diff options
Diffstat (limited to 'gnu/packages/patches/openfoam-4.1-cleanup.patch')
| -rw-r--r-- | gnu/packages/patches/openfoam-4.1-cleanup.patch | 243 |
1 files changed, 243 insertions, 0 deletions
diff --git a/gnu/packages/patches/openfoam-4.1-cleanup.patch b/gnu/packages/patches/openfoam-4.1-cleanup.patch new file mode 100644 index 0000000000..37effa5c9c --- /dev/null +++ b/gnu/packages/patches/openfoam-4.1-cleanup.patch @@ -0,0 +1,243 @@ +# This patch removes all need for the ThirdParty files of OpenFOAM. + +# Derived from EasyBuild patch by Ward Poelmans <wpoely86@gmail.com>. +# Modified for GNU Guix by Paul Garlick <pgarlick@tourbillion-technology.com>. + +diff -ur OpenFOAM-4.x-version-4.1.org/applications/utilities/mesh/manipulation/setSet/Allwmake OpenFOAM-4.x-version-4.1/applications/utilities/mesh/manipulation/setSet/Allwmake +--- OpenFOAM-4.x-version-4.1.org/applications/utilities/mesh/manipulation/setSet/Allwmake ++++ OpenFOAM-4.x-version-4.1/applications/utilities/mesh/manipulation/setSet/Allwmake +@@ -9,7 +9,7 @@ + # + # use readline if available + # +-if [ -f /usr/include/readline/readline.h ] ++if true + then + echo "Found <readline/readline.h> -- enabling readline support." + export COMP_FLAGS="-DHAS_READLINE" +diff -ur OpenFOAM-4.x-version-4.1.org/etc/bashrc OpenFOAM-4.x-version-4.1/etc/bashrc +--- OpenFOAM-4.x-version-4.1.org/etc/bashrc ++++ OpenFOAM-4.x-version-4.1/etc/bashrc +@@ -43,8 +43,10 @@ + # Please set to the appropriate path if the default is not correct. + # + [ $BASH_SOURCE ] && \ +-export FOAM_INST_DIR=$(cd ${BASH_SOURCE%/*/*/*} && pwd -P) || \ ++export FOAM_INST_DIR=$(cd $(dirname $BASH_SOURCE)/../.. && pwd -P) || \ + export FOAM_INST_DIR=$HOME/$WM_PROJECT ++# For GNU Guix: set initially for build then re-set at runtime ++# + # export FOAM_INST_DIR=~$WM_PROJECT + # export FOAM_INST_DIR=/opt/$WM_PROJECT + # export FOAM_INST_DIR=/usr/local/$WM_PROJECT +diff -ur OpenFOAM-4.x-version-4.1.org/etc/config.sh/CGAL OpenFOAM-4.x-version-4.1/etc/config.sh/CGAL +--- OpenFOAM-4.x-version-4.1.org/etc/config.sh/CGAL ++++ OpenFOAM-4.x-version-4.1/etc/config.sh/CGAL +@@ -36,37 +36,7 @@ + # + #------------------------------------------------------------------------------ + +-boost_version=boost-system +-cgal_version=cgal-system +-#cgal_version=CGAL-4.8 +- +-if [ -z "$SOURCE_CGAL_VERSIONS_ONLY" ] +-then +- +- common_path=$WM_THIRD_PARTY_DIR/platforms/$WM_ARCH$WM_COMPILER +- +- export BOOST_ARCH_PATH=$common_path/$boost_version +- export CGAL_ARCH_PATH=$common_path/$cgal_version +- +- if [ "$FOAM_VERBOSE" -a "$PS1" ] +- then +- echo "Using CGAL and boost" 1>&2 +- echo " $cgal_version at $CGAL_ARCH_PATH" 1>&2 +- echo " $boost_version at $BOOST_ARCH_PATH" 1>&2 +- fi +- +- if [ -d "$CGAL_ARCH_PATH" -a "$cgal_version" != "cgal-system" ] +- then +- _foamAddLib $CGAL_ARCH_PATH/lib +- fi +- +- if [ -d "$BOOST_ARCH_PATH" -a "$boost_version" != "boost-system" ] +- then +- _foamAddLib $BOOST_ARCH_PATH/lib +- fi +- +- unset boost_version cgal_version common_path +- +-fi ++export CGAL_ARCH_PATH=$CGAL_ROOT ++export BOOST_ARCH_PATH=$BOOST_ROOT + + #------------------------------------------------------------------------------ +diff -ur OpenFOAM-4.x-version-4.1.org/etc/config.sh/gperftools OpenFOAM-4.x-version-4.1/etc/config.sh/gperftools +--- OpenFOAM-4.x-version-4.1.org/etc/config.sh/gperftools ++++ OpenFOAM-4.x-version-4.1/etc/config.sh/gperftools +@@ -29,13 +29,5 @@ + # + #------------------------------------------------------------------------------ + +-version=svn +-gperftools_install=$WM_THIRD_PARTY_DIR/platforms/$WM_ARCH$WM_COMPILER +- +-GPERFTOOLS_VERSION=gperftools-$version +-GPERFTOOLS_ARCH_PATH=$gperftools_install/$GPERFTOOLS_VERSION +- +-export PATH=$GPERFTOOLS_ARCH_PATH/bin:$PATH +-export LD_LIBRARY_PATH=$GPERFTOOLS_ARCH_PATH/lib:$LD_LIBRARY_PATH + + #------------------------------------------------------------------------------ +diff -ur OpenFOAM-4.x-version-4.1.org/etc/config.sh/metis OpenFOAM-4.x-version-4.1/etc/config.sh/metis +--- OpenFOAM-4.x-version-4.1.org/etc/config.sh/metis ++++ OpenFOAM-4.x-version-4.1/etc/config.sh/metis +@@ -34,7 +34,7 @@ + # + #------------------------------------------------------------------------------ + +-export METIS_VERSION=metis-5.1.0 +-export METIS_ARCH_PATH=$WM_THIRD_PARTY_DIR/platforms/$WM_ARCH$WM_COMPILER$WM_PRECISION_OPTION$WM_LABEL_OPTION/$METIS_VERSION ++export METIS_VERSION=metis-$METISVERSION ++export METIS_ARCH_PATH=$METIS_ROOT + + #------------------------------------------------------------------------------ +diff -ur OpenFOAM-4.x-version-4.1.org/etc/config.sh/scotch OpenFOAM-4.x-version-4.1/etc/config.sh/scotch +--- OpenFOAM-4.x-version-4.1.org/etc/config.sh/scotch ++++ OpenFOAM-4.x-version-4.1/etc/config.sh/scotch +@@ -37,7 +37,7 @@ + # + #------------------------------------------------------------------------------ + +-export SCOTCH_VERSION=scotch_6.0.3 +-export SCOTCH_ARCH_PATH=$WM_THIRD_PARTY_DIR/platforms/$WM_ARCH$WM_COMPILER$WM_PRECISION_OPTION$WM_LABEL_OPTION/$SCOTCH_VERSION ++export SCOTCH_VERSION=scotch_$SCOTCHVERSION ++export SCOTCH_ARCH_PATH=$SCOTCH_ROOT + + #------------------------------------------------------------------------------ +diff -ur OpenFOAM-4.x-version-4.1.org/etc/config.sh/settings OpenFOAM-4.x-version-4.1/etc/config.sh/settings +--- OpenFOAM-4.x-version-4.1.org/etc/config.sh/settings ++++ OpenFOAM-4.x-version-4.1/etc/config.sh/settings +@@ -279,6 +279,9 @@ + ;; + system) + # Use system compiler ++ # Use system GMP and MPFR packages ++ export GMP_ARCH_PATH=$GMP_ROOT ++ export MPFR_ARCH_PATH=$MPFR_ROOT + ;; + *) + echo "Warn: WM_COMPILER_TYPE='$WM_COMPILER_TYPE' is unsupported" 1>&2 +diff -ur OpenFOAM-4.x-version-4.1.org/src/parallel/decompose/ptscotchDecomp/Make/options OpenFOAM-4.x-version-4.1/src/parallel/decompose/ptscotchDecomp/Make/options +--- OpenFOAM-4.x-version-4.1.org/src/parallel/decompose/ptscotchDecomp/Make/options ++++ OpenFOAM-4.x-version-4.1/src/parallel/decompose/ptscotchDecomp/Make/options +@@ -5,8 +5,7 @@ + $(PFLAGS) $(PINC) \ + -I$(SCOTCH_ROOT)/include \ + -I$(SCOTCH_ARCH_PATH)/include/$(FOAM_MPI) \ +- -I/usr/include/scotch \ + -I../decompositionMethods/lnInclude + + LIB_LIBS = \ +- -L$(SCOTCH_ROOT)/lib -L$(FOAM_EXT_LIBBIN)/$(FOAM_MPI) -lptscotch -lptscotcherrexit -lscotch ${LINK_FLAGS} -lrt ++ -L$(SCOTCH_ROOT)/lib -L$(MPI_ARCH_PATH)/lib -lptscotch -lptscotcherrexit -lscotch ${LINK_FLAGS} -lrt +diff -ur OpenFOAM-4.x-version-4.1.org/src/parallel/decompose/scotchDecomp/Make/options OpenFOAM-4.x-version-4.1/src/parallel/decompose/scotchDecomp/Make/options +--- OpenFOAM-4.x-version-4.1.org/src/parallel/decompose/scotchDecomp/Make/options ++++ OpenFOAM-4.x-version-4.1/src/parallel/decompose/scotchDecomp/Make/options +@@ -9,8 +9,7 @@ + $(PFLAGS) $(PINC) \ + -I$(SCOTCH_ROOT)/include \ + -I$(SCOTCH_ARCH_PATH)/include \ +- -I/usr/include/scotch \ + -I../decompositionMethods/lnInclude + + LIB_LIBS = \ +- -L$(SCOTCH_ROOT)/lib -L$(FOAM_EXT_LIBBIN) -lscotch -lscotcherrexit -lrt ++ -L$(SCOTCH_ROOT)/lib -lscotch -lscotcherrexit -lrt +diff -ur OpenFOAM-4.x-version-4.1.org/wmake/makefiles/general OpenFOAM-4.x-version-4.1/wmake/makefiles/general +--- OpenFOAM-4.x-version-4.1.org/wmake/makefiles/general ++++ OpenFOAM-4.x-version-4.1/wmake/makefiles/general +@@ -33,7 +33,6 @@ + # The Makefile uses a POSIX shell + #------------------------------------------------------------------------------ + +-SHELL = /bin/sh + + + #------------------------------------------------------------------------------ +diff -ur OpenFOAM-4.x-version-4.1.org/wmake/wmake OpenFOAM-4.x-version-4.1/wmake/wmake +--- OpenFOAM-4.x-version-4.1.org/wmake/wmake ++++ OpenFOAM-4.x-version-4.1/wmake/wmake +@@ -163,7 +163,7 @@ + then + if [ "$WM_NCOMPPROCS" -gt 1 -a ! "$MAKEFLAGS" ] + then +- lockDir=$HOME/.$WM_PROJECT/.wmake ++ lockDir=$(cd $(dirname $BASH_SOURCE)/../.. && pwd -P)/.$WM_PROJECT/.wmake + + if [ -d $lockDir ] + then +diff -ur OpenFOAM-4.x-version-4.1.org/wmake/wmakeScheduler OpenFOAM-4.x-version-4.1/wmake/wmakeScheduler +--- OpenFOAM-4.x-version-4.1.org/wmake/wmakeScheduler ++++ OpenFOAM-4.x-version-4.1/wmake/wmakeScheduler +@@ -53,7 +53,7 @@ + # csh sets HOST, bash sets HOSTNAME + : ${HOST:=$HOSTNAME} + +-lockDir=$HOME/.$WM_PROJECT/.wmake ++lockDir=$(cd $(dirname $BASH_SOURCE)/../.. && pwd -P)/.$WM_PROJECT/.wmake + + # Fallback - 1 core on current host + : ${WM_HOSTS:=$HOST:1} +diff -ur OpenFOAM-4.x-version-4.1.org/wmake/wmakeSchedulerUptime OpenFOAM-4.x-version-4.1/wmake/wmakeSchedulerUptime +--- OpenFOAM-4.x-version-4.1.org/wmake/wmakeSchedulerUptime ++++ OpenFOAM-4.x-version-4.1/wmake/wmakeSchedulerUptime +@@ -53,7 +53,7 @@ + # csh sets HOST, bash sets HOSTNAME + : ${HOST:=$HOSTNAME} + +-lockDir=$HOME/.$WM_PROJECT/.wmake ++lockDir=$(cd $(dirname $BASH_SOURCE)/../.. && pwd -P)/.$WM_PROJECT/.wmake + # Fallback - 1 core on current host + : ${WM_HOSTS:=$HOST:1} + +diff -ur OpenFOAM-4.x-version-4.1.org/src/parallel/decompose/metisDecomp/metisDecomp.C OpenFOAM-4.x-version-4.1/src/parallel/decompose/metisDecomp/metisDecomp.C +--- OpenFOAM-4.x-version-4.1.org/src/parallel/decompose/metisDecomp/metisDecomp.C ++++ OpenFOAM-4.x-version-4.1/src/parallel/decompose/metisDecomp/metisDecomp.C +@@ -67,7 +67,7 @@ + + // Processor weights initialised with no size, only used if specified in + // a file +- Field<scalar> processorWeights; ++ Field<floatScalar> processorWeights; + + // Cell weights (so on the vertices of the dual) + List<label> cellWeights; +diff -ur OpenFOAM-4.x-version-4.1.org/wmake/rules/General/CGAL OpenFOAM-4.x-version-4.1/wmake/rules/General/CGAL +--- OpenFOAM-4.x-version-4.1.org/wmake/rules/General/CGAL ++++ OpenFOAM-4.x-version-4.1/wmake/rules/General/CGAL +@@ -6,9 +6,10 @@ + -I/usr/include + + CGAL_LIBS = \ +- -L$(MPFR_ARCH_PATH)/lib$(WM_COMPILER_LIB_ARCH) \ +- -L$(GMP_ARCH_PATH)/lib$(WM_COMPILER_LIB_ARCH) \ ++ -L$(MPFR_ARCH_PATH)/lib \ ++ -L$(GMP_ARCH_PATH)/lib \ + -L$(BOOST_ARCH_PATH)/lib \ + -L$(CGAL_ARCH_PATH)/lib \ + -lCGAL \ ++ -lgmp \ + -lmpfr +diff -ur OpenFOAM-4.x-version-4.1.org/wmake/rules/linux64Gcc/c++ OpenFOAM-4.x-version-4.1/wmake/rules/linux64Gcc/c++ +--- OpenFOAM-4.x-version-4.1.org/wmake/rules/linux64Gcc/c++ ++++ OpenFOAM-4.x-version-4.1/wmake/rules/linux64Gcc/c++ +@@ -20,5 +20,5 @@ + + LINK_LIBS = $(c++DBUG) + +-LINKLIBSO = $(CC) $(c++FLAGS) -shared -Xlinker --add-needed -Xlinker --no-as-needed +-LINKEXE = $(CC) $(c++FLAGS) -Xlinker --add-needed -Xlinker --no-as-needed ++LINKLIBSO = $(CC) $(c++FLAGS) $(LDFLAGS) -shared -Xlinker --add-needed -Xlinker --no-as-needed ++LINKEXE = $(CC) $(c++FLAGS) $(LDFLAGS) -Xlinker --add-needed -Xlinker --no-as-needed |