpl2))) + (define-public r-magick (package (name "r-magick") @@ -7229,19 +7249,20 @@ console, resulting in an interactive editing environment.") (define-public r-survey (package (name "r-survey") - (version "3.35-1") + (version "3.36") (source (origin (method url-fetch) (uri (cran-uri "survey" version)) (sha256 (base32 - "1nv4sdfmidvyjgvp3zvn5iw35bb8w0v7095is2pdy8cckkgdvr8i")))) + "0xclsy4ram4k48vzh5m5bpmknnpwxnss85v73s4czsjj5ffjxwwh")))) (build-system r-build-system) (propagated-inputs `(("r-lattice" ,r-lattice) ("r-matrix" ,r-matrix) ("r-minqa" ,r-minqa) + ("r-mitools" ,r-mitools) ("r-numderiv" ,r-numderiv) ("r-survival" ,r-survival))) (home-page "http://r-survey.r-forge.r-project.org/survey/") @@ -7584,14 +7605,14 @@ Hothorn, Westfall, 2010, CRC Press).") (define-public r-emmeans (package (name "r-emmeans") - (version "1.3.3") + (version "1.3.4") (source (origin (method url-fetch) (uri (cran-uri "emmeans" version)) (sha256 (base32 - "1hpal1vq6gryzvgfvv9f328idg0mgjvlfnhaj069dhb7zqfwhzlk")))) + "09gxphan34c615y4lhjdqkg5cz4ih9b1r3bb4chs3mwmiav1rxqn")))) (build-system r-build-system) (propagated-inputs `(("r-estimability" ,r-estimability) @@ -7809,6 +7830,58 @@ Laplace approximation. Gradients are calculated using automatic differentiation.") (license license:agpl3+))) +(define-public r-bayestestr + (package + (name "r-bayestestr") + (version "0.1.0") + (source + (origin + (method url-fetch) + (uri (cran-uri "bayestestR" version)) + (sha256 + (base32 + "1m6gj55z3shm3m3mgqj8nk73wij67y617sl04rbj400wz9qrhfva")))) + (properties `((upstream-name . "bayestestR"))) + (build-system r-build-system) + (propagated-inputs + `(("r-insight" ,r-insight))) + (home-page "https://github.com/easystats/bayestestR") + (synopsis "Describe Bayesian models and posterior distributions") + (description + "This package provides utilities to understand and describe posterior +distributions and Bayesian models. It includes point-estimates such as +@dfn{Maximum A Posteriori} (MAP), measures of dispersion such as @dfn{Highest +Density Interval} (HDI), and indices used for null-hypothesis testing (such as +ROPE percentage and pd).") + (license license:gpl3))) + +(define-public r-performance + (package + (name "r-performance") + (version "0.1.0") + (source + (origin + (method url-fetch) + (uri (cran-uri "performance" version)) + (sha256 + (base32 + "19lfx25hkavzbycrh6hq4v24a0dz4s60ryq6jyihjlxgrb9g7cnw")))) + (build-system r-build-system) + (propagated-inputs + `(("r-bayestestr" ,r-bayestestr) + ("r-insight" ,r-insight))) + (home-page "https://easystats.github.io/performance/") + (synopsis "Assessment of regression models performance") + (description + "This package provides utilities for computing measures to assess model +quality, which are not directly provided by R's @code{base} or @code{stats} +packages. These include e.g. measures like r-squared, intraclass correlation +coefficient, root mean squared error or functions to check models for +overdispersion, singularity or zero-inflation and more. Functions apply to a +large variety of regression models, including generalized linear models, mixed +effects models and Bayesian models.") + (license license:gpl3))) + (define-public r-ggeffects (package (name "r-ggeffects") @@ -7846,29 +7919,32 @@ results using @code{ggplot2}.") (define-public r-sjplot (package (name "r-sjplot") - (version "2.6.2") + (version "2.6.3") (source (origin (method url-fetch) (uri (cran-uri "sjPlot" version)) (sha256 (base32 - "0x9pbchmz4qf4c9bi52dhhgv1phfj03q1hnxic8vndl6xwib63cy")))) + "0h1mkmp5mrkbf7y3zh6m4cnm737cpg1m5si0lrmal7j2ixqicwjy")))) (properties `((upstream-name . "sjPlot"))) (build-system r-build-system) (propagated-inputs - `(("r-broom" ,r-broom) + `(("r-bayestestr" ,r-bayestestr) + ("r-broom" ,r-broom) ("r-dplyr" ,r-dplyr) ("r-forcats" ,r-forcats) ("r-ggeffects" ,r-ggeffects) ("r-ggplot2" ,r-ggplot2) ("r-glmmtmb" ,r-glmmtmb) + ("r-insight" ,r-insight) ("r-knitr" ,r-knitr) ("r-lme4" ,r-lme4) ("r-magrittr" ,r-magrittr) ("r-mass" ,r-mass) ("r-modelr" ,r-modelr) ("r-nlme" ,r-nlme) + ("r-performance" ,r-performance) ("r-psych" ,r-psych) ("r-purrr" ,r-purrr) ("r-rlang" ,r-rlang) @@ -9311,14 +9387,14 @@ the first time as the statistic.") (define-public r-splitstackshape (package (name "r-splitstackshape") - (version "1.4.6") + (version "1.4.8") (source (origin (method url-fetch) (uri (cran-uri "splitstackshape" version)) (sha256 (base32 - "03w6h64ga4zqilffdway4l38l5cbman4yrspkzhbigds12aqz25r")))) + "0mpyf2kkfdl69pdc6brl1r6101vyc6pgr7z17s55ppg3y71k4q35")))) (build-system r-build-system) (propagated-inputs `(("r-data-table" ,r-data-table))) @@ -10267,14 +10343,14 @@ Differences with other sparse matrix packages are: (define-public r-fields (package (name "r-fields") - (version "9.6") + (version "9.7") (source (origin (method url-fetch) (uri (cran-uri "fields" version)) (sha256 (base32 - "1v7z48a8jmdcil28rj8c3455k6rssr5v9qi6dyhhpbb193bj8121")))) + "0hsr6r0zyv8zqkfyd9fmjk6v901m2r8pmswvsmps6w5zvpi0p5kw")))) (build-system r-build-system) (propagated-inputs `(("r-maps" ,r-maps) @@ -12109,19 +12185,20 @@ classes.") (define-public r-classint (package (name "r-classint") - (version "0.3-1") + (version "0.3-3") (source (origin (method url-fetch) (uri (cran-uri "classInt" version)) (sha256 (base32 - "1fcjrb593bzvx1z57hq1sjs2gp6g7sm4d4xrhasfrps4nmbzirp2")))) + "0c2z6shlxa928xa20yl956r06lx20mji3mwipdvmj3f4z5g6hgm9")))) (properties `((upstream-name . "classInt"))) (build-system r-build-system) (propagated-inputs `(("r-class" ,r-class) - ("r-e1071" ,r-e1071))) + ("r-e1071" ,r-e1071) + ("r-kernsmooth" ,r-kernsmooth))) (native-inputs `(("gfortran" ,gfortran))) (home-page "https://github.com/r-spatial/classInt/") (synopsis "Choose univariate class intervals") @@ -12207,14 +12284,14 @@ tessellation.") (define-public r-sf (package (name "r-sf") - (version "0.7-3") + (version "0.7-4") (source (origin (method url-fetch) (uri (cran-uri "sf" version)) (sha256 (base32 - "1b9lbid0hmmz8m5vhg8mi2mi2rclia6qwzd1jr8s81i2l0md828d")))) + "0vnyr7xyfcl928kbrb1k8l4fkd0cjrfq486g6gxpvy5j0cc2h4i1")))) (build-system r-build-system) (inputs `(("gdal" ,gdal) @@ -12368,14 +12445,14 @@ genetics of complex population dynamics.") (define-public r-genetics (package (name "r-genetics") - (version "1.3.8.1.1") + (version "1.3.8.1.2") (source (origin (method url-fetch) (uri (cran-uri "genetics" version)) (sha256 (base32 - "0p59r4vxhy68d7cv2s2k4vbgnkxji21naz9jmdry9wxclrg7fw28")))) + "1v0ylnia6c44v356dsmnkx6054vcxazpzsrdh3yph5ch5vg6gjrh")))) (build-system r-build-system) (propagated-inputs `(("r-combinat" ,r-combinat) @@ -12444,14 +12521,14 @@ lspec, polyclass, and polymars.") (define-public r-rms (package (name "r-rms") - (version "5.1-3") + (version "5.1-3.1") (source (origin (method url-fetch) (uri (cran-uri "rms" version)) (sha256 (base32 - "1sw9a0iqiips580jpbk7yiqgyiswihvaqbnq4ybsmd4ki86i5isz")))) + "0drbr3g0x5pbxyzy50wnf92rbal8izizrcqslqhg0gsfg9adjih9")))) (build-system r-build-system) (propagated-inputs `(("r-ggplot2" ,r-ggplot2) @@ -13279,14 +13356,14 @@ sets of URLs.") (define-public r-ggforce (package (name "r-ggforce") - (version "0.2.1") + (version "0.2.2") (source (origin (method url-fetch) (uri (cran-uri "ggforce" version)) (sha256 (base32 - "04rh9z58q288lbi933472lgl26wwbw58rfhpgfyijmw9ccz7i93m")))) + "0snxx9zhcccxa7pz9pf3bjqmcmv9mz4m47v81hklnhm25jj40xg2")))) (build-system r-build-system) (propagated-inputs `(("r-ggplot2" ,r-ggplot2) @@ -13407,14 +13484,14 @@ proteomics applications).") (define-public r-pamr (package (name "r-pamr") - (version "1.56") + (version "1.56.1") (source (origin (method url-fetch) (uri (cran-uri "pamr" version)) (sha256 (base32 - "03h1m5fkw76jjln1psdb7x913a499ghf7n48rcd8damr5vdyf961")))) + "0ycpgkk23y3zzkb42n2skcyl35ps1n7jmyzfj7pbxr3f6gr2grfh")))) (build-system r-build-system) (propagated-inputs `(("r-cluster" ,r-cluster) |