diff options
Diffstat (limited to 'gnu/packages/databases.scm')
| -rw-r--r-- | gnu/packages/databases.scm | 296 |
1 files changed, 13 insertions, 283 deletions
diff --git a/gnu/packages/databases.scm b/gnu/packages/databases.scm index b995de2a53..bff2ee0aba 100644 --- a/gnu/packages/databases.scm +++ b/gnu/packages/databases.scm @@ -10,7 +10,7 @@ ;;; Copyright © 2015 Eric Dvorsak <eric@dvorsak.fr> ;;; Copyright © 2016 Hartmut Goebel <h.goebel@crazy-compilers.com> ;;; Copyright © 2016 Christopher Allan Webber <cwebber@dustycloud.org> -;;; Copyright © 2015, 2016, 2017, 2018 Efraim Flashner <efraim@flashner.co.il> +;;; Copyright © 2015, 2016, 2017, 2018, 2019 Efraim Flashner <efraim@flashner.co.il> ;;; Copyright © 2016, 2017 Nils Gillmann <ng0@n0.is> ;;; Copyright © 2016, 2017, 2018 Roel Janssen <roel@gnu.org> ;;; Copyright © 2016 David Craven <david@craven.ch> @@ -64,6 +64,7 @@ #:use-module (gnu packages crypto) #:use-module (gnu packages curl) #:use-module (gnu packages cyrus-sasl) + #:use-module (gnu packages dbm) #:use-module (gnu packages emacs) #:use-module (gnu packages gettext) #:use-module (gnu packages glib) @@ -85,11 +86,12 @@ #:use-module (gnu packages popt) #:use-module (gnu packages python) #:use-module (gnu packages python-crypto) + #:use-module (gnu packages python-xyz) #:use-module (gnu packages rdf) #:use-module (gnu packages readline) #:use-module (gnu packages ruby) #:use-module (gnu packages serialization) - #:use-module (gnu packages statistics) + #:use-module (gnu packages sqlite) #:use-module (gnu packages tcl) #:use-module (gnu packages terminals) #:use-module (gnu packages textutils) @@ -107,7 +109,6 @@ #:use-module (guix build-system python) #:use-module (guix build-system ruby) #:use-module (guix build-system cmake) - #:use-module (guix build-system r) #:use-module (guix build-system scons) #:use-module ((guix build utils) #:hide (which)) #:use-module (guix utils) @@ -161,28 +162,6 @@ either single machines or networked clusters.") (license license:gpl3+))) -(define-public gdbm - (package - (name "gdbm") - (version "1.18") - (source (origin - (method url-fetch) - (uri (string-append "mirror://gnu/gdbm/gdbm-" - version ".tar.gz")) - (sha256 - (base32 - "1kimnv12bzjjhaqk4c8w2j6chdj9c6bg21lchaf7abcyfss2r0mq")))) - (arguments `(#:configure-flags '("--enable-libgdbm-compat"))) - (build-system gnu-build-system) - (home-page "http://www.gnu.org.ua/software/gdbm") - (synopsis - "Hash library of database functions compatible with traditional dbm") - (description - "GDBM is a library for manipulating hashed databases. It is used to -store key/value pairs in a file in a manner similar to the Unix dbm library -and provides interfaces to the traditional file format.") - (license license:gpl3+))) - (define-public go-gopkg.in-mgo.v2 (package (name "go-gopkg.in-mgo.v2") @@ -229,109 +208,6 @@ standard Go idioms.") (home-page "http://labix.org/mgo") (license license:bsd-2))) -(define-public bdb - (package - (name "bdb") - (version "6.2.32") - (source (origin - (method url-fetch) - (uri (string-append "http://download.oracle.com/berkeley-db/db-" - version ".tar.gz")) - (sha256 - (base32 - "1yx8wzhch5wwh016nh0kfxvknjkafv6ybkqh6nh7lxx50jqf5id9")))) - (build-system gnu-build-system) - (outputs '("out" ; programs, libraries, headers - "doc")) ; 94 MiB of HTML docs - (arguments - '(#:tests? #f ; no check target available - #:disallowed-references ("doc") - #:phases - (modify-phases %standard-phases - (replace 'configure - (lambda* (#:key outputs #:allow-other-keys) - (let ((out (assoc-ref outputs "out")) - (doc (assoc-ref outputs "doc"))) - ;; '--docdir' is not honored, so we need to patch. - (substitute* "dist/Makefile.in" - (("docdir[[:blank:]]*=.*") - (string-append "docdir = " doc "/share/doc/bdb"))) - - (invoke "./dist/configure" - (string-append "--prefix=" out) - (string-append "CONFIG_SHELL=" (which "bash")) - (string-append "SHELL=" (which "bash")) - - ;; Remove 7 MiB of .a files. - "--disable-static" - - ;; The compatibility mode is needed by some packages, - ;; notably iproute2. - "--enable-compat185" - - ;; The following flag is needed so that the inclusion - ;; of db_cxx.h into C++ files works; it leads to - ;; HAVE_CXX_STDHEADERS being defined in db_cxx.h. - "--enable-cxx"))))))) - (synopsis "Berkeley database") - (description - "Berkeley DB is an embeddable database allowing developers the choice of -SQL, Key/Value, XML/XQuery or Java Object storage for their data model.") - ;; Starting with version 6, BDB is distributed under AGPL3. Many individual - ;; files are covered by the 3-clause BSD license. - (license (list license:agpl3+ license:bsd-3)) - (home-page - "http://www.oracle.com/us/products/database/berkeley-db/overview/index.html"))) - -(define-public bdb-5.3 - (package (inherit bdb) - (name "bdb") - (version "5.3.28") - (license (license:non-copyleft "file://LICENSE" - "See LICENSE in the distribution.")) - (source (origin - (method url-fetch) - (uri (string-append "http://download.oracle.com/berkeley-db/db-" - version ".tar.gz")) - (sha256 - (base32 - "0a1n5hbl7027fbz5lm0vp0zzfp1hmxnz14wx3zl9563h83br5ag0")))) - (arguments - `(#:tests? #f ; no check target available - #:disallowed-references ("doc") - #:phases - (modify-phases %standard-phases - (replace 'configure - (lambda* (#:key outputs #:allow-other-keys) - (let ((out (assoc-ref outputs "out")) - (doc (assoc-ref outputs "doc"))) - ;; '--docdir' is not honored, so we need to patch. - (substitute* "dist/Makefile.in" - (("docdir[[:blank:]]*=.*") - (string-append "docdir = " doc "/share/doc/bdb"))) - - (invoke "./dist/configure" - (string-append "--prefix=" out) - (string-append "CONFIG_SHELL=" (which "bash")) - (string-append "SHELL=" (which "bash")) - - ;; Bdb doesn't recognize aarch64 as an architecture. - ,@(if (string=? "aarch64-linux" (%current-system)) - '("--build=aarch64-unknown-linux-gnu") - '()) - - ;; Remove 7 MiB of .a files. - "--disable-static" - - ;; The compatibility mode is needed by some packages, - ;; notably iproute2. - "--enable-compat185" - - ;; The following flag is needed so that the inclusion - ;; of db_cxx.h into C++ files works; it leads to - ;; HAVE_CXX_STDHEADERS being defined in db_cxx.h. - "--enable-cxx"))))))))) - (define-public es-dump-restore (package (name "es-dump-restore") @@ -919,66 +795,31 @@ organized in a hash table or B+ tree.") (define-public recutils (package (name "recutils") - (version "1.7") + (version "1.8") (source (origin (method url-fetch) (uri (string-append "mirror://gnu/recutils/recutils-" version ".tar.gz")) (sha256 (base32 - "0cdwa4094x3yx7vn98xykvnlp9rngvd58d19vs3vh5hrvggccg93")) - (modules '((guix build utils))) - (snippet - '(begin - ;; Adjust the bundled gnulib to work with glibc 2.28. See e.g. - ;; "m4-gnulib-libio.patch". This is a phase rather than patch - ;; or snippet to work around <https://bugs.gnu.org/32347>. - (substitute* (find-files "lib" "\\.c$") - (("#if defined _IO_ftrylockfile") - "#if defined _IO_EOF_SEEN")) - (substitute* "lib/stdio-impl.h" - (("^/\\* BSD stdio derived implementations") - (string-append "#if !defined _IO_IN_BACKUP && defined _IO_EOF_SEEN\n" - "# define _IO_IN_BACKUP 0x100\n" - "#endif\n\n" - "/* BSD stdio derived implementations"))) - #t)))) + "14xiln4immfsw8isnvwvq0h23f6z0wilpgsc4qzabnrzb5lsx3nz")))) (build-system gnu-build-system) - ;; Running tests in parallel leads to test failures and crashes in - ;; torture/utils. - (arguments '(#:parallel-tests? #f - #:configure-flags + (arguments '(#:configure-flags (list (string-append "--with-bash-headers=" (assoc-ref %build-inputs "bash:include") - "/include/bash")) - - #:phases (modify-phases %standard-phases - (add-before 'build 'set-bash4.4-header-location - (lambda _ - (substitute* "bash/Makefile.in" - ;; Adjust the header search path for Bash - ;; 4.4 in accordance with 'bash.pc'. - (("AM_CPPFLAGS = (.*)$" _ rest) - (string-append "AM_CPPFLAGS = " - "-I$(BASH_HEADERS)/include " - rest)) - - ;; Install to PREFIX/lib/bash to match Bash - ;; 4.4's search path. - (("^libdir = .*$") - "libdir = @libdir@/bash\n")) - #t))))) + "/include/bash")))) (native-inputs `(("emacs" ,emacs-minimal) ("bc" ,bc) ("bash:include" ,bash "include") - ("libuuid" ,util-linux))) + ("check" ,check) + ("libuuid" ,util-linux) + ("pkg-config" ,pkg-config))) ;; TODO: Add more optional inputs. (inputs `(("curl" ,curl) - ("libgcrypt" ,libgcrypt) - ("check" ,check))) + ("libgcrypt" ,libgcrypt))) (synopsis "Manipulate plain text files as databases") (description "GNU Recutils is a set of tools and libraries for creating and @@ -1183,87 +1024,6 @@ browse and edit the contents, add and delete entries, all while tracking your changes.") (license license:gpl3+)))) ; no headers, see README.md -(define-public sqlite - (package - (name "sqlite") - (replacement sqlite-3.26.0) - (version "3.24.0") - (source (origin - (method url-fetch) - (uri (let ((numeric-version - (match (string-split version #\.) - ((first-digit other-digits ...) - (string-append first-digit - (string-pad-right - (string-concatenate - (map (cut string-pad <> 2 #\0) - other-digits)) - 6 #\0)))))) - (string-append "https://sqlite.org/2018/sqlite-autoconf-" - numeric-version ".tar.gz"))) - (sha256 - (base32 - "0jmprv2vpggzhy7ma4ynmv1jzn3pfiwzkld0kkg6hvgvqs44xlfr")))) - (build-system gnu-build-system) - (inputs `(("readline" ,readline))) - (arguments - `(#:configure-flags - ;; Add -DSQLITE_SECURE_DELETE, -DSQLITE_ENABLE_UNLOCK_NOTIFY and - ;; -DSQLITE_ENABLE_DBSTAT_VTAB to CFLAGS. GNU Icecat will refuse - ;; to use the system SQLite unless these options are enabled. - (list (string-append "CFLAGS=-O2 -DSQLITE_SECURE_DELETE " - "-DSQLITE_ENABLE_UNLOCK_NOTIFY " - "-DSQLITE_ENABLE_DBSTAT_VTAB")))) - (home-page "https://www.sqlite.org/") - (synopsis "The SQLite database management system") - (description - "SQLite is a software library that implements a self-contained, serverless, -zero-configuration, transactional SQL database engine. SQLite is the most -widely deployed SQL database engine in the world. The source code for SQLite -is in the public domain.") - (license license:public-domain))) - -(define-public sqlite-3.26.0 - (package (inherit sqlite) - (version "3.26.0") - (source (origin - (method url-fetch) - (uri (let ((numeric-version - (match (string-split version #\.) - ((first-digit other-digits ...) - (string-append first-digit - (string-pad-right - (string-concatenate - (map (cut string-pad <> 2 #\0) - other-digits)) - 6 #\0)))))) - (string-append "https://sqlite.org/2018/sqlite-autoconf-" - numeric-version ".tar.gz"))) - (sha256 - (base32 - "0pdzszb4sp73hl36siiv3p300jvfvbcdxi2rrmkwgs6inwznmajx")))))) - -;; This is used by Tracker. -(define-public sqlite-with-fts5 - (package/inherit sqlite - (name "sqlite-with-fts5") - (arguments - (substitute-keyword-arguments (package-arguments sqlite) - ((#:configure-flags flags) - `(cons "--enable-fts5" ,flags)))))) - -;; This is used by Qt. -(define-public sqlite-with-column-metadata - (package/inherit sqlite - (name "sqlite-with-column-metadata") - (arguments - (substitute-keyword-arguments (package-arguments sqlite) - ((#:configure-flags flags) - `(list (string-append "CFLAGS=-O2 -DSQLITE_SECURE_DELETE " - "-DSQLITE_ENABLE_UNLOCK_NOTIFY " - "-DSQLITE_ENABLE_DBSTAT_VTAB " - "-DSQLITE_ENABLE_COLUMN_METADATA"))))))) - (define-public tdb (package (name "tdb") @@ -2273,35 +2033,6 @@ and web services platform functionality.") (supported-systems '("x86_64-linux" "mips64el-linux" "aarch64-linux")) (license license:gpl2))) -(define-public r-rmysql - (package - (name "r-rmysql") - (version "0.10.15") - (source - (origin - (method url-fetch) - (uri (cran-uri "RMySQL" version)) - (sha256 - (base32 - "0bmc7w5fnkjaf333sgc0hskiy332m9gmfaxg0yzkjxscpizdw43n")))) - (properties `((upstream-name . "RMySQL"))) - (build-system r-build-system) - (native-inputs - `(("pkg-config" ,pkg-config))) - (inputs - `(("mariadb" ,mariadb) - ("zlib" ,zlib))) - (propagated-inputs - `(("r-dbi" ,r-dbi))) - (home-page "https://github.com/r-dbi/RMySQL") - (synopsis "Database interface and MySQL driver for R") - (description - "This package provides a DBI interface to MySQL / MariaDB. The RMySQL -package contains an old implementation based on legacy code from S-PLUS which -is being phased out. A modern MySQL client based on Rcpp is available from -the RMariaDB package.") - (license license:gpl2))) - (define-public python-ccm (package (name "python-ccm") @@ -2362,8 +2093,7 @@ Database API 2.0T.") (source (origin (method url-fetch) - (uri (string-append "https://pypi.python.org/packages/source/S/" - "SQLAlchemy/SQLAlchemy-" version ".tar.gz")) + (uri (pypi-uri "SQLAlchemy" version)) (sha256 (base32 "094mmbs4igrxplfyqd59j90jb83ixpbbzqc0w49yw81m82nnjrgg")))) |