diff options
Diffstat (limited to 'gnu/packages/julia-xyz.scm')
| -rw-r--r-- | gnu/packages/julia-xyz.scm | 302 |
1 files changed, 177 insertions, 125 deletions
diff --git a/gnu/packages/julia-xyz.scm b/gnu/packages/julia-xyz.scm index 4dad977d8d..16f8800c9a 100644 --- a/gnu/packages/julia-xyz.scm +++ b/gnu/packages/julia-xyz.scm @@ -21,6 +21,7 @@ (define-module (gnu packages julia-xyz) #:use-module ((guix licenses) #:prefix license:) + #:use-module (gnu packages) #:use-module (guix packages) #:use-module (guix git-download) #:use-module (guix build-system julia) @@ -120,7 +121,7 @@ provides functions to run a few automatable checks for Julia packages.") (define-public julia-arrayinterface (package (name "julia-arrayinterface") - (version "3.1.17") + (version "3.1.19") (source (origin (method git-fetch) @@ -129,7 +130,7 @@ provides functions to run a few automatable checks for Julia packages.") (commit (string-append "v" version)))) (file-name (git-file-name name version)) (sha256 - (base32 "1yfl7wsciqm8ggfs6grxdrvpkxniy4c63d05f65v2j0c55z8a6mn")))) + (base32 "0cmldnzvdgmfnrnrzgj6v1mfr2rvk5096392rwmhd3iyx7v0pq33")))) (build-system julia-build-system) (propagated-inputs `(("julia-ifelse" ,julia-ifelse) @@ -156,7 +157,7 @@ no issues with the upgrade.") (define-public julia-arraylayouts (package (name "julia-arraylayouts") - (version "0.7.0") + (version "0.7.3") (source (origin (method git-fetch) @@ -165,7 +166,7 @@ no issues with the upgrade.") (commit (string-append "v" version)))) (file-name (git-file-name name version)) (sha256 - (base32 "01725v4jp8h8zwn85splw907r206h1hnp205pchmzjin7h4659xz")))) + (base32 "0ri05xhfrj2909c6yy09qm6zi8v8s5fvmbbwbg8qgjq0yxnviw32")))) (build-system julia-build-system) (propagated-inputs `(("julia-fillarrays" ,julia-fillarrays))) @@ -204,7 +205,7 @@ axis (dimension).") (define-public julia-axisarrays (package (name "julia-axisarrays") - (version "0.4.3") + (version "0.4.4") (source (origin (method git-fetch) @@ -213,7 +214,7 @@ axis (dimension).") (commit (string-append "v" version)))) (file-name (git-file-name name version)) (sha256 - (base32 "079rj7wvh9ks293g2ih1yah5k0sg8wazw08z3vg2bxj4s16wr64p")))) + (base32 "03kzan1lm4fxfhzv1xjg3ysf6y7nagcc61vfz15kvdrp1dqxlynk")))) (build-system julia-build-system) (propagated-inputs `(("julia-rangearrays" ,julia-rangearrays) @@ -235,7 +236,7 @@ axes, allowing column names or interval selections.") (define-public julia-bandedmatrices (package (name "julia-bandedmatrices") - (version "0.16.9") + (version "0.16.10") (source (origin (method git-fetch) @@ -244,7 +245,7 @@ axes, allowing column names or interval selections.") (commit (string-append "v" version)))) (file-name (git-file-name name version)) (sha256 - (base32 "105y5d3208s0byk3p0469sfy79lhjpdblk6karbwj8x7hl26na00")))) + (base32 "0rlfj9gr9ss621v5kw5b06206yaak21s2vq9vk7r8a7p2ylncism")))) (build-system julia-build-system) (propagated-inputs `(("julia-arraylayouts" ,julia-arraylayouts) @@ -260,7 +261,7 @@ the entries on the bands.") (define-public julia-benchmarktools (package (name "julia-benchmarktools") - (version "0.7.0") + (version "1.1.1") (source (origin (method git-fetch) @@ -269,7 +270,7 @@ the entries on the bands.") (commit (string-append "v" version)))) (file-name (git-file-name name version)) (sha256 - (base32 "000izw9pj7cbh9r35nnwg2ijkb9dpfd5nkl2889b8b2dpsh4fi63")))) + (base32 "1xz3kdrphp4b158pg7dwkiry49phs2fjjpdvk1hjpww5ykxacks8")))) (build-system julia-build-system) (propagated-inputs `(("julia-json" ,julia-json))) (home-page "https://github.com/JuliaCI/BenchmarkTools.jl") @@ -282,7 +283,7 @@ benchmarks as well as comparing benchmark results.") (define-public julia-blockarrays (package (name "julia-blockarrays") - (version "0.15.3") + (version "0.16.3") (source (origin (method git-fetch) @@ -291,7 +292,7 @@ benchmarks as well as comparing benchmark results.") (commit (string-append "v" version)))) (file-name (git-file-name name version)) (sha256 - (base32 "15nd493bfkx92ihnr8dj8mb155dj44iqw266igv0qr5q0wad2bfr")))) + (base32 "1f9pnnfv97vww2dxklpx8pa2k85fw2l3pzsj7n28nws1xlwnj96c")))) (build-system julia-build-system) (propagated-inputs `(("julia-arraylayouts" ,julia-arraylayouts) @@ -318,7 +319,7 @@ access to the full matrix to use in in for example a linear solver.") (define-public julia-blockbandedmatrices (package (name "julia-blockbandedmatrices") - (version "0.10.6") + (version "0.10.7") (source (origin (method git-fetch) @@ -327,7 +328,7 @@ access to the full matrix to use in in for example a linear solver.") (commit (string-append "v" version)))) (file-name (git-file-name name version)) (sha256 - (base32 "0q9ni4pgdkb00jb42fdzlhx745852xx2666vr96k0c4l0cn5mi0y")))) + (base32 "10n1r6kmmv2wa307jfg9y2m6p16j8hngjp3fjavpbdy1r5haasm9")))) (build-system julia-build-system) (propagated-inputs `(("julia-arraylayouts" ,julia-arraylayouts) @@ -428,7 +429,7 @@ variables, both with unordered (nominal variables) and ordered categories (define-public julia-chainrules (package (name "julia-chainrules") - (version "0.7.65") + (version "1.1.0") (source (origin (method git-fetch) @@ -437,7 +438,7 @@ variables, both with unordered (nominal variables) and ordered categories (commit (string-append "v" version)))) (file-name (git-file-name name version)) (sha256 - (base32 "0697m5y5ryqnhw6cbk90rlydrxan2b308pzbl86qz4mzhypyk7yi")))) + (base32 "0if93pd3b3scg2x3gmk1cbwjk0ax1n792vy8c38y3xl7jpd5cb70")))) (build-system julia-build-system) (inputs ;required for test `(("julia-chainrulestestutils" ,julia-chainrulestestutils) @@ -459,7 +460,7 @@ execute forward-, reverse-, and mixed-mode primitives.") (define-public julia-chainrulescore (package (name "julia-chainrulescore") - (version "0.9.43") + (version "1.0.2") (source (origin (method git-fetch) @@ -468,7 +469,7 @@ execute forward-, reverse-, and mixed-mode primitives.") (commit (string-append "v" version)))) (file-name (git-file-name name version)) (sha256 - (base32 "12by6zcxv0ivpf0f22gc9i067360syda9m2lxk0rhypxq4smj8w4")))) + (base32 "1866xv30h1bi7f2m993nljzf58wwmv8zlgn6ffn9j3wckch1nfpb")))) (build-system julia-build-system) (inputs ;required for tests `(("julia-benchmarktools" ,julia-benchmarktools) @@ -484,7 +485,7 @@ sensitivities for functions without the need to depend on ChainRules itself.") (define-public julia-chainrulestestutils (package (name "julia-chainrulestestutils") - (version "0.6.11") + (version "1.0.0") (source (origin (method git-fetch) @@ -493,7 +494,7 @@ sensitivities for functions without the need to depend on ChainRules itself.") (commit (string-append "v" version)))) (file-name (git-file-name name version)) (sha256 - (base32 "1nx2fzxhh3q8znnjfjbgf7776scszixmigwna3hvmdfixsk58x0i")))) + (base32 "07l4sjc7avmmp4v1dsym1jyb46q4jsvv7i0yzszf72gj8d9k6lwa")))) (build-system julia-build-system) (propagated-inputs `(("julia-chainrulescore" ,julia-chainrulescore) @@ -542,7 +543,7 @@ color scales for graphics.") (define-public julia-colorschemes (package (name "julia-colorschemes") - (version "3.12.1") + (version "3.13.0") (source (origin (method git-fetch) @@ -551,8 +552,7 @@ color scales for graphics.") (commit (string-append "v" version)))) (file-name (git-file-name name version)) (sha256 - (base32 - "08k39hbdf3jn0001f7qxa99xvagrnh9764911hs6cmxkvp061sa4")))) + (base32 "13gy1njxlkfnxmpj2z6aj1bzbzn7jipaxr9fgkv41yiy0xjhqiyh")))) (build-system julia-build-system) (propagated-inputs `(("julia-colors" ,julia-colors) @@ -663,7 +663,7 @@ common subexpression elimination.") (define-public julia-compat (package (name "julia-compat") - (version "3.30.0") + (version "3.32.0") (source (origin (method git-fetch) @@ -672,7 +672,7 @@ common subexpression elimination.") (commit (string-append "v" version)))) (file-name (git-file-name name version)) (sha256 - (base32 "1qs6fm58dicdjy69qk5p0ndj2b7qsvg7rmydq7igvrvirad55v56")))) + (base32 "1zif3dj0a85w7xqbg0chrdhw8dk410zxcqbnkf764xmylwbps498")))) (build-system julia-build-system) (home-page "https://github.com/JuliaLang/Compat.jl") (synopsis "Compatibility across Julia versions") @@ -685,7 +685,7 @@ way.") (define-public julia-constructionbase (package (name "julia-constructionbase") - (version "1.2.1") + (version "1.3.0") (source (origin (method git-fetch) @@ -694,7 +694,7 @@ way.") (commit (string-append "v" version)))) (file-name (git-file-name name version)) (sha256 - (base32 "1bmx5c5z9jxmyf2xjwwl5lhs9czmwq4isl0bkr78fak4j8brqr4n")))) + (base32 "1jk3h446vkv4yaavgm1hf1az7cwhppvhklvr08s49hhg02cm750q")))) (build-system julia-build-system) (home-page "https://juliaobjects.github.io/ConstructionBase.jl/dev/") (synopsis "Primitive functions for construction of objects") @@ -762,7 +762,7 @@ styles available to terminals.") (define-public julia-dataapi (package (name "julia-dataapi") - (version "1.6.0") + (version "1.7.0") (source (origin (method git-fetch) @@ -771,7 +771,7 @@ styles available to terminals.") (commit (string-append "v" version)))) (file-name (git-file-name name version)) (sha256 - (base32 "14sfvkz169zcbap3gdwpj16qsap783h86fd07flfxk822abam11w")))) + (base32 "0swk31p83fycz5cdj4fg6b0wfqj473lnx94q2fl7ybxkkc6afba7")))) (build-system julia-build-system) (home-page "https://github.com/JuliaData/DataAPI.jl") (synopsis "Data-focused namespace for packages to share functions") @@ -842,7 +842,8 @@ without having to take direct dependencies.") (base32 "15j3hrqq6nazn533bfsvg32xznacbzsl303j1qs48av59ppnvhhv")))) (build-system julia-build-system) (arguments - `(#:phases + `(#:tests? #f ; Tests need upgrading with newer Julia version. + #:phases (modify-phases %standard-phases (add-after 'unpack 'skip-known-failing-tests (lambda _ @@ -886,7 +887,7 @@ dictionaries where values associated with a particular key may change, (define-public julia-dictionaries (package (name "julia-dictionaries") - (version "0.3.8") + (version "0.3.10") (source (origin (method git-fetch) @@ -895,7 +896,7 @@ dictionaries where values associated with a particular key may change, (commit (string-append "v" version)))) (file-name (git-file-name name version)) (sha256 - (base32 "1j88f6qa5hqm64n5q3jy08a02gwp7by401s03n5x7575p58iqqh2")))) + (base32 "1mm43hm8hd6sgmkkpqhbqhvap7mpkjwzmz5algxi6manp580gkr5")))) (build-system julia-build-system) (propagated-inputs `(("julia-indexing" ,julia-indexing))) @@ -924,10 +925,13 @@ dictionaries in Julia, for improved productivity and performance.") (modify-phases %standard-phases (add-after 'unpack 'skip-flakey-tests (lambda _ + ;; Some combination of these tests fail nondeterministically + ;; each of the times this package is built. (substitute* "test/test_dists.jl" (("test dyz ≥") "test_nowarn dyz ≥") (("test dist\\(y, x") "test_nowarn dist(y, x") - (("test dist\\(z, x") "test_nowarn dist(z, x"))))))) + (("test dist\\(z, x") "test_nowarn dist(z, x") + (("test dist\\(z, y") "test_nowarn dist(z, y"))))))) (propagated-inputs `(("julia-statsapi" ,julia-statsapi))) (native-inputs @@ -955,6 +959,8 @@ straightforward loop implementation.") (sha256 (base32 "0fy4kfnfacyfmlly6nqxn77dk2gqw80b69zb4m1i0i39zv3cpqfb")))) (build-system julia-build-system) + (arguments + `(#:tests? #f)) ; Tests try to read SSL certificates. (home-page "https://juliadocs.github.io/DocStringExtensions.jl/latest/") (synopsis "Extensions for Julia's docsystem") (description "This package provides a collection of useful extensions for @@ -1079,6 +1085,14 @@ combinations of dual numbers with predefined Julia numeric types.") (sha256 (base32 "0py46kxl702r8pw3v7x4cqllf7yc91b0dr7vb60xh2qi7d6y3jc7")))) (build-system julia-build-system) + (arguments + `(#:phases + (modify-phases %standard-phases + (add-after 'unpack 'adjust-test-suite + (lambda _ + (substitute* "test/runtests.jl" + ;; Seems to not play nicely with Julia-1.6. + ((".*basic.jl.*") ""))))))) (propagated-inputs `(("julia-arrayinterface" ,julia-arrayinterface))) (home-page "https://github.com/ChrisRackauckas/EllipsisNotation.jl") @@ -1111,7 +1125,7 @@ before (or after)\".") (define-public julia-exprtools (package (name "julia-exprtools") - (version "0.1.3") + (version "0.1.6") (source (origin (method git-fetch) @@ -1120,7 +1134,7 @@ before (or after)\".") (commit (string-append "v" version)))) (file-name (git-file-name name version)) (sha256 - (base32 "1lwxi9fx9farf1jdv42gv43xs3f3i3js2xnvr5gf6d0xfx0g6b6a")))) + (base32 "058ax5d96jpym5w3g37ah1c4xq3fskwpjdhchakzax15vqzy7ab4")))) (build-system julia-build-system) (home-page "https://github.com/invenia/ExprTools.jl") (synopsis "Light-weight expression manipulation tools") @@ -1228,7 +1242,7 @@ working with filesystem paths in Julia.") (define-public julia-fillarrays (package (name "julia-fillarrays") - (version "0.11.7") + (version "0.12.1") (source (origin (method git-fetch) @@ -1237,7 +1251,7 @@ working with filesystem paths in Julia.") (commit (string-append "v" version)))) (file-name (git-file-name name version)) (sha256 - (base32 "1q1qn9pb5dmppddnmf8gggdqyvivqh3ffvbblhn37smcf9r5sy7d")))) + (base32 "1va8vvcxbxcy5xp487hdqfp0ps3m8q0819xrxygsf5135azp3qrh")))) (build-system julia-build-system) (inputs ;required by tests `(("julia-staticarrays" ,julia-staticarrays))) @@ -1252,7 +1266,7 @@ following types: @code{Eye}, @code{Fill}, @code{Ones}, @code{Zeros}, (define-public julia-finitediff (package (name "julia-finitediff") - (version "2.8.0") + (version "2.8.1") (source (origin (method git-fetch) @@ -1261,7 +1275,7 @@ following types: @code{Eye}, @code{Fill}, @code{Ones}, @code{Zeros}, (commit (string-append "v" version)))) (file-name (git-file-name name version)) (sha256 - (base32 "0ndazn02wn8ddwgjh1i32y7pbaqpw06f42ccilz5ya78cyrjhq2m")))) + (base32 "105f6r0hq97n9mxf1nacmz94dpca66vzqj5p3zh4h0brshmggqnq")))) (build-system julia-build-system) (arguments `(#:phases @@ -1291,7 +1305,7 @@ types and sparsity.") (define-public julia-finitedifferences (package (name "julia-finitedifferences") - (version "0.12.6") + (version "0.12.17") (source (origin (method git-fetch) @@ -1300,7 +1314,7 @@ types and sparsity.") (commit (string-append "v" version)))) (file-name (git-file-name name version)) (sha256 - (base32 "0kg8snnspn48i2rr99mwy0an3hzlgrnic7xnh3whj2ws2znw46hr")))) + (base32 "09nsf9cgk49yrvprflnhd9h5rrgs280rgj8sad3csghxdx6jqk5c")))) (build-system julia-build-system) (inputs `(("julia-benchmarktools" ,julia-benchmarktools))) @@ -1443,6 +1457,13 @@ arbitrary functions.") (sha256 (base32 "07sv88c472n6w4x7diy952igbcfm1s104ysnnvprld83312siw06")))) (build-system julia-build-system) + (arguments + `(#:phases + (modify-phases %standard-phases + (add-after 'unpack 'skip-failing-test + (lambda _ + (substitute* "test/runtests.jl" + ((".*RPLE.*") ""))))))) (home-page "https://github.com/JunoLab/FuzzyCompletions.jl") (synopsis "Fuzzy completion provider for Julia") (description @@ -1483,7 +1504,7 @@ algebra routines written in Julia (except for optimized BLAS).") (define-public julia-genericschur (package (name "julia-genericschur") - (version "0.5.0") + (version "0.5.1") (source (origin (method git-fetch) @@ -1492,7 +1513,7 @@ algebra routines written in Julia (except for optimized BLAS).") (commit (string-append "v" version)))) (file-name (git-file-name name version)) (sha256 - (base32 "0kklc2niylvynhq0v49kdmy58m9jmr5jxjf287k1wr9r81fya3sz")))) + (base32 "12x6lxzxm91y3k6s9dam46dq5hrby5sr0gy0fdfnp0xhjzdy2j0d")))) (build-system julia-build-system) (arguments `(#:phases @@ -1566,7 +1587,7 @@ library for parsing HTML.") (define-public julia-http (package (name "julia-http") - (version "0.9.2") + (version "0.9.12") (source (origin (method git-fetch) @@ -1575,7 +1596,7 @@ library for parsing HTML.") (commit (string-append "v" version)))) (file-name (git-file-name name version)) (sha256 - (base32 "0ij0yci13c46p92m4zywvcs02nn8pm0abyfffiyhxvva6hq48lyl")))) + (base32 "1jsyk3mhnwj4h19cxclx26igdqdrw51fd3k1hgav0nm67dy4cxyk")))) (build-system julia-build-system) (arguments `(#:phases @@ -1729,7 +1750,7 @@ dependencies.") (define-public julia-imagecore (package (name "julia-imagecore") - (version "0.9.0") + (version "0.9.1") (source (origin (method git-fetch) @@ -1738,7 +1759,7 @@ dependencies.") (commit (string-append "v" version)))) (file-name (git-file-name name version)) (sha256 - (base32 "0d844lrilw7zjpax8zr5272a9s292wg4qk53mvm0n88yai598zd6")))) + (base32 "0h9m3pl3wic1jrgaqkdifz24cya5vxd3m6qdmm37pxg2y2ii2vcq")))) (build-system julia-build-system) (arguments `(#:tests? #f)) ; Cycle with ImageMagick.jl. @@ -1771,7 +1792,7 @@ of packages designed to support image processing and computer vision.") (define-public julia-imageinterminal (package (name "julia-imageinterminal") - (version "0.4.6") + (version "0.4.7") (source (origin (method git-fetch) @@ -1780,17 +1801,19 @@ of packages designed to support image processing and computer vision.") (commit (string-append "v" version)))) (file-name (git-file-name name version)) (sha256 - (base32 "1mqbv27qmnsr6wqvklzb4gawi7hp4wnaspszhaxny1m53q6wbifl")))) + (base32 "0bbpzi7bv8jdiggq1wmcn67vnf96qagvwg0fk95s125wy5980xsl")))) (build-system julia-build-system) (arguments `(#:tests? #f)) ; Cycle with ReferenceTests.jl. (propagated-inputs `(("julia-crayons" ,julia-crayons) + ("julia-imagebase" ,julia-imagebase) ("julia-imagecore" ,julia-imagecore) - ("julia-imagetransformations" ,julia-imagetransformations))) + ("julia-requires" ,julia-requires))) ;(native-inputs ; `(("julia-coordinatetransformations" ,julia-coordinatetransformations) ; ("julia-imagemagick" ,julia-imagemagick) + ; ("julia-imagetransformations" ,julia-imagetransformations) ; ("julia-offsetarrays" ,julia-offsetarrays) ; ("julia-referencetests" ,julia-referencetests) ; ("julia-rotations" ,julia-rotations) @@ -2024,7 +2047,7 @@ interfaces with @file{.ini} files.") (define-public julia-interpolations (package (name "julia-interpolations") - (version "0.13.2") + (version "0.13.3") (source (origin (method git-fetch) @@ -2033,19 +2056,21 @@ interfaces with @file{.ini} files.") (commit (string-append "v" version)))) (file-name (git-file-name name version)) (sha256 - (base32 "06wh4fc7hy20kq9iipk3w8v50vd09k7vkii43k8z1vw036f6l7x3")))) + (base32 "1236c20k388qlh7k74mhf7hkbn0vf7ss8b1rgh1a6aj0234ayfnc")))) (build-system julia-build-system) (propagated-inputs `(("julia-axisalgorithms" ,julia-axisalgorithms) ("julia-offsetarrays" ,julia-offsetarrays) ("julia-ratios" ,julia-ratios) + ("julia-requires" ,julia-requires) ("julia-staticarrays" ,julia-staticarrays) ("julia-woodburymatrices" ,julia-woodburymatrices))) (native-inputs `(("julia-dualnumbers" ,julia-dualnumbers) ("julia-forwarddiff" ,julia-forwarddiff) ("julia-offsetarrays" ,julia-offsetarrays) - ("julia-unitful" ,julia-unitful))) + ("julia-unitful" ,julia-unitful) + ("julia-zygote" ,julia-zygote))) (home-page "https://github.com/JuliaMath/Interpolations.jl") (synopsis "Continuous interpolation of discrete datasets") (description "This package implements a variety of interpolation schemes for @@ -2126,7 +2151,7 @@ as a string together with the return value.") (define-public julia-irtools (package (name "julia-irtools") - (version "0.4.2") + (version "0.4.3") (source (origin (method git-fetch) @@ -2135,7 +2160,7 @@ as a string together with the return value.") (commit (string-append "v" version)))) (file-name (git-file-name name version)) (sha256 - (base32 "0wwzy77jcdnffnd5fr6xan7162g4wydz67igrq82wflwnrhlcx5y")))) + (base32 "11334fcg2slpwcj0raxf457brhf7pxglgxc6cy8q58ggrpxqfqql")))) (arguments '(#:tests? #f)) ;require Documenter, not packaged yet (build-system julia-build-system) @@ -2217,7 +2242,7 @@ and printing JSON documents.") (define-public julia-json3 (package (name "julia-json3") - (version "1.8.2") + (version "1.9.0") (source (origin (method git-fetch) @@ -2226,7 +2251,7 @@ and printing JSON documents.") (commit (string-append "v" version)))) (file-name (git-file-name name version)) (sha256 - (base32 "1mc3byqm6ygg4mjpdrx6grkr4gn06p25nr7050jgq1k2cf06iqba")))) + (base32 "11z5maz7v50wd99id8z7838higza0cllh2amkdkrlskbri3v2f17")))) (build-system julia-build-system) (propagated-inputs `(("julia-parsers" ,julia-parsers) @@ -2240,7 +2265,7 @@ focus on speed and slick struct mapping.") (define-public julia-lazyarrays (package (name "julia-lazyarrays") - (version "0.21.6") + (version "0.21.11") (source (origin (method git-fetch) @@ -2249,7 +2274,7 @@ focus on speed and slick struct mapping.") (commit (string-append "v" version)))) (file-name (git-file-name name version)) (sha256 - (base32 "0zm1ihvi8v2823ap59ajqcs46s5z0nai8l70n51f6j9dzp8lc3cy")))) + (base32 "1vdli4zr94xhrx5bpvrqiysz21nzlcgmqz0zhza1ayw0zjgzihfw")))) (build-system julia-build-system) (propagated-inputs `(("julia-arraylayouts" ,julia-arraylayouts) @@ -2346,7 +2371,7 @@ comes from the fact that @code{M == map(f, A)}.") (define-public julia-matrixfactorizations (package (name "julia-matrixfactorizations") - (version "0.8.3") + (version "0.8.4") (source (origin (method git-fetch) @@ -2355,7 +2380,7 @@ comes from the fact that @code{M == map(f, A)}.") (commit (string-append "v" version)))) (file-name (git-file-name name version)) (sha256 - (base32 "14c6w1vhyf4pi4454pdp6ryczsxn9pgjg99fg9bkdj03xg5fsxb8")))) + (base32 "15zvcv2l4iqmjpnqjyx2kry7a85p652nbjy9pj3wq0piksqcz4jb")))) (build-system julia-build-system) (arguments `(#:phases @@ -2529,7 +2554,7 @@ Julia, with type-driven, overloadable packing/unpacking functionality.") (define-public julia-mutablearithmetics (package (name "julia-mutablearithmetics") - (version "0.2.19") + (version "0.2.20") (source (origin (method git-fetch) @@ -2538,7 +2563,7 @@ Julia, with type-driven, overloadable packing/unpacking functionality.") (commit (string-append "v" version)))) (file-name (git-file-name name version)) (sha256 - (base32 "1zjfq5sh0rc941pbc9kvnr6a2lpr4yd276mw62vbncbz9jg52rrg")))) + (base32 "1isyj8h4nx96cr6892d154v8pw1nhr7mjyz5bd6ffr2mkzb2bq4f")))) (build-system julia-build-system) (propagated-inputs `(("julia-offsetarrays" ,julia-offsetarrays))) @@ -2604,7 +2629,7 @@ interface to interact with these types.") (define-public julia-nnlib (package (name "julia-nnlib") - (version "0.7.19") + (version "0.7.25") (source (origin (method git-fetch) @@ -2613,10 +2638,11 @@ interface to interact with these types.") (commit (string-append "v" version)))) (file-name (git-file-name name version)) (sha256 - (base32 "163v7hkmbxxgnq7qigmqjdqcdywi2njxbh54w8v0hf4bddnalbba")))) + (base32 "0vp4kcn9ivkhmqgkyvnabcdqi6pv7ghbmjc1llkwv1kzhylyf86p")))) (build-system julia-build-system) (arguments - `(#:phases + `(#:tests? #f ; Test suite not updated for ChainRulesTestUtils-1.0. + #:phases (modify-phases %standard-phases (add-after 'unpack 'drop-cuda-support (lambda _ @@ -2685,7 +2711,7 @@ which they were added to the collection.") (define-public julia-offsetarrays (package (name "julia-offsetarrays") - (version "1.9.2") + (version "1.10.3") (source (origin (method git-fetch) @@ -2694,7 +2720,7 @@ which they were added to the collection.") (commit (string-append "v" version)))) (file-name (git-file-name name version)) (sha256 - (base32 "10mycjmjlp80c1bsdmk1hnb5hg81zqd2dcxyaa9p55ykla051a9q")))) + (base32 "0j5a8ar8yc0j9h87gwfyrcqm23wpyv5yv5gn8vzilpg4vr0fiasc")))) (build-system julia-build-system) (propagated-inputs `(("julia-adapt" ,julia-adapt))) @@ -2829,7 +2855,7 @@ actual computation.") (define-public julia-plotutils (package (name "julia-plotutils") - (version "1.0.10") + (version "1.0.11") (source (origin (method git-fetch) @@ -2838,8 +2864,7 @@ actual computation.") (commit (string-append "v" version)))) (file-name (git-file-name name version)) (sha256 - (base32 - "1jimdkp590g7s33w7i431nn7mp1phjy9gdjs88zyqsmq5hxldacg")))) + (base32 "0pqd3yvs3w48sr50c8rcqk5pzvpdy9nf4kimcvyz9dvwc3jgh6rd")))) (build-system julia-build-system) (propagated-inputs `(("julia-colors" ,julia-colors) @@ -2902,6 +2927,31 @@ Hessian and g the gradient) may not be a descent direction if H is not positive definite.") (license license:expat))) +(define-public julia-preferences + (package + (name "julia-preferences") + (version "1.2.2") + (source + (origin + (method git-fetch) + (uri (git-reference + (url "https://github.com/JuliaPackaging/Preferences.jl") + (commit (string-append "v" version)))) + (file-name (git-file-name name version)) + (sha256 + (base32 "1cail43iqzbi6m9v6981rhz47zf2lcvhs5ds5gdqvc9nx5frghxq")))) + (build-system julia-build-system) + (arguments + `(#:tests? #f)) ; Tests try to mkdir /.julia + (home-page "https://github.com/JuliaPackaging/Preferences.jl") + (synopsis "Store configuration switches to TOML files") + (description "The @code{Preferences} package provides an integrated way for +packages to store configuration switches to persistent TOML files, and use those +pieces of information at both run time and compile time in Julia. This enables +the user to modify the behavior of a package, and have that choice reflected in +everything from run time algorithm choice to code generation at compile time.") + (license license:expat))) + (define-public julia-prettytables (package (name "julia-prettytables") @@ -3087,7 +3137,7 @@ more complex visualizations.") (define-public julia-recipespipeline (package (name "julia-recipespipeline") - (version "0.3.2") + (version "0.3.4") (source (origin (method git-fetch) @@ -3096,8 +3146,7 @@ more complex visualizations.") (commit (string-append "v" version)))) (file-name (git-file-name name version)) (sha256 - (base32 - "0wa342m2d9k4kihr6g9i0wpbsipp0n11kh9jmlw4pc5msmz4rxr0")))) + (base32 "0zq4bzxvq36zr0va6iip3x97mgq5b4fwza8avszx1ryfqm3lg1f7")))) (build-system julia-build-system) (arguments `(#:tests? #f)) ; Cycle with Plots.jl. @@ -3118,7 +3167,7 @@ recipes to full specifications for a plot.") (define-public julia-recursivearraytools (package (name "julia-recursivearraytools") - (version "2.11.4") + (version "2.16.1") (source (origin (method git-fetch) @@ -3127,15 +3176,16 @@ recipes to full specifications for a plot.") (commit (string-append "v" version)))) (file-name (git-file-name name version)) (sha256 - (base32 "14wh39g3l0fzzrkxgxijklilqcgpxsk1d44dfpfl48gsp0n6icjm")))) + (base32 "0vx8ndxrii53na7jsc2lki47wfpi77rn3y2r6xhiysx1qwr14msf")))) (build-system julia-build-system) (arguments `(#:tests? #f)) ; Cycle with OrdinaryDiffEq.jl. (propagated-inputs `(("julia-arrayinterface" ,julia-arrayinterface) + ("julia-chainrulescore" ,julia-chainrulescore) ("julia-docstringextensions" ,julia-docstringextensions) - ("julia-requires" ,julia-requires) ("julia-recipesbase" ,julia-recipesbase) + ("julia-requires" ,julia-requires) ("julia-staticarrays" ,julia-staticarrays) ("julia-zygoterules" ,julia-zygoterules))) ;(native-inputs @@ -3143,7 +3193,6 @@ recipes to full specifications for a plot.") ; ("julia-nlsolve" ,julia-nlsolve) ; ("julia-ordinarydiffeq" ,julia-ordinarydiffeq) ; ("julia-structarrays" ,julia-structarrays) - ; ("julia-unitful" ,julia-unitful) ; ("julia-zygote" ,julia-zygote))) (home-page "https://github.com/SciML/RecursiveArrayTools.jl") (synopsis "Tools for handling objects like arrays of arrays and deeper nestings") @@ -3296,33 +3345,36 @@ other power series in @code{h}.") (license license:expat))) (define-public julia-rotations - (package - (name "julia-rotations") - (version "1.0.2") - (source - (origin - (method git-fetch) - (uri (git-reference - (url "https://github.com/JuliaGeometry/Rotations.jl") - (commit (string-append "v" version)))) - (file-name (git-file-name name version)) - (sha256 - (base32 "1l1a3bnrpv9qdksnk3c8j82ik3yrnpsmnyxyiy3gc1yjya5pajqj")))) - (build-system julia-build-system) - (propagated-inputs - `(("julia-staticarrays" ,julia-staticarrays))) - (native-inputs - `(("julia-benchmarktools" ,julia-benchmarktools) - ("julia-forwarddiff" ,julia-forwarddiff) - ("julia-unitful" ,julia-unitful))) - (home-page "https://github.com/JuliaGeometry/Rotations.jl") - (synopsis "Julia implementations for different rotation parameterisations") - (description "This package implements various 3D rotation parameterizations + ;; This is the first commit with support for julia-1.6. + (let ((commit "b599102535bc3534252c76f3fd4cf521f4741788") + (revision "1")) + (package + (name "julia-rotations") + (version (git-version "1.0.2" revision commit)) + (source + (origin + (method git-fetch) + (uri (git-reference + (url "https://github.com/JuliaGeometry/Rotations.jl") + (commit commit))) + (file-name (git-file-name name version)) + (sha256 + (base32 "01wwqbdmj61yiz7rkmams4xg7gb9hbmg325173846ky4b9x1wb19")))) + (build-system julia-build-system) + (propagated-inputs + `(("julia-staticarrays" ,julia-staticarrays))) + (native-inputs + `(("julia-benchmarktools" ,julia-benchmarktools) + ("julia-forwarddiff" ,julia-forwarddiff) + ("julia-unitful" ,julia-unitful))) + (home-page "https://github.com/JuliaGeometry/Rotations.jl") + (synopsis "Julia implementations for different rotation parameterisations") + (description "This package implements various 3D rotation parameterizations and defines conversions between them. At their heart, each rotation parameterization is a 3×3 unitary (orthogonal) matrix (based on the @code{StaticArrays.jl} package), and acts to rotate a 3-vector about the origin through matrix-vector multiplication.") - (license license:expat))) + (license license:expat)))) (define-public julia-safetestsets ;; The only release tag is the first commit in the repository. @@ -3403,7 +3455,7 @@ in @code{Gadfly}, @code{Plots} and @code{Makie} to label axes and keys.") (define-public julia-simpletraits (package (name "julia-simpletraits") - (version "0.9.3") + (version "0.9.4") (source (origin (method git-fetch) @@ -3412,7 +3464,7 @@ in @code{Gadfly}, @code{Plots} and @code{Makie} to label axes and keys.") (commit (string-append "v" version)))) (file-name (git-file-name name version)) (sha256 - (base32 "1aaq91klwxb0r3ckwihf7rd7jvg70757nkhp5ip4cc3lspnnip23")))) + (base32 "1qvmkqcvhc2nilvkk36szccxdlcv9ls2i0ksxgl2yfjr3b3qlr05")))) (build-system julia-build-system) (propagated-inputs `(("julia-macrotools" ,julia-macrotools))) @@ -3428,18 +3480,16 @@ types are fixed after creation.") (define-public julia-sortingalgorithms (package (name "julia-sortingalgorithms") - (version "1.0.0") + (version "1.0.1") (source (origin (method git-fetch) (uri (git-reference (url "https://github.com/JuliaCollections/SortingAlgorithms.jl") - ;; Tagging releases is hard: - ;; https://github.com/JuliaCollections/SortingAlgorithms.jl/issues/41#issuecomment-840587380 - (commit "aa2b98d384ddd132aae0219e68fb63b92513cb35"))) + (commit (string-append "v" version)))) (file-name (git-file-name name version)) (sha256 - (base32 "13zbx18psxrg4fvkqgp0m7g484vrama2xm6902bbls30801hgljg")))) + (base32 "173x77a80xnh99viqa3r7rgdaksvxaw8xyfqw09gwvp4p2zrxivb")))) (build-system julia-build-system) (arguments `(#:tests? #f)) ; cycle with StatsBase.jl @@ -3457,7 +3507,7 @@ timsort and radixsort.") (define-public julia-specialfunctions (package (name "julia-specialfunctions") - (version "1.3.0") + (version "1.6.0") (source (origin (method git-fetch) @@ -3466,12 +3516,13 @@ timsort and radixsort.") (commit (string-append "v" version)))) (file-name (git-file-name name version)) (sha256 - (base32 "1rfhrrkzi3ils7fklbn35ki1yp5x88fi71qknfwqyw4pk8cf8p80")))) + (base32 "0nfpnglx7zl9g20w2mgfkg17hcw9ri0shaq2rwplj0ij5pwz8yf0")))) (build-system julia-build-system) (inputs `(("julia-chainrulestestutils" ,julia-chainrulestestutils))) (propagated-inputs `(("julia-chainrulescore" ,julia-chainrulescore) + ("julia-logexpfunctions" ,julia-logexpfunctions) ("julia-openspecfun-jll" ,julia-openspecfun-jll))) (home-page "https://github.com/JuliaMath/SpecialFunctions.jl") (synopsis "Special mathematical functions") @@ -3573,7 +3624,7 @@ There are multiple ways to understand @code{StackView}: (define-public julia-static (package (name "julia-static") - (version "0.2.5") + (version "0.3.0") (source (origin (method git-fetch) @@ -3582,7 +3633,7 @@ There are multiple ways to understand @code{StackView}: (commit (string-append "v" version)))) (file-name (git-file-name name version)) (sha256 - (base32 "1sxfp169c7caaklpp7mz8770ayk9w8xw133m95kf7v11sya1lb7v")))) + (base32 "19k7h47zhz3zz28i0l4b3cc0r07pzp8kf35z0yammpy361b644l2")))) (build-system julia-build-system) (propagated-inputs `(("julia-ifelse" ,julia-ifelse))) @@ -3597,7 +3648,7 @@ types and a common interface that is shared between them.") (define-public julia-staticarrays (package (name "julia-staticarrays") - (version "1.2.0") + (version "1.2.9") (source (origin (method git-fetch) @@ -3606,7 +3657,7 @@ types and a common interface that is shared between them.") (commit (string-append "v" version)))) (file-name (git-file-name name version)) (sha256 - (base32 "0z4g1kk6gy514dyafb559gcp4264ffx6h28ffczdvkyk8gm9j0m7")))) + (base32 "1902bl9p96mfq7d1rbilwp98wz2g82ml9svcgx7sczglyjbs4nsk")))) (build-system julia-build-system) (inputs `(("julia-benchmarktools" ,julia-benchmarktools))) @@ -3762,7 +3813,7 @@ the @code{Pluto.jl} tabular data import functionality.") (define-public julia-tables (package (name "julia-tables") - (version "1.4.3") + (version "1.4.4") (source (origin (method git-fetch) @@ -3771,7 +3822,7 @@ the @code{Pluto.jl} tabular data import functionality.") (commit (string-append "v" version)))) (file-name (git-file-name name version)) (sha256 - (base32 "0yfjl4v1vglsk9wr7gbqgya4kk3a0q0i6zhi9xdgvnqsqzqrsc7c")))) + (base32 "1sqqagzqvav8b1rv5ywwbgy9ixvlmipq95fkwfwn0m8769i8jwzb")))) (build-system julia-build-system) (propagated-inputs `(("julia-dataapi" ,julia-dataapi) @@ -3907,7 +3958,8 @@ package.") (commit (string-append "v" version)))) (file-name (git-file-name name version)) (sha256 - (base32 "1s4mdywbp7nli7z985fqaj1rs4i6d92b1jx3lhg0qhk1s5wc0v8j")))) + (base32 "1s4mdywbp7nli7z985fqaj1rs4i6d92b1jx3lhg0qhk1s5wc0v8j")) + (patches (search-patches "julia-tracker-16-compat.patch")))) (build-system julia-build-system) (propagated-inputs `(("julia-adapt" ,julia-adapt) @@ -3929,7 +3981,7 @@ automatic differentiation for its machine learning platform.") (define-public julia-typedtables (package (name "julia-typedtables") - (version "1.2.4") + (version "1.4.0") (source (origin (method git-fetch) @@ -3938,7 +3990,7 @@ automatic differentiation for its machine learning platform.") (commit (string-append "v" version)))) (file-name (git-file-name name version)) (sha256 - (base32 "06k5h7ybsh29b6kiy0p62rp9b2q3xi9jk8p9wf0kq907p5kvfnfy")))) + (base32 "0nk6zhqvl2r8yhjdhb59kxq0srd3vy4ysg4d8rszj9a43dnn3w3i")))) (build-system julia-build-system) (propagated-inputs `(("julia-adapt" ,julia-adapt) @@ -4009,7 +4061,7 @@ working with @acronym{URIs,Uniform Resource Identifiers}, as defined in RFC (define-public julia-unitful (package (name "julia-unitful") - (version "1.8.0") + (version "1.9.0") (source (origin (method git-fetch) @@ -4018,7 +4070,7 @@ working with @acronym{URIs,Uniform Resource Identifiers}, as defined in RFC (commit (string-append "v" version)))) (file-name (git-file-name name version)) (sha256 - (base32 "0n9z4skj04h033qbn22cn6f5jby6584j6pizvs7bdbk93h39ch1g")))) + (base32 "10qwscd15dnmvx116dwvg99m7kmwgmj5ahdkq7psiq48lcc554gq")))) (build-system julia-build-system) (propagated-inputs `(("julia-constructionbase" ,julia-constructionbase))) @@ -4056,7 +4108,7 @@ useful in order to support @code{VersionNumber} comparisons applied to (define-public julia-weakrefstrings (package (name "julia-weakrefstrings") - (version "1.0.0") + (version "1.1.0") (source (origin (method git-fetch) @@ -4065,7 +4117,7 @@ useful in order to support @code{VersionNumber} comparisons applied to (commit (string-append "v" version)))) (file-name (git-file-name name version)) (sha256 - (base32 "1p8q62zsmi02vyckgy25ddmxns223xrhx575x9lfgvr7jrw1kl2p")))) + (base32 "14h1vdnc3rx87w6v2rr59lgb4kai2hd1wzqpxhmzsi8karg2z219")))) (build-system julia-build-system) (propagated-inputs `(("julia-dataapi" ,julia-dataapi) @@ -4147,7 +4199,7 @@ Zygote, without depending on Zygote itself.") (define-public julia-zygote (package (name "julia-zygote") - (version "0.6.10") + (version "0.6.17") (source (origin (method git-fetch) @@ -4156,7 +4208,7 @@ Zygote, without depending on Zygote itself.") (commit (string-append "v" version)))) (file-name (git-file-name name version)) (sha256 - (base32 "0qqjzhiqghj07mab24b0n0h4xfzq8r1s9hccrmx1lwjkkskhc5f9")))) + (base32 "1cx66sp30s34ln6p0fpqk1ggjxfxg2gp8791zz3cl85dmk4dl14b")))) (build-system julia-build-system) (arguments `(#:tests? #f)) ;require CUDA, not packaged yet |