diff options
Diffstat (limited to 'gnu/packages/maths.scm')
| -rw-r--r-- | gnu/packages/maths.scm | 86 |
1 files changed, 75 insertions, 11 deletions
diff --git a/gnu/packages/maths.scm b/gnu/packages/maths.scm index b00d1aa8f1..aa9c7478b7 100644 --- a/gnu/packages/maths.scm +++ b/gnu/packages/maths.scm @@ -239,6 +239,50 @@ triangulations.") (license (license:non-copyleft "file://COPYING.txt" "See COPYING in the distribution.")))) +(define-public python-cvxopt + (package + (name "python-cvxopt") + (version "1.2.1") + (source (origin + (method git-fetch) + (uri (git-reference + (url "https://github.com/cvxopt/cvxopt.git") + (commit version))) + (file-name (git-file-name name version)) + (sha256 + (base32 + "05mnjil9palaa48xafdfh4f5pr4z7aqjr995rwl08qfyxs8y0crf")))) + (build-system python-build-system) + (arguments + `(#:phases + (modify-phases %standard-phases + (add-after 'unpack 'find-libraries + (lambda* (#:key inputs #:allow-other-keys) + (setenv "CVXOPT_BLAS_LIB" "openblas") + (setenv "CVXOPT_BUILD_FFTW" "1") + (setenv "CVXOPT_BUILD_GLPK" "1") + (setenv "CVXOPT_BUILD_GSL" "1") + #t))))) + (inputs + `(("fftw" ,fftw) + ("glpk" ,glpk) + ("gsl" ,gsl) + ("lapack" ,lapack) + ("openblas" ,openblas) + ("suitesparse" ,suitesparse))) + (home-page "https://www.cvxopt.org") + (synopsis "Python library for convex optimization") + (description + "CVXOPT is a package for convex optimization based on the Python +programming language. Its main purpose is to make the development of software +for convex optimization applications straightforward by building on Python’s +extensive standard library and on the strengths of Python as a high-level +programming language.") + (license license:gpl3+))) + +(define-public python2-cvxopt + (package-with-python2 python-cvxopt)) + (define-public units (package (name "units") @@ -814,8 +858,11 @@ incompatible with HDF5.") (mkdir-p flib) (mkdir-p finc) (mkdir-p fex) - (rename-file (string-append bin "/h5fc") - (string-append fbin "/h5fc")) + ;; Note: When built with --enable-parallel, the 'h5fc' file + ;; doesn't exist, hence this condition. + (when (file-exists? (string-append bin "/h5fc")) + (rename-file (string-append bin "/h5fc") + (string-append fbin "/h5fc"))) (for-each (lambda (file) (rename-file file (string-append flib "/" (basename file)))) @@ -1034,10 +1081,13 @@ Swath).") `(("mpi" ,openmpi) ,@(package-inputs hdf5))) (arguments - (substitute-keyword-arguments `(#:configure-flags '("--enable-parallel") - ,@(package-arguments hdf5)) + (substitute-keyword-arguments (package-arguments hdf5) + ((#:configure-flags flags) + ``("--enable-parallel" ,@(delete "--enable-cxx" ,flags))) ((#:phases phases) `(modify-phases ,phases + (add-after 'build 'mpi-setup + ,%openmpi-setup) (add-before 'check 'patch-tests (lambda _ ;; OpenMPI's mpirun will exit with non-zero status if it @@ -1396,6 +1446,13 @@ can solve two kinds of problems: ("less" ,less) ("ghostscript" ,ghostscript) ("gnuplot" ,gnuplot))) + ;; Octave code uses this variable to detect directories holding multiple CA + ;; certificates to verify peers with. This is required for the networking + ;; functions that require encryption to work properly. + (native-search-paths + (list (search-path-specification + (variable "CURLOPT_CAPATH") + (files '("etc/ssl/certs"))))) (arguments `(#:configure-flags (list (string-append "--with-shell=" @@ -1689,13 +1746,21 @@ scientific applications modeled by partial differential equations.") (package (inherit petsc) (name "petsc-openmpi") (inputs - `(("openmpi" ,openmpi) - ("hdf5" ,hdf5-parallel-openmpi) + `(("hdf5" ,hdf5-parallel-openmpi) + ("metis" ,metis) + ("mumps" ,mumps-openmpi) + ("openmpi" ,openmpi) + ("scalapack" ,scalapack) + ("scotch" ,pt-scotch) ,@(package-inputs petsc))) (arguments (substitute-keyword-arguments (package-arguments petsc) ((#:configure-flags cf) ``("--with-mpiexec=mpirun" + "--with-metis=1" + "--with-mumps=1" + "--with-scalapack=1" + "--with-ptscotch=1" ,(string-append "--with-mpi-dir=" (assoc-ref %build-inputs "openmpi")) ,(string-append "--with-hdf5-include=" @@ -1705,9 +1770,9 @@ scientific applications modeled by partial differential equations.") ,@(delete "--with-mpi=0" ,cf))) ((#:phases phases) `(modify-phases ,phases - (add-before 'check 'mpi-setup + (add-before 'configure 'mpi-setup ,%openmpi-setup))))) - (synopsis "Library to solve PDEs (with MPI support)"))) + (synopsis "Library to solve PDEs (with MUMPS and MPI support)"))) (define-public petsc-complex-openmpi (package (inherit petsc-complex) @@ -1724,7 +1789,6 @@ scientific applications modeled by partial differential equations.") ,@(delete "--with-mpi=0" ,cf))))) (synopsis "Library to solve PDEs (with complex scalars and MPI support)"))) - (define-public python-kiwisolver (package (name "python-kiwisolver") @@ -2595,7 +2659,7 @@ to BMP, JPEG or PNG image formats.") (define-public maxima (package (name "maxima") - (version "5.41.0") + (version "5.42.0") (source (origin (method url-fetch) @@ -2603,7 +2667,7 @@ to BMP, JPEG or PNG image formats.") version "-source/" name "-" version ".tar.gz")) (sha256 (base32 - "0x0n81z0s4pl8nwpf7ivlsbvsdphm9w42250g7qdkizl0132by6s")) + "0d5pdihvcbwb7r4i4qs5qqgsz46hxlq33qj8is053llrgn9ylpyn")) (patches (search-patches "maxima-defsystem-mkdir.patch")))) (build-system gnu-build-system) (inputs |