diff options
Diffstat (limited to 'gnu/packages/databases.scm')
| -rw-r--r-- | gnu/packages/databases.scm | 224 |
1 files changed, 35 insertions, 189 deletions
diff --git a/gnu/packages/databases.scm b/gnu/packages/databases.scm index 6ec6d2929f..4f2d7ef11c 100644 --- a/gnu/packages/databases.scm +++ b/gnu/packages/databases.scm @@ -102,6 +102,7 @@ #:use-module (gnu packages gnome) #:use-module (gnu packages gnupg) #:use-module (gnu packages golang) + #:use-module (gnu packages gperf) #:use-module (gnu packages gtk) #:use-module (gnu packages guile) #:use-module (gnu packages icu4c) @@ -178,47 +179,6 @@ #:use-module (srfi srfi-26) #:use-module (ice-9 match)) -(define-public 4store - (package - (name "4store") - (version "1.1.6") - (source (origin - (method git-fetch) - (uri (git-reference - (url "https://github.com/4store/4store") - (commit (string-append "v" version)))) - (file-name (git-file-name name version)) - (sha256 - (base32 "1kzdfmwpzy64cgqlkcz5v4klwx99w0jk7afckyf7yqbqb4rydmpk")) - (patches (search-patches "4store-unset-preprocessor-directive.patch" - "4store-fix-buildsystem.patch")))) - (build-system gnu-build-system) - (native-inputs - (list perl - python-2 - autoconf - automake - gettext-minimal - libtool - `(,pcre "bin") ;for 'pcre-config' - pkg-config)) - (inputs - (list glib - rasqal - libxml2 - raptor2 - readline - avahi - cyrus-sasl - openssl - `(,util-linux "lib"))) - ;; http://www.4store.org has been down for a while now. - (home-page "https://github.com/4store/4store") - (synopsis "Clustered RDF storage and query engine") - (description "4store is a RDF/SPARQL store written in C, supporting -either single machines or networked clusters.") - (license license:gpl3+))) - (define-public ephemeralpg (package (name "ephemeralpg") @@ -1511,9 +1471,6 @@ CSV, DB3, iXF, SQLite, MS-SQL or MySQL to PostgreSQL.") Most public APIs are compatible with @command{mysqlclient} and MySQLdb.") (license license:expat))) -(define-public python2-pymysql - (package-with-python2 python-pymysql)) - (define-public qdbm (package (name "qdbm") @@ -2776,29 +2733,20 @@ semantics.") (define-public libpqxx (package (name "libpqxx") - (version "4.0.1") + (version "7.7.3") (source (origin - (method url-fetch) - (uri (string-append - "http://pqxx.org/download/software/libpqxx/" - name "-" version ".tar.gz")) + (method git-fetch) + (uri (git-reference + (url "https://github.com/jtv/libpqxx") + (commit version))) + (file-name (git-file-name name version)) (sha256 (base32 - "0f6wxspp6rx12fkasanb0z2g2gc8dhcfwnxagx8wwqbpg6ifsz09")))) + "1mrhsih5bhiin0l3c4vp22l9p7c5035m0vvqpx18c0407fkzc7hp")))) (build-system gnu-build-system) - (native-inputs - `(("python" ,python-2))) + (native-inputs (list gcc-11 python-wrapper)) (inputs (list postgresql)) - (arguments - `(#:tests? #f ; # FAIL: 1 - #:phases - (modify-phases %standard-phases - (add-before 'configure 'fix-sed-command - (lambda _ - ;; Newer sed versions error out if double brackets are not used. - (substitute* "configure" - (("\\[:space:\\]") "[[:space:]]")) - #t))))) + (arguments '(#:tests? #f)) ;tests require a running PostgreSQL server (synopsis "C++ connector for PostgreSQL") (description "Libpqxx is a C++ library to enable user programs to communicate with the @@ -2862,9 +2810,6 @@ support for sqlite, mysql and postgresql. If you already have a database, you can autogenerate peewee models using @code{pwiz}, a model generator.") (license license:expat))) -(define-public python2-peewee - (package-with-python2 python-peewee)) - (define-public python-pypika-tortoise (package (name "python-pypika-tortoise") @@ -3080,9 +3025,6 @@ development.") for ODBC.") (license (license:x11-style "file://LICENSE.TXT")))) -(define-public python2-pyodbc-c - (package-with-python2 python-pyodbc-c)) - (define-public python-pyodbc (package (name "python-pyodbc") @@ -3105,9 +3047,6 @@ for ODBC.") for ODBC.") (license (license:x11-style "file:///LICENSE.TXT")))) -(define-public python2-pyodbc - (package-with-python2 python-pyodbc)) - (define-public mdbtools (package (name "mdbtools") @@ -3215,14 +3154,30 @@ Memory-Mapped Database} (LMDB), a high-performance key-value store.") (define-public virtuoso-ose (package (name "virtuoso-ose") - (version "7.2.6") + (version "7.2.7") (source (origin (method url-fetch) (uri (string-append "mirror://sourceforge/virtuoso/virtuoso/" version "/" "virtuoso-opensource-" version ".tar.gz")) (sha256 - (base32 "0ly7s7a3w2a2zhhi9rq9k2qlnzapqbbc1rcdqb3zqqpgg81krz9q")))) + (base32 "1853ln0smiilf3pni70gq6nmi9ps039cy44g6b5i9d2z1n9hnj02")) + (patches (search-patches "virtuoso-ose-remove-pre-built-jar-files.patch")) + (modules '((guix build utils))) + ;; This snippet removes pre-built Java archives. + (snippet + '(for-each delete-file-recursively + (list "binsrc/hibernate" + "binsrc/jena" + "binsrc/jena2" + "binsrc/jena3" + "binsrc/jena4" + "binsrc/rdf4j" + "binsrc/sesame" + "binsrc/sesame2" + "binsrc/sesame3" + "binsrc/sesame4" + "libsrc/JDBCDriverType4"))))) (build-system gnu-build-system) (arguments `(#:tests? #f ; Tests require a network connection. @@ -3233,6 +3188,9 @@ Memory-Mapped Database} (LMDB), a high-performance key-value store.") "--enable-static=no") #:phases (modify-phases %standard-phases + (replace 'bootstrap + (lambda _ + (invoke "sh" "autogen.sh"))) ;; Even with "--enable-static=no", "libvirtuoso-t.a" is left in ;; the build output. The following phase removes it. (add-after 'install 'remove-static-libs @@ -3242,6 +3200,8 @@ Memory-Mapped Database} (LMDB), a high-performance key-value store.") (delete-file (string-append lib "/" file))) '("libvirtuoso-t.a" "libvirtuoso-t.la")))))))) + (native-inputs + (list autoconf automake bison flex gperf libtool)) (inputs (list openssl net-tools readline zlib)) (home-page "http://vos.openlinksw.com/owiki/wiki/VOS/") @@ -3278,33 +3238,6 @@ local Cassandra clusters. It creates, launches and removes Cassandra clusters on localhost.") (license license:asl2.0))) -(define-public python2-ccm - (package-with-python2 python-ccm)) - -(define-public python2-pysqlite - (package - (name "python2-pysqlite") - (version "2.8.3") - (source - (origin - (method url-fetch) - (uri (pypi-uri "pysqlite" version)) - (sha256 - (base32 - "1424gwq9sil2ffmnizk60q36vydkv8rxs6m7xs987kz8cdc37lqp")))) - (build-system python-build-system) - (inputs - (list sqlite)) - (arguments - `(#:python ,python-2 ; incompatible with Python 3 - #:tests? #f)) ; no test target - (home-page "https://github.com/ghaering/pysqlite") - (synopsis "SQLite bindings for Python") - (description - "Pysqlite provides SQLite bindings for Python that comply to the -Database API 2.0T.") - (license license:zlib))) - (define-public python-sqlalchemy (package (name "python-sqlalchemy") @@ -3343,30 +3276,6 @@ designed for efficient and high-performing database access, adapted into a simple and Pythonic domain language.") (license license:x11))) -(define-public python2-sqlalchemy - (let ((base (package-with-python2 python-sqlalchemy))) - (package - (inherit base) - (arguments - (substitute-keyword-arguments (package-arguments base) - ((#:phases phases) - #~(modify-phases #$phases - (replace 'check - (lambda* (#:key tests? #:allow-other-keys) - (when tests? - (invoke "pytest" "-vv" - ;; The memory usage tests are very expensive and run in - ;; sequence; skip them. - "-k" - (string-append - "not test_memusage.py" - ;; This test fails with "AssertionError: Warnings - ;; were not seen [...]". - " and not test_fixture_five"))))))))) - ;; Do not use pytest-xdist, which is broken for Python 2. - (native-inputs (modify-inputs (package-native-inputs base) - (delete "python-pytest-xdist")))))) - (define-public python-sqlalchemy-stubs (package (name "python-sqlalchemy-stubs") @@ -3525,17 +3434,8 @@ value in database is immediately visible to other processes accessing the same database. Concurrency is possible because the values are stored in separate files. Hence the “database” is a directory where all files are governed by PickleShare.") - (properties `((python2-variant . ,(delay python2-pickleshare)))) (license license:expat))) -(define-public python2-pickleshare - (let ((pickleshare (package-with-python2 - (strip-python2-variant python-pickleshare)))) - (package (inherit pickleshare) - (propagated-inputs (modify-inputs (package-propagated-inputs - pickleshare) - (prepend python2-pathlib2)))))) - (define-public python-apsw (package (name "python-apsw") @@ -3579,9 +3479,6 @@ pysqlite it focuses on being a minimal layer over SQLite attempting just to translate the complete SQLite API into Python.") (license license:zlib))) -(define-public python2-apsw - (package-with-python2 python-apsw)) - (define-public python-aiosqlite (package (name "python-aiosqlite") @@ -3638,48 +3535,6 @@ managers for automatically closing connections.") (description "This package implements async database support for Python.") (license license:bsd-3))) -(define-public python2-neo4j-driver - (package - (name "python2-neo4j-driver") - ;; NOTE: When upgrading to 1.5.0, please add a python3 variant. - (version "1.4.0") - (source (origin - (method url-fetch) - (uri (pypi-uri "neo4j-driver" version)) - (sha256 - (base32 - "011r1vh182p8mm83d8dz9rfnc3l7rf7fd00cyrbyfzi71jmc4g98")))) - (build-system python-build-system) - (arguments - `(#:python ,python-2)) - (home-page "https://neo4j.com/developer/python/") - (synopsis "Neo4j driver code written in Python") - (description "This package provides the Neo4j Python driver that connects -to the database using Neo4j's binary protocol. It aims to be minimal, while -being idiomatic to Python.") - (license license:asl2.0))) - -(define-public python2-py2neo - (package - (name "python2-py2neo") - (version "3.1.2") - (source (origin - (method url-fetch) - (uri (pypi-uri "py2neo" version)) - (sha256 - (base32 - "1f1q95vqcvlc3nsc33p841swnjdcjazddlq2dzi3qfnjqjrajxw1")))) - (build-system python-build-system) - (arguments - `(#:python ,python-2)) - (home-page "https://py2neo.org") - (synopsis "Library and toolkit for working with Neo4j in Python") - (description "This package provides a client library and toolkit for -working with Neo4j from within Python applications and from the command -line. The core library has no external dependencies and has been carefully -designed to be easy and intuitive to use.") - (license license:asl2.0))) - (define-public python-psycopg2 (package (name "python-psycopg2") @@ -3916,9 +3771,6 @@ for Python. The design goals are: parsing code in hiredis. It primarily speeds up parsing of multi bulk replies.") (license license:bsd-3))) -(define-public python2-hiredis - (package-with-python2 python-hiredis)) - (define-public python-aioredis (package (name "python-aioredis") @@ -4005,9 +3857,6 @@ reasonable substitute.") "This package provides a Python interface to the Redis key-value store.") (license license:expat))) -(define-public python2-redis - (package-with-python2 python-redis)) - (define-public python-rq (package (name "python-rq") @@ -4105,9 +3954,6 @@ is designed to have a low barrier to entry.") Redis protocol.") (license license:bsd-2))) -(define-public python2-trollius-redis - (package-with-python2 python-trollius-redis)) - (define-public python-sqlparse (package (name "python-sqlparse") @@ -4193,7 +4039,7 @@ the SQL language using a syntax that reflects the resulting query.") (define-public apache-arrow (package (name "apache-arrow") - (version "7.0.0") + (version "8.0.0") (source (origin (method git-fetch) @@ -4203,7 +4049,7 @@ the SQL language using a syntax that reflects the resulting query.") (file-name (git-file-name name version)) (sha256 (base32 - "19xx6mlddca79q6d3wga574m4y32ixmxx2rmk6j3f22i5c37mjzw")))) + "1gwiflk72pq1krc0sjzabypmh7slfyf7ak71fiypy3xgzw8a777c")))) (build-system cmake-build-system) (arguments `(#:tests? #f |