diff options
Diffstat (limited to 'gnu/packages/julia-xyz.scm')
| -rw-r--r-- | gnu/packages/julia-xyz.scm | 92 |
1 files changed, 77 insertions, 15 deletions
diff --git a/gnu/packages/julia-xyz.scm b/gnu/packages/julia-xyz.scm index 414aba03f0..b6da796b59 100644 --- a/gnu/packages/julia-xyz.scm +++ b/gnu/packages/julia-xyz.scm @@ -1,9 +1,10 @@ ;;; GNU Guix --- Functional package management for GNU ;;; Copyright © 2020, 2021 Nicolò Balzarotti <nicolo@nixo.xyz> ;;; Copyright © 2021, 2022 Simon Tournier <zimon.toutoune@gmail.com> -;;; Copyright © 2021, 2022 Efraim Flashner <efraim@flashner.co.il> +;;; Copyright © 2021-2023 Efraim Flashner <efraim@flashner.co.il> ;;; Copyright © 2021 Vinicius Monego <monego@posteo.net> ;;; Copyright © 2021 jgart <jgart@dismail.de> +;;; Copyright © 2023 Sharlatan Hellseher <sharlatanus@gmail.com> ;;; ;;; This file is part of GNU Guix. ;;; @@ -746,6 +747,36 @@ variables, both with unordered (nominal variables) and ordered categories (description "This package provides a C-compatible enum for Julia.") (license license:expat))) +(define-public julia-cfitsio + (package + (name "julia-cfitsio") + (version "1.4.1") + (source + (origin + (method git-fetch) + (uri (git-reference + (url "https://github.com/JuliaAstro/CFITSIO.jl") + (commit (string-append "v" version)))) + (file-name (git-file-name name version)) + (sha256 + (base32 "05bxzzjcc021p3hi092h06r2q7qnvql0xz1alggi83i0pp1mxp6d")))) + (build-system julia-build-system) + (native-inputs (list julia-aqua)) + (propagated-inputs (list julia-cfitsio-jll)) + (home-page "https://github.com/JuliaAstro/CFITSIO.jl") + (synopsis "C-style interface to the libcfitsio library") + (description "This package provides Julia implementation of C-style +interface to CFITSIO functions with following features: +@itemize +@item Function names closely mirror the C interface (e.g., +@code{fits_open_file()}). +@item Functions operate on @code{FITSFile}, a thin wrapper for fitsfile C +struct (@code{FITSFile} has concept of \"current HDU\", as in CFITSIO). +@item Wrapper functions do check the return status from CFITSIO and throw an +error with the appropriate message. +@end itemize") + (license license:expat))) + (define-public julia-chainrules (package (name "julia-chainrules") @@ -1202,7 +1233,7 @@ as SLAM (simultaneous localization and mapping).") (define-public julia-crayons (package (name "julia-crayons") - (version "4.0.4") + (version "4.1.1") (source (origin (method git-fetch) @@ -1211,7 +1242,7 @@ as SLAM (simultaneous localization and mapping).") (commit (string-append "v" version)))) (file-name (git-file-name name version)) (sha256 - (base32 "0v3zhjlnb2914bxcj4myl8pgb7m31p77aj2k1bckmqs96jdph10z")))) + (base32 "0vfbb02pclwlbpcl7rhr98a495kga5wydf5wz1gp1xn1wxgpgxpd")))) (build-system julia-build-system) (home-page "https://github.com/KristofferC/Crayons.jl") (synopsis "Colored and styled strings for terminals") @@ -1614,7 +1645,7 @@ valuable enough at this time.") (inputs (list python-wrapper)) (native-inputs - (list git-minimal/fixed ;needed for the "Utilities" test + (list git-minimal/pinned ;needed for the "Utilities" test julia-documentermarkdown julia-documentertools)) (home-page "https://juliadocs.github.io/Documenter.jl") @@ -2097,6 +2128,31 @@ types and sparsity.") using finite difference.") (license license:expat))) +(define-public julia-fitsio + (package + (name "julia-fitsio") + (version "0.17.0") + (source + (origin + (method git-fetch) + (uri (git-reference + (url "https://github.com/JuliaAstro/FITSIO.jl") + (commit (string-append "v" version)))) + (file-name (git-file-name name version)) + (sha256 + (base32 "10w7cdb2cvcwpkcfdz2fwl4ji5rfdv8w9msc9gfd8d34k58bk8c5")))) + (build-system julia-build-system) + (native-inputs + (list julia-aqua julia-orderedcollections)) + (propagated-inputs + (list julia-cfitsio julia-reexport julia-tables)) + (home-page "https://github.com/JuliaAstro/CFITSIO.jl") + (synopsis "Astronomical FITS file support for Julia") + (description "This package provides Julia implementation for reading and +writing @acronym{FITS, Flexible Image Transport System} files, based on the +@code{cfitsio} library.") + (license license:expat))) + (define-public julia-fixedpointnumbers (let ((commit "59ee94b93f2f1ee75544ef44187fc0e440cd8015") (revision "1")) @@ -3439,7 +3495,7 @@ fixes. The Julia IDE effort is pointed to extension for VSCode.") (define-public julia-latexstrings (package (name "julia-latexstrings") - (version "1.2.1") + (version "1.3.0") (source (origin (method git-fetch) @@ -3448,7 +3504,7 @@ fixes. The Julia IDE effort is pointed to extension for VSCode.") (commit (string-append "v" version)))) (file-name (git-file-name name version)) (sha256 - (base32 "117z27krcf8fydgp6mb0pgn75r4gng9qs7v90qb4bqzsry3faadp")))) + (base32 "0iijp96ca9mqg5skr6ps7q0lvqaa374lr2zkbbia5q6qgpq0j5ww")))) (build-system julia-build-system) (native-inputs (list julia-documenter)) @@ -3716,7 +3772,7 @@ TLS} and cryptography C library for Julia.") (define-public julia-measurements (package (name "julia-measurements") - (version "2.6.0") + (version "2.8.0") (source (origin (method git-fetch) @@ -3725,14 +3781,15 @@ TLS} and cryptography C library for Julia.") (commit (string-append "v" version)))) (file-name (git-file-name name version)) (sha256 - (base32 "05p3f0gr4sv4maq8cix5fi8ldq0zagswqsd43xn6fhy046f936mz")))) + (base32 "1rn7qaf2s3l7awm8q5fjxlp1503g9mjgmsnvrbhjjvwyyn1k705r")))) (build-system julia-build-system) (propagated-inputs (list julia-calculus julia-recipesbase julia-requires)) (native-inputs - (list julia-quadgk + (list julia-aqua + julia-quadgk julia-specialfunctions julia-unitful)) (home-page "https://juliaphysics.github.io/Measurements.jl/stable/") @@ -4077,7 +4134,7 @@ doesn't provide any other \"high-level\" functionality like layers or AD.") (define-public julia-optim (package (name "julia-optim") - (version "1.6.0") + (version "1.7.4") (source (origin (method git-fetch) @@ -4086,7 +4143,7 @@ doesn't provide any other \"high-level\" functionality like layers or AD.") (commit (string-append "v" version)))) (file-name (git-file-name name version)) (sha256 - (base32 "0nvl3xp9c6r80y9n7fic4zyq2443apfmbcpnx0wvgkv4vsy08x5j")))) + (base32 "0pdwa2xm08c3g979qgsmcr343j4kkh4l6x5rdj1blhqh5gw8172b")))) (build-system julia-build-system) (arguments (list @@ -4094,9 +4151,14 @@ doesn't provide any other \"high-level\" functionality like layers or AD.") #~(modify-phases %standard-phases (add-after 'unpack 'adjust-tests (lambda _ - ;; TODO: Figure out why this test fails. (substitute* "test/runtests.jl" - ((".*l_bfgs.*") ""))))))) + ;; Distributions.jl isn't packaged yet. + ((".*newton_trust_region.*") "")) + (substitute* + "test/multivariate/solvers/constrained/ipnewton/constraints.jl" + ;; TODO: Figure out why this test fails. + (("@test Optim\\.converged") "@test_skip Optim.converged") + (("@test Optim\\.minimum") "@test_skip Optim.minimum"))))))) (propagated-inputs (list julia-compat julia-fillarrays @@ -4591,7 +4653,7 @@ Julia with little or no overhead (arrays are passed without making a copy).") (define-public julia-quadgk (package (name "julia-quadgk") - (version "2.4.1") + (version "2.5.0") (source (origin (method git-fetch) @@ -4600,7 +4662,7 @@ Julia with little or no overhead (arrays are passed without making a copy).") (commit (string-append "v" version)))) (file-name (git-file-name name version)) (sha256 - (base32 "1hy0629yai6xflgxaflk9764lzr1lzhlghimxk1aqi212q9c6n33")))) + (base32 "0f14dhn0f7ln2j96qvmnsyy9ffzqsngd16ikc136snlxv4k4whiv")))) (build-system julia-build-system) (propagated-inputs (list julia-datastructures)) |