diff options
Diffstat (limited to 'gnu/packages/geo.scm')
| -rw-r--r-- | gnu/packages/geo.scm | 113 |
1 files changed, 84 insertions, 29 deletions
diff --git a/gnu/packages/geo.scm b/gnu/packages/geo.scm index 65344bcac2..cce4f2518d 100644 --- a/gnu/packages/geo.scm +++ b/gnu/packages/geo.scm @@ -3,7 +3,7 @@ ;;; Copyright © 2016 Alex Griffin <a@ajgrf.com> ;;; Copyright © 2017, 2018 Björn Höfling <bjoern.hoefling@bjoernhoefling.de> ;;; Copyright © 2018–2021 Tobias Geerinckx-Rice <me@tobias.gr> -;;; Copyright © 2018 Ricardo Wurmus <rekado@elephly.net> +;;; Copyright © 2018, 2023 Ricardo Wurmus <rekado@elephly.net> ;;; Copyright © 2018, 2019 Arun Isaac <arunisaac@systemreboot.net> ;;; Copyright © 2018 Joshua Sierles, Nextjournal <joshua@nextjournal.com> ;;; Copyright © 2018, 2019, 2020, 2021 Julien Lepiller <julien@lepiller.eu> @@ -48,6 +48,7 @@ #:use-module (guix build-system pyproject) #:use-module (guix build-system python) #:use-module (guix build-system qt) + #:use-module (guix build-system r) #:use-module (guix download) #:use-module (guix gexp) #:use-module (guix git-download) @@ -71,6 +72,7 @@ #:use-module (gnu packages cpp) #:use-module (gnu packages cups) #:use-module (gnu packages curl) + #:use-module (gnu packages cran) #:use-module (gnu packages databases) #:use-module (gnu packages datastructures) #:use-module (gnu packages docbook) @@ -81,6 +83,7 @@ #:use-module (gnu packages fontutils) #:use-module (gnu packages gcc) #:use-module (gnu packages gettext) + #:use-module (gnu packages ghostscript) #:use-module (gnu packages gl) #:use-module (gnu packages glib) #:use-module (gnu packages gnome) @@ -92,6 +95,7 @@ #:use-module (gnu packages icu4c) #:use-module (gnu packages image) #:use-module (gnu packages image-processing) + #:use-module (gnu packages imagemagick) #:use-module (gnu packages java) #:use-module (gnu packages kde) #:use-module (gnu packages libusb) @@ -119,16 +123,49 @@ #:use-module (gnu packages sdl) #:use-module (gnu packages speech) #:use-module (gnu packages sqlite) + #:use-module (gnu packages statistics) #:use-module (gnu packages swig) #:use-module (gnu packages textutils) #:use-module (gnu packages time) #:use-module (gnu packages tls) + #:use-module (gnu packages video) #:use-module (gnu packages web) #:use-module (gnu packages webkit) #:use-module (gnu packages wxwidgets) #:use-module (gnu packages xml) #:use-module (gnu packages xorg)) +(define-public gmt + (package + (name "gmt") + (version "6.4.0") + (source + (origin + (method url-fetch) + (uri (string-append "https://github.com/GenericMappingTools/gmt/" + "releases/download/" + version "/gmt-" version "-src.tar.xz")) + (sha256 + (base32 "0wh694cwcw2dz5rsh6pdn9irx08d65iih0vbxz350vzrkkjzyvml")))) + (build-system cmake-build-system) + (arguments (list #:tests? #false)) ;tests need costline data and caches + (inputs + (list curl ffmpeg fftw gdal geos ghostscript netcdf openblas pcre2)) + (native-inputs + (list graphicsmagick pkg-config)) + (home-page "https://www.generic-mapping-tools.org/") + (synopsis "Generic mapping tools") + (description "GMT is a collection of about 100 command-line tools for +manipulating geographic and Cartesian data sets (including filtering, trend +fitting, gridding, projecting, etc.) and producing high-quality illustrations +ranging from simple x-y plots via contour maps to artificially illuminated +surfaces, 3D perspective views and animations. The GMT supplements add +another 50 more specialized and discipline-specific tools. GMT supports over +30 map projections and transformations and requires support data such as GSHHG +coastlines, rivers, and political boundaries and optionally DCW country +polygons.") + (license license:lgpl3+))) + (define-public libaec (package (name "libaec") @@ -840,14 +877,14 @@ projections and coordinate transformations library.") (define-public python-fiona (package (name "python-fiona") - (version "1.8.20") + (version "1.9.4.post1") (source (origin (method url-fetch) (uri (pypi-uri "Fiona" version)) (sha256 (base32 - "0fql7i7dg1xpbadmk8d26dwp91v7faixxc4wq14zg0kvhp9041d7")))) + "083120rqc4rrqzgmams0yjd8b1h4p5xm4n9fnxg064ymw3vx6yan")))) (build-system python-build-system) (arguments `(#:phases @@ -876,16 +913,13 @@ projections and coordinate transformations library.") python-click python-click-plugins python-cligj - python-munch - python-setuptools - python-six - python-pytz)) + python-importlib-metadata + python-six)) (native-inputs (list gdal ; for gdal-config python-boto3 python-cython - python-pytest - python-pytest-cov)) + python-pytest python-pytest-cov python-pytz)) (home-page "https://github.com/Toblerity/Fiona") (synopsis "Fiona reads and writes spatial data files") @@ -903,34 +937,27 @@ pyproj, Rtree, and Shapely.") (define-public python-geopandas (package (name "python-geopandas") - (version "0.10.2") + (version "0.13.2") (source (origin (method url-fetch) (uri (pypi-uri "geopandas" version)) (sha256 (base32 - "1nvim2i47ap1zdwy6kxydskf1cir5g4ij8124wvmrqij0zklggzg")))) - (build-system python-build-system) + "0s59jjk02l1zajz95n1c7fr3fyj44wzxn569q2y7f34042f6vdg5")))) + (build-system pyproject-build-system) (arguments - '(#:phases - (modify-phases %standard-phases - (replace 'check - (lambda* (#:key tests? #:allow-other-keys) - (when tests? - (invoke "pytest" - ; Disable tests that fail due to incompatibilities - ; with our pandas version. - "-k" - (string-append - "not test_getitem_invalid" - " and not test_value_counts" - " and not test_setitem_invalid" - " and not test_insert_invalid") - ; Disable tests that require internet access. - "-m" "not web"))))))) + (list + #:test-flags + '(list + ;; Test files are missing + "--ignore=geopandas/tests/test_overlay.py" + "--ignore=geopandas/io/tests/test_file.py" + ;; Disable tests that require internet access. + "-m" "not web"))) (propagated-inputs - (list python-fiona python-pandas python-pyproj python-shapely)) + (list python-fiona python-packaging python-pandas python-pyproj + python-shapely)) (native-inputs (list python-pytest)) (home-page "https://geopandas.org") @@ -2120,6 +2147,34 @@ using the dataset of topographical information collected by (home-page "https://www.routino.org/") (license license:agpl3+))) +(define-public r-rnaturalearthhires + (let ((commit "c3785a8c44738de6ae8f797080c0a337ebed929d") + (revision "1")) + (package + (name "r-rnaturalearthhires") + (version (git-version "0.2.1" revision commit)) + (source (origin + (method git-fetch) + (uri (git-reference + (url "https://github.com/ropensci/rnaturalearthhires") + (commit commit))) + (file-name (git-file-name name version)) + (sha256 + (base32 + "1fr0yb2fbr9zbk7gqr3rnzz2w4ijjpl6hlzdrh4n27lf0ip3h0cx")))) + (properties `((upstream-name . "rnaturalearthhires"))) + (build-system r-build-system) + (propagated-inputs (list r-sp)) + (native-inputs (list r-knitr)) + (home-page "https://github.com/ropensci/rnaturalearthhires") + (synopsis + "High Resolution World Vector Map Data from Natural Earth used in rnaturalearth") + (description + "Facilitates mapping by making natural earth map data from http:// +www.naturalearthdata.com/ more easily available to R users. Focuses on vector +data.") + (license license:cc0)))) + (define-public qmapshack (package (name "qmapshack") |