diff options
Diffstat (limited to 'gnu/packages/patches/hdf5-1.8-mpi-deprecations.patch')
| -rw-r--r-- | gnu/packages/patches/hdf5-1.8-mpi-deprecations.patch | 169 |
1 files changed, 0 insertions, 169 deletions
diff --git a/gnu/packages/patches/hdf5-1.8-mpi-deprecations.patch b/gnu/packages/patches/hdf5-1.8-mpi-deprecations.patch deleted file mode 100644 index 29242dc4e8..0000000000 --- a/gnu/packages/patches/hdf5-1.8-mpi-deprecations.patch +++ /dev/null @@ -1,169 +0,0 @@ ---- a/src/H5.c -+++ b/src/H5.c -@@ -138,7 +138,7 @@ - if (mpi_initialized && !mpi_finalized) { - int key_val; - -- if(MPI_SUCCESS != (mpi_code = MPI_Comm_create_keyval(MPI_NULL_COPY_FN, -+ if(MPI_SUCCESS != (mpi_code = MPI_Comm_create_keyval(MPI_COMM_NULL_COPY_FN, - (MPI_Comm_delete_attr_function *)H5_mpi_delete_cb, - &key_val, NULL))) - HMPI_GOTO_ERROR(FAIL, "MPI_Comm_create_keyval failed", mpi_code) ---- hdf5-1.8.19/testpar/t_cache.c -+++ hdf5-1.8.19/testpar/t_cache.c -@@ -1187,20 +1187,20 @@ - struct mssg_t sample; /* used to compute displacements */ - - /* setup the displacements array */ -- if ( ( MPI_SUCCESS != MPI_Address(&sample.req, &displs[0]) ) || -- ( MPI_SUCCESS != MPI_Address(&sample.src, &displs[1]) ) || -- ( MPI_SUCCESS != MPI_Address(&sample.dest, &displs[2]) ) || -- ( MPI_SUCCESS != MPI_Address(&sample.mssg_num, &displs[3]) ) || -- ( MPI_SUCCESS != MPI_Address(&sample.base_addr, &displs[4]) ) || -- ( MPI_SUCCESS != MPI_Address(&sample.len, &displs[5]) ) || -- ( MPI_SUCCESS != MPI_Address(&sample.ver, &displs[6]) ) || -- ( MPI_SUCCESS != MPI_Address(&sample.count, &displs[7]) ) || -- ( MPI_SUCCESS != MPI_Address(&sample.magic, &displs[8]) ) ) { -+ if ( ( MPI_SUCCESS != MPI_Get_address(&sample.req, &displs[0]) ) || -+ ( MPI_SUCCESS != MPI_Get_address(&sample.src, &displs[1]) ) || -+ ( MPI_SUCCESS != MPI_Get_address(&sample.dest, &displs[2]) ) || -+ ( MPI_SUCCESS != MPI_Get_address(&sample.mssg_num, &displs[3]) ) || -+ ( MPI_SUCCESS != MPI_Get_address(&sample.base_addr, &displs[4]) ) || -+ ( MPI_SUCCESS != MPI_Get_address(&sample.len, &displs[5]) ) || -+ ( MPI_SUCCESS != MPI_Get_address(&sample.ver, &displs[6]) ) || -+ ( MPI_SUCCESS != MPI_Get_address(&sample.count, &displs[7]) ) || -+ ( MPI_SUCCESS != MPI_Get_address(&sample.magic, &displs[8]) ) ) { - - nerrors++; - success = FALSE; - if ( verbose ) { -- HDfprintf(stdout, "%d:%s: MPI_Address() call failed.\n", -+ HDfprintf(stdout, "%d:%s: MPI_Get_address() call failed.\n", - world_mpi_rank, fcn_name); - } - -@@ -1215,14 +1215,14 @@ - - if ( success ) { - -- result = MPI_Type_struct(9, block_len, displs, mpi_types, &mpi_mssg_t); -+ result = MPI_Type_create_struct(9, block_len, displs, mpi_types, &mpi_mssg_t); - - if ( result != MPI_SUCCESS ) { - - nerrors++; - success = FALSE; - if ( verbose ) { -- HDfprintf(stdout, "%d:%s: MPI_Type_struct() call failed.\n", -+ HDfprintf(stdout, "%d:%s: MPI_Type_create_struct() call failed.\n", - world_mpi_rank, fcn_name); - } - } ---- hdf5-1.8.19/testpar/t_mpi.c -+++ hdf5-1.8.19/testpar/t_mpi.c -@@ -279,7 +279,7 @@ - printf("Skipped GB file range test " - "because MPI_Offset cannot support it\n"); - }else{ -- buf = HDmalloc(MB); -+ buf = (char *)HDmalloc(MB); - VRFY((buf!=NULL), "malloc succeed"); - - /* open a new file. Remove it first in case it exists. */ -@@ -624,7 +624,7 @@ - and this platform. - - 1. Details for the test: --1) Create two derived datatypes with MPI_Type_hindexed: -+1) Create two derived datatypes with MPI_Type_create_hindexed: - datatype1: - count = 1, blocklens = 1, offsets = 0, - base type = MPI_BYTE(essentially a char) -@@ -633,7 +633,7 @@ - base type = MPI_BYTE - - 2) Using these two derived datatypes, -- Build another derived datatype with MPI_Type_struct: -+ Build another derived datatype with MPI_Type_create_struct: - advtype: derived from datatype1 and datatype2 - advtype: - count = 2, blocklens[0] = 1, blocklens[1]=1, -@@ -676,10 +676,9 @@ - int mpi_err_strlen; - int mpi_err; - int i; -- int nerrors = 0; /* number of errors */ - MPI_Datatype etype,filetype; - MPI_Datatype adv_filetype,bas_filetype[2]; -- MPI_Datatype etypenew, filetypenew; -+ MPI_Datatype filetypenew; - MPI_Offset disp; - MPI_Status Status; - MPI_Aint adv_disp[2]; -@@ -715,7 +714,7 @@ - blocklens[0] = 1; - offsets[0] = 0; - -- if((mpi_err= MPI_Type_hindexed(count,blocklens,offsets,MPI_BYTE,&filetype)) -+ if((mpi_err= MPI_Type_create_hindexed(count,blocklens,offsets,MPI_BYTE,&filetype)) - != MPI_SUCCESS){ - MPI_Error_string(mpi_err, mpi_err_str, &mpi_err_strlen); - printf("MPI_Type_contiguous failed (%s)\n", mpi_err_str); -@@ -731,7 +730,7 @@ - count = 1; - blocklens[0]=1; - offsets[0] = 1; -- if((mpi_err= MPI_Type_hindexed(count,blocklens,offsets,MPI_BYTE,&filetypenew)) -+ if((mpi_err= MPI_Type_create_hindexed(count,blocklens,offsets,MPI_BYTE,&filetypenew)) - != MPI_SUCCESS){ - MPI_Error_string(mpi_err, mpi_err_str, &mpi_err_strlen); - printf("MPI_Type_contiguous failed (%s)\n", mpi_err_str); -@@ -752,10 +751,10 @@ - bas_filetype[0] = filetype; - bas_filetype[1] = filetypenew; - -- if((mpi_err= MPI_Type_struct(outcount,adv_blocklens,adv_disp,bas_filetype,&adv_filetype)) -+ if((mpi_err= MPI_Type_create_struct(outcount,adv_blocklens,adv_disp,bas_filetype,&adv_filetype)) - != MPI_SUCCESS){ - MPI_Error_string(mpi_err, mpi_err_str, &mpi_err_strlen); -- printf("MPI_Type_struct failed (%s)\n", mpi_err_str); -+ printf("MPI_Type_create_struct failed (%s)\n", mpi_err_str); - return 1; - } - if((mpi_err=MPI_Type_commit(&adv_filetype))!=MPI_SUCCESS){ -@@ -842,7 +841,7 @@ - processes are needed. - - 1. Details for the test: --1) Create one derived datatype with MPI_Type_hindexed: -+1) Create one derived datatype with MPI_Type_create_hindexed: - - 2) Choosing at least two processes to contribute none for IO with - the buf size inside MPI_Write_at_all to 0. -@@ -898,7 +897,7 @@ - offsets[1] = (mpi_size+mpi_rank)*count; - - if(count !=0) { -- if((mpi_err = MPI_Type_hindexed(2, -+ if((mpi_err = MPI_Type_create_hindexed(2, - blocklens, - offsets, - etype, -@@ -914,7 +913,7 @@ - return 1; - } /* end if */ - -- if((mpi_err = MPI_Type_hindexed(2, -+ if((mpi_err = MPI_Type_create_hindexed(2, - blocklens, - offsets, - etype, -@@ -1098,7 +1097,7 @@ - * calls. By then, MPI calls may not work. - */ - if (H5dont_atexit() < 0){ -- printf("Failed to turn off atexit processing. Continue.\n", mpi_rank); -+ printf("Failed to turn off atexit processing. Continue.\n"); - }; - H5open(); - if (parse_options(argc, argv) != 0){ |